NFCORE_SAREK:SAREK:VCF_ANNOTATE_ALL:VCF_ANNOTATE_MERGE:TABIX_TABIX (1029_BICA-T1-TDNA-1_ABtest_SSF_signatera_tissue_33_vs_1029_BICA-N1-BDNA-1_ABtest_SSF_signatera_blood_32;mutect2) - mipeters-sarek-binpacking-14 - Workflow Tracker

Runs
mipeters-sar..npacking-14
Tasks
TABIX_TABIX (1029_BICA-T1-TDNA-1_ABtest_SSF_signatera_tissue_33_vs_1029_BICA-N1-BDNA-1_ABtest_SSF_signatera_blood_32;mutect2)

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Task Info

Status: succeeded
Hash: 0898fe632625
Process: NFCORE_SAREK:SAREK:VCF_ANNOTATE_ALL:VCF_ANNOTATE_MERGE:TABIX_TABIX
Tag: 1029_BICA-T1-TDNA-1_ABtest_SSF_signatera_tissue_33_vs_1029_BICA-N1-BDNA-1_ABtest_SSF_signatera_blood_32;mutect2
Attempts: 5

Attempt 5

Execution

Status: succeeded
Hash: 6c/17df2b
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/htslib:1.20--h5efdd21_2
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6c/17df2bb6109359935bfb2d7e9939f5
Native ID: nf-6c17df2bb6109359935bfb2d7e9939f5-a0fd8

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 1.9 / 1
Memory (peak / alloc): 6.7 MB / 1.0 GB
Process I/O (rchar / wchar): 62.8 MB / 753.7 KB
Disk I/O (read / write): - / 756.0 KB
Host: i-0f6438535f34a7c9a ( spot)

Runtime

Submitted: Jan 28, 2026 1:03:30 PM
Completed: Jan 28, 2026 1:03:36 PM
Total Duration: 5s

Phases

Queue: 2s
Execution: -
Stage/Unstage: -

Attempt 4

Execution

Status: succeeded
Hash: fd/dcbcad
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/htslib:1.20--h5efdd21_2
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fd/dcbcad0b19062a3cde738946b4665a
Native ID: nf-fddcbcad0b19062a3cde738946b4665a-2f855

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 1.5 / 1
Memory (peak / alloc): 20.9 MB / 1.0 GB
Process I/O (rchar / wchar): 468.9 MB / 1.8 MB
Disk I/O (read / write): - / 1.8 MB
Host: i-0e8fb5e3e89f4f5e2 ( spot)

Runtime

Submitted: Jan 28, 2026 12:06:40 AM
Completed: Jan 28, 2026 12:06:51 AM
Total Duration: 10s

Phases

Queue: 2s
Execution: 4s
Stage/Unstage: 4s

Attempt 3

Execution

Status: succeeded
Hash: ee/c5f285
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/htslib:1.20--h5efdd21_2
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ee/c5f285303c2887bd09ec6f8e34f026
Native ID: nf-eec5f285303c2887bd09ec6f8e34f026-a9ced

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 1.8 / 1
Memory (peak / alloc): 6.5 MB / 1.0 GB
Process I/O (rchar / wchar): 90.9 MB / 1.1 MB
Disk I/O (read / write): - / 1.1 MB
Host: i-0e24f33abd5f8e352 ( spot)

Runtime

Submitted: Jan 27, 2026 5:00:25 PM
Completed: Jan 27, 2026 5:00:32 PM
Total Duration: 6s

Phases

Queue: 3s
Execution: -
Stage/Unstage: -

Attempt 2

Execution

Status: succeeded
Hash: b7/05e708
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/htslib:1.20--h5efdd21_2
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b7/05e70884ec88cb1e8088005542aa0a
Native ID: nf-b705e70884ec88cb1e8088005542aa0a-80b6f

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 1.3 / 1
Memory (peak / alloc): 8.9 MB / 1.0 GB
Process I/O (rchar / wchar): 2.9 MB / 164.2 KB
Disk I/O (read / write): - / 168.0 KB
Host: i-0716a809e2758bbe1 ( spot)

Runtime

Submitted: Jan 27, 2026 3:25:28 PM
Completed: Jan 27, 2026 3:25:33 PM
Total Duration: 4s

Phases

Queue: 3s
Execution: -
Stage/Unstage: -

Attempt 1

Execution

Status: succeeded
Hash: d3/cd3b2e
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/htslib:1.20--h5efdd21_2
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d3/cd3b2eb87419783868e2dce14ae0ff
Native ID: nf-d3cd3b2eb87419783868e2dce14ae0ff-1f9f2

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 1.7 / 1
Memory (peak / alloc): 7.0 MB / 2.0 GB
Process I/O (rchar / wchar): 13.6 MB / 204.9 KB
Disk I/O (read / write): - / 208.0 KB
Host: i-0beacbd65b6a201d0 ( spot)

Runtime

Submitted: Jan 27, 2026 3:07:10 AM
Completed: Jan 27, 2026 3:07:16 AM
Total Duration: 5s

Phases

Queue: 4s
Execution: -
Stage/Unstage: -