NFCORE_SAREK:SAREK:VCF_ANNOTATE_ALL:VCF_ANNOTATE_SNPEFF:SNPEFF_SNPEFF (1029_BICA-T1-TDNA-1_ABtest_SSF_signatera_tissue_33_vs_1029_BICA-N1-BDNA-1_ABtest_SSF_signatera_blood_32;mutect2) - mipeters-sarek-binpacking-14 - Workflow Tracker

Runs
mipeters-sar..npacking-14
Tasks
SNPEFF_SNPEFF (1029_BICA-T1-TDNA-1_ABtest_SSF_signatera_tissue_33_vs_1029_BICA-N1-BDNA-1_ABtest_SSF_signatera_blood_32;mutect2)

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Task Info

Status: succeeded
Hash: 0902ad3c60b1
Process: NFCORE_SAREK:SAREK:VCF_ANNOTATE_ALL:VCF_ANNOTATE_SNPEFF:SNPEFF_SNPEFF
Tag: 1029_BICA-T1-TDNA-1_ABtest_SSF_signatera_tissue_33_vs_1029_BICA-N1-BDNA-1_ABtest_SSF_signatera_blood_32;mutect2
Attempts: 4

Attempt 4

Execution

Status: succeeded
Hash: fc/dc3a0d
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/snpeff:5.1--hdfd78af_2
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fc/dc3a0dadd7e0a7cf3cfb4ab492a021
Native ID: nf-fcdc3a0dadd7e0a7cf3cfb4ab492a021-9831a

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 9.0 / 2
Memory (peak / alloc): 3.2 GB / 8.0 GB
Process I/O (rchar / wchar): 675.4 MB / 242.7 MB
Disk I/O (read / write): - / 239.8 MB
Host: i-0e8fb5e3e89f4f5e2 ( spot)

Runtime

Submitted: Jan 28, 2026 2:45:41 AM
Completed: Jan 28, 2026 2:48:04 AM
Total Duration: 2m 22s

Phases

Queue: 3s
Execution: 2m 15s
Stage/Unstage: 4s

Attempt 3

Execution

Status: succeeded
Hash: bf/f754cf
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/snpeff:5.1--hdfd78af_2
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bf/f754cf8cbe645948f5460d2d98283a
Native ID: nf-bff754cf8cbe645948f5460d2d98283a-e1b99

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 2.4 / 2
Memory (peak / alloc): 3.2 GB / 8.0 GB
Process I/O (rchar / wchar): 240.1 MB / 864.7 MB
Disk I/O (read / write): - / 861.8 MB
Host: i-0e80aac854e659336 ( spot)

Runtime

Submitted: Jan 27, 2026 4:50:34 PM
Completed: Jan 27, 2026 4:51:58 PM
Total Duration: 1m 23s

Phases

Queue: 10s
Execution: 1m 8s
Stage/Unstage: 5s

Attempt 2

Execution

Status: succeeded
Hash: 5d/61f64a
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/snpeff:5.1--hdfd78af_2
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5d/61f64a052e7ad39f6ff5ec63feb7da
Native ID: nf-5d61f64a052e7ad39f6ff5ec63feb7da-ec1f2

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 3.5 / 2
Memory (peak / alloc): 2.6 GB / 8.0 GB
Process I/O (rchar / wchar): 641.7 MB / 11.1 MB
Disk I/O (read / write): - / 8.2 MB
Host: i-0675a2f490e8f1b97 ( spot)

Runtime

Submitted: Jan 27, 2026 3:22:39 PM
Completed: Jan 27, 2026 3:23:59 PM
Total Duration: 1m 19s

Phases

Queue: 10s
Execution: 1m 6s
Stage/Unstage: 3s

Attempt 1

Execution

Status: succeeded
Hash: db/383aca
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/snpeff:5.1--hdfd78af_2
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/db/383aca99b95e60e00f45132210277b
Native ID: nf-db383aca99b95e60e00f45132210277b-3e757

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 1.5 / 2
Memory (peak / alloc): 2.9 GB / 8.0 GB
Process I/O (rchar / wchar): 617.4 MB / 4.4 MB
Disk I/O (read / write): - / 1.5 MB
Host: i-026723d27418fa7e5 ( spot)

Runtime

Submitted: Jan 27, 2026 3:06:22 AM
Completed: Jan 27, 2026 3:07:33 AM
Total Duration: 1m 10s

Phases

Queue: 9s
Execution: 58s
Stage/Unstage: 3s