NFCORE_SAREK:SAREK:BAM_BASERECALIBRATOR:GATK4_GATHERBQSRREPORTS (1029_BICA-T1-TDNA-1_ABtest_SSF_signatera_tissue_33) - mipeters-sarek-binpacking-14 - Workflow Tracker

Runs
mipeters-sar..npacking-14
Tasks
GATK4_GATHERBQSRREPORTS (1029_BICA-T1-TDNA-1_ABtest_SSF_signatera_tissue_33)

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Task Info

Status: succeeded
Hash: 2c83b5af7fbe
Process: NFCORE_SAREK:SAREK:BAM_BASERECALIBRATOR:GATK4_GATHERBQSRREPORTS
Tag: 1029_BICA-T1-TDNA-1_ABtest_SSF_signatera_tissue_33
Attempts: 2

Attempt 2

Execution

Status: succeeded
Hash: 20/b876af
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/gatk4:4.5.0.0--py36hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/20/b876af7c00444a95f9eb768c39bad4
Native ID: nf-20b876af7c00444a95f9eb768c39bad4-37f6a

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 3.2 / 1
Memory (peak / alloc): 524.0 MB / 4.0 GB
Process I/O (rchar / wchar): 112.0 MB / 808.3 KB
Disk I/O (read / write): - / 804.0 KB
Host: i-0b9c561d4d7c4ca34 ( spot)

Runtime

Submitted: Jan 27, 2026 12:18:27 PM
Completed: Jan 27, 2026 12:19:02 PM
Total Duration: 34s

Phases

Queue: 17s
Execution: 3s
Stage/Unstage: 14s

Attempt 1

Execution

Status: succeeded
Hash: b0/53da42
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/gatk4:4.5.0.0--py36hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b0/53da426aef842b3a0ed4dccbb22d68
Native ID: nf-b053da426aef842b3a0ed4dccbb22d68-18db9

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 3.5 / 1
Memory (peak / alloc): 240.7 MB / 4.0 GB
Process I/O (rchar / wchar): 96.0 MB / 801.3 KB
Disk I/O (read / write): - / 804.0 KB
Host: i-03c74f62a6cf01df8 ( spot)

Runtime

Submitted: Jan 26, 2026 10:01:46 PM
Completed: Jan 26, 2026 10:01:55 PM
Total Duration: 8s

Phases

Queue: 3s
Execution: 3s
Stage/Unstage: 2s