|
succeeded
|
NFCORE_SAREK:PREPARE_GENOME:MSISENSOR2_SCAN (Homo_sapiens_assembly38.fasta)
|
2m 42s |
7s |
2m 19s |
16s |
386.8 MB |
101% |
3.0 GB |
1.5 GB |
0 bytes |
1.5 GB |
1 |
|
succeeded
|
NFCORE_SAREK:PREPARE_GENOME:MSISENSORPRO_SCAN (Homo_sapiens_assembly38)
|
2m 9s |
8s |
1m 50s |
11s |
443.7 MB |
101% |
3.0 GB |
79.7 MB |
0 bytes |
79.5 MB |
1 |
|
succeeded
|
NFCORE_SAREK:PREPARE_GENOME:UNZIP_ALLELES (G1000_alleles_hg38.zip)
|
9s |
7s |
- |
- |
11.2 MB |
98% |
9.8 MB |
30.0 MB |
0 bytes |
30.0 MB |
1 |
|
succeeded
|
NFCORE_SAREK:PREPARE_GENOME:UNZIP_GC (GC_G1000_hg38.zip)
|
14s |
7s |
2s |
5s |
11.3 MB |
101% |
100.1 MB |
345.6 MB |
0 bytes |
345.6 MB |
1 |
|
succeeded
|
NFCORE_SAREK:PREPARE_GENOME:UNZIP_LOCI (G1000_loci_hg38.zip)
|
9s |
7s |
- |
- |
10.7 MB |
101% |
8.3 MB |
33.1 MB |
0 bytes |
33.1 MB |
1 |
|
succeeded
|
NFCORE_SAREK:PREPARE_GENOME:UNZIP_RT (RT_G1000_hg38.zip)
|
13s |
6s |
2s |
5s |
11.1 MB |
100% |
101.6 MB |
387.4 MB |
0 bytes |
387.5 MB |
1 |
|
succeeded
|
NFCORE_SAREK:PREPARE_INTERVALS:CREATE_INTERVALS_BED (wgs_calling_regions_noseconds.hg38.bed)
|
1m 38s |
1m 15s |
1s |
22s |
2.9 MB |
96% |
56.6 KB |
9.1 KB |
0 bytes |
328.0 KB |
2 |
|
succeeded
|
NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_COMBINED (wgs_calling_regions_noseconds.hg38)
|
1m 17s |
1m 16s |
- |
- |
3.2 MB |
101% |
118.2 KB |
12.1 KB |
0 bytes |
16.0 KB |
2 |
|
succeeded
|
NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chr10_124121503-133690466)
|
4s |
3s |
- |
- |
3.2 MB |
68% |
107.5 KB |
3.4 KB |
0 bytes |
12.0 KB |
2 |
|
succeeded
|
NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chr10_38573339-38906036)
|
4s |
3s |
- |
- |
3.3 MB |
61% |
107.9 KB |
3.5 KB |
0 bytes |
12.0 KB |
2 |
|
succeeded
|
NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chr10_47870369-124121200)
|
4s |
3s |
- |
- |
3.2 MB |
108% |
107.5 KB |
3.3 KB |
0 bytes |
12.0 KB |
2 |
|
succeeded
|
NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chr1_10001-207666)
|
5s |
4s |
- |
- |
3.3 MB |
68% |
107.7 KB |
3.4 KB |
0 bytes |
12.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chr1_13004385-16799163)
|
6s |
4s |
- |
- |
3.3 MB |
134% |
107.7 KB |
3.3 KB |
0 bytes |
12.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chr1_143184588-223558935)
|
6s |
4s |
- |
- |
3.3 MB |
152% |
107.6 KB |
3.4 KB |
0 bytes |
12.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chr11_51078349-54425074)
|
4s |
3s |
- |
- |
3.3 MB |
144% |
107.5 KB |
3.4 KB |
0 bytes |
12.0 KB |
2 |
|
succeeded
|
NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chr11_60001-50821348)
|
3s |
2s |
- |
- |
3.1 MB |
47% |
107.5 KB |
3.3 KB |
0 bytes |
12.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chr11_71055697-87978202)
|
3s |
2s |
- |
- |
3.3 MB |
63% |
107.5 KB |
3.3 KB |
0 bytes |
12.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chr11_88002897-135076622)
|
4s |
3s |
- |
- |
3.3 MB |
136% |
107.5 KB |
3.4 KB |
0 bytes |
12.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chr12_10001-7083650)
|
4s |
3s |
- |
- |
3.3 MB |
144% |
107.5 KB |
3.3 KB |
0 bytes |
12.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chr1_223608936-228558364)
|
6s |
4s |
- |
- |
3.2 MB |
61% |
107.7 KB |
3.5 KB |
0 bytes |
12.0 KB |
1 |