NFCORE_SAREK:SAREK:VCF_ANNOTATE_ALL:VCF_ANNOTATE_SNPEFF:SNPEFF_SNPEFF (1029_BICA-N1-BDNA-1_ABtest_SSF_signatera_blood_32;haplotypecaller) - mipeters-sarek-binpacking-14 - Workflow Tracker

Runs
mipeters-sar..npacking-14
Tasks
SNPEFF_SNPEFF (1029_BICA-N1-BDNA-1_ABtest_SSF_signatera_blood_32;haplotypecaller)

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Task Info

Status: succeeded
Hash: 4e858066b56a
Process: NFCORE_SAREK:SAREK:VCF_ANNOTATE_ALL:VCF_ANNOTATE_SNPEFF:SNPEFF_SNPEFF
Tag: 1029_BICA-N1-BDNA-1_ABtest_SSF_signatera_blood_32;haplotypecaller
Attempts: 3

Attempt 3

Execution

Status: succeeded
Hash: c5/3344ad
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/snpeff:5.1--hdfd78af_2
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c5/3344ad60d656745c725ab4719bd9b1
Native ID: nf-c53344ad60d656745c725ab4719bd9b1-f82a1

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 8.8 / 2
Memory (peak / alloc): 3.9 GB / 8.0 GB
Process I/O (rchar / wchar): 670.2 MB / 295.5 MB
Disk I/O (read / write): - / 292.7 MB
Host: i-0766e96e580fccfd8 ( spot)

Runtime

Submitted: Jan 27, 2026 5:05:33 PM
Completed: Jan 27, 2026 5:08:53 PM
Total Duration: 3m 19s

Phases

Queue: 12s
Execution: 3m 2s
Stage/Unstage: 5s

Attempt 2

Execution

Status: succeeded
Hash: 64/030b84
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/snpeff:5.1--hdfd78af_2
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/64/030b8473202790a6a6b45265eacdb7
Native ID: nf-64030b8473202790a6a6b45265eacdb7-243a1

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 2.4 / 2
Memory (peak / alloc): 2.8 GB / 8.0 GB
Process I/O (rchar / wchar): 207.2 MB / 489.5 MB
Disk I/O (read / write): - / 486.6 MB
Host: i-09de6507ea61f22f7 ( spot)

Runtime

Submitted: Jan 27, 2026 3:23:19 PM
Completed: Jan 27, 2026 3:24:14 PM
Total Duration: 54s

Phases

Queue: 2s
Execution: 46s
Stage/Unstage: 6s

Attempt 1

Execution

Status: succeeded
Hash: ea/0bf424
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/snpeff:5.1--hdfd78af_2
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ea/0bf42427fd74698de17a8cfeb4b4e6
Native ID: nf-ea0bf42427fd74698de17a8cfeb4b4e6-369c5

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 1.8 / 2
Memory (peak / alloc): 2.7 GB / 8.0 GB
Process I/O (rchar / wchar): 236.0 MB / 3.5 MB
Disk I/O (read / write): - / 608.0 KB
Host: i-0b44d717c42e76ddb ( spot)

Runtime

Submitted: Jan 27, 2026 3:06:23 AM
Completed: Jan 27, 2026 3:07:05 AM
Total Duration: 41s

Phases

Queue: 9s
Execution: 30s
Stage/Unstage: 2s