NFCORE_SAREK:SAREK:VCF_ANNOTATE_ALL:VCF_ANNOTATE_REPEATMASKER:BCFTOOLS_ANNOTATE (1029_BICA-N1-BDNA-1_ABtest_SSF_signatera_blood_32;haplotypecaller) - mipeters-sarek-binpacking-14 - Workflow Tracker

Runs
mipeters-sar..npacking-14
Tasks
BCFTOOLS_ANNOTATE (1029_BICA-N1-BDNA-1_ABtest_SSF_signatera_blood_32;haplotypecaller)

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Task Info

Status: succeeded
Hash: 4eb25468d939
Process: NFCORE_SAREK:SAREK:VCF_ANNOTATE_ALL:VCF_ANNOTATE_REPEATMASKER:BCFTOOLS_ANNOTATE
Tag: 1029_BICA-N1-BDNA-1_ABtest_SSF_signatera_blood_32;haplotypecaller
Attempts: 5

Attempt 5

Execution

Status: succeeded - cached
Hash: 08/797a8e
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/bcftools:1.20--h8b25389_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/08/797a8ec8549afd53f722fa56ac5e0c
Native ID: nf-08797a8ec8549afd53f722fa56ac5e0c-b7b6f

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 6.6 / 1
Memory (peak / alloc): 392.0 MB / 1.0 GB
Process I/O (rchar / wchar): 96.3 MB / 31.2 MB
Disk I/O (read / write): - / 31.3 MB
Host: i-0f2b30a53f7fd60b5 ( spot)

Runtime

Submitted: Jan 27, 2026 5:04:34 PM
Completed: Jan 27, 2026 5:04:47 PM
Total Duration: 12s

Phases

Queue: 5s
Execution: 5s
Stage/Unstage: 2s

Attempt 4

Execution

Status: succeeded - cached
Hash: 33/61ae5d
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/bcftools:1.20--h8b25389_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/33/61ae5dfafea7a738e540f27ab685e7
Native ID: nf-3361ae5dfafea7a738e540f27ab685e7-c9615

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 6.3 / 1
Memory (peak / alloc): 387.5 MB / 1.0 GB
Process I/O (rchar / wchar): 120.3 MB / 35.3 MB
Disk I/O (read / write): - / 35.3 MB
Host: i-07fb9955ddbeec036 ( spot)

Runtime

Submitted: Jan 27, 2026 6:58:03 PM
Completed: Jan 27, 2026 6:58:14 PM
Total Duration: 10s

Phases

Queue: 3s
Execution: 5s
Stage/Unstage: 2s

Attempt 3

Execution

Status: succeeded
Hash: 22/7dcc89
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/bcftools:1.20--h8b25389_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/22/7dcc898976f918ffd6d1dcc701a59d
Native ID: nf-227dcc898976f918ffd6d1dcc701a59d-108c9

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 4.4 / 1
Memory (peak / alloc): 388.5 MB / 1.0 GB
Process I/O (rchar / wchar): 88.5 MB / 27.0 MB
Disk I/O (read / write): - / 27.0 MB
Host: i-0f175a980ffbd2986 ( spot)

Runtime

Submitted: Jan 27, 2026 4:46:06 PM
Completed: Jan 27, 2026 4:46:18 PM
Total Duration: 11s

Phases

Queue: 3s
Execution: 5s
Stage/Unstage: 3s

Attempt 2

Execution

Status: succeeded
Hash: 45/b0a76b
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/bcftools:1.20--h8b25389_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/45/b0a76b6a87751249243eb068c62da1
Native ID: nf-45b0a76b6a87751249243eb068c62da1-2ca18

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 8.3 / 1
Memory (peak / alloc): 261.1 MB / 1.0 GB
Process I/O (rchar / wchar): 38.8 MB / 25.2 KB
Disk I/O (read / write): - / 36.0 KB
Host: i-0ca18d70a2aca1548 ( spot)

Runtime

Submitted: Jan 27, 2026 3:08:45 PM
Completed: Jan 27, 2026 3:08:54 PM
Total Duration: 8s

Phases

Queue: 4s
Execution: 2s
Stage/Unstage: 2s

Attempt 1

Execution

Status: succeeded
Hash: 11/bae7b1
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/bcftools:1.20--h8b25389_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/11/bae7b1bfd53d1e4611326ebc0bd8df
Native ID: nf-11bae7b1bfd53d1e4611326ebc0bd8df-af827

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 4.5 / 1
Memory (peak / alloc): 300.5 MB / 2.0 GB
Process I/O (rchar / wchar): 39.6 MB / 476.9 KB
Disk I/O (read / write): - / 484.0 KB
Host: i-0b75f1c68bc526f43 ( spot)

Runtime

Submitted: Jan 27, 2026 2:52:59 AM
Completed: Jan 27, 2026 2:53:07 AM
Total Duration: 7s

Phases

Queue: 4s
Execution: 1s
Stage/Unstage: 2s