NFCORE_SAREK:SAREK:BAM_BASERECALIBRATOR:GATK4_BASERECALIBRATOR (1029_BICA-N1-BDNA-1_ABtest_SSF_signatera_blood_32;chr10_124121503-133690466) - mipeters-sarek-binpacking-14 - Workflow Tracker

Runs
mipeters-sar..npacking-14
Tasks
GATK4_BASERECALIBRATOR (1029_BICA-N1-BDNA-1_ABtest_SSF_signatera_blood_32;chr10_124121503-133690466)

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Task Info

Status: succeeded
Hash: 2818c3874cc7
Process: NFCORE_SAREK:SAREK:BAM_BASERECALIBRATOR:GATK4_BASERECALIBRATOR
Tag: 1029_BICA-N1-BDNA-1_ABtest_SSF_signatera_blood_32;chr10_124121503-133690466
Attempts: 2

Attempt 2

Execution

Status: succeeded
Hash: 19/6362fa
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/gatk4:4.5.0.0--py36hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/19/6362fa2b159bdce39c5d50ad03d1ef
Native ID: nf-196362fa2b159bdce39c5d50ad03d1ef-ad828

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 2.0 / 1
Memory (peak / alloc): 664.6 MB / 8.0 GB
Process I/O (rchar / wchar): 169.9 MB / 802.5 KB
Disk I/O (read / write): 76.5 MB / 820.0 KB
Host: i-01a34259285a7ffb0 ( spot)

Runtime

Submitted: Jan 27, 2026 11:51:20 AM
Completed: Jan 27, 2026 11:54:54 AM
Total Duration: 3m 33s

Phases

Queue: 15s
Execution: 17s
Stage/Unstage: 3m 1s

Attempt 1

Execution

Status: succeeded
Hash: 4e/246991
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/gatk4:4.5.0.0--py36hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4e/246991cc18fd977a394856b67c0582
Native ID: nf-4e246991cc18fd977a394856b67c0582-03b52

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 1.0 / 1
Memory (peak / alloc): 880.1 MB / 8.0 GB
Process I/O (rchar / wchar): 4.6 GB / 815.1 KB
Disk I/O (read / write): 1.5 GB / 824.0 KB
Host: i-03c74f62a6cf01df8 ( spot)

Runtime

Submitted: Jan 26, 2026 8:45:39 PM
Completed: Jan 26, 2026 9:03:00 PM
Total Duration: 17m 20s

Phases

Queue: 17s
Execution: 16m 28s
Stage/Unstage: 35s