NFCORE_SAREK:SAREK:VCF_ANNOTATE_ALL:VCF_ANNOTATE_SNPEFF:TABIX_BGZIPTABIX (1029_BICA-T1-TDNA-1_ABtest_SSF_signatera_tissue_33_vs_1029_BICA-N1-BDNA-1_ABtest_SSF_signatera_blood_32;mutect2) - mipeters-sarek-binpacking-14 - Workflow Tracker

Runs
mipeters-sar..npacking-14
Tasks
TABIX_BGZIPTABIX (1029_BICA-T1-TDNA-1_ABtest_SSF_signatera_tissue_33_vs_1029_BICA-N1-BDNA-1_ABtest_SSF_signatera_blood_32;mutect2)

Login

Task Info

Status: succeeded
Hash: 50b6994ea524
Process: NFCORE_SAREK:SAREK:VCF_ANNOTATE_ALL:VCF_ANNOTATE_SNPEFF:TABIX_BGZIPTABIX
Tag: 1029_BICA-T1-TDNA-1_ABtest_SSF_signatera_tissue_33_vs_1029_BICA-N1-BDNA-1_ABtest_SSF_signatera_blood_32;mutect2
Attempts: 5

Attempt 5

Execution

Status: succeeded
Hash: 29/c825fa
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/htslib:1.20--h5efdd21_2
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/29/c825faf6ea81a3c11c03e26a3b908a
Native ID: nf-29c825faf6ea81a3c11c03e26a3b908a-de949

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 0.6 / 1
Memory (peak / alloc): 6.2 MB / 1.0 GB
Process I/O (rchar / wchar): 277.8 MB / 44.8 MB
Disk I/O (read / write): - / 44.9 MB
Host: i-0f6438535f34a7c9a ( spot)

Runtime

Submitted: Jan 28, 2026 12:57:40 PM
Completed: Jan 28, 2026 12:57:54 PM
Total Duration: 13s

Phases

Queue: 4s
Execution: 6s
Stage/Unstage: 3s

Attempt 4

Execution

Status: succeeded
Hash: 5e/eec417
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/htslib:1.20--h5efdd21_2
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5e/eec417a3e22731eb93855e6ad01b95
Native ID: nf-5eeec417a3e22731eb93855e6ad01b95-66d48

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 1.1 / 1
Memory (peak / alloc): 5.9 MB / 1.0 GB
Process I/O (rchar / wchar): 2.4 GB / 286.5 MB
Disk I/O (read / write): 2.3 GB / 286.5 MB
Host: i-0e8fb5e3e89f4f5e2 ( spot)

Runtime

Submitted: Jan 27, 2026 11:22:20 PM
Completed: Jan 27, 2026 11:22:56 PM
Total Duration: 35s

Phases

Queue: 4s
Execution: 23s
Stage/Unstage: 8s

Attempt 3

Execution

Status: succeeded
Hash: 8e/3c558d
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/htslib:1.20--h5efdd21_2
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8e/3c558d1f6b699524e3df5b7a66767b
Native ID: nf-8e3c558d1f6b699524e3df5b7a66767b-ffc43

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 1.1 / 1
Memory (peak / alloc): 6.1 MB / 1.0 GB
Process I/O (rchar / wchar): 8.8 MB / 1.6 MB
Disk I/O (read / write): - / 1.6 MB
Host: i-05eb4cd7aec22b118 ( spot)

Runtime

Submitted: Jan 27, 2026 4:51:23 PM
Completed: Jan 27, 2026 4:51:30 PM
Total Duration: 6s

Phases

Queue: 4s
Execution: -
Stage/Unstage: -

Attempt 2

Execution

Status: succeeded
Hash: 7c/074f11
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/htslib:1.20--h5efdd21_2
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7c/074f11663967af11d0ba4ff89bfb12
Native ID: nf-7c074f11663967af11d0ba4ff89bfb12-a89bf

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 1.0 / 1
Memory (peak / alloc): 6.1 MB / 1.0 GB
Process I/O (rchar / wchar): 282.4 MB / 39.3 MB
Disk I/O (read / write): - / 39.7 MB
Host: i-03bea117c78d6c928 ( spot)

Runtime

Submitted: Jan 27, 2026 3:21:38 PM
Completed: Jan 27, 2026 3:21:49 PM
Total Duration: 10s

Phases

Queue: 4s
Execution: 3s
Stage/Unstage: 3s

Attempt 1

Execution

Status: succeeded
Hash: 36/9aec44
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/htslib:1.20--h5efdd21_2
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/36/9aec44a17dfec7536d118bd2d87fe9
Native ID: nf-369aec44a17dfec7536d118bd2d87fe9-98a98

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 1.1 / 1
Memory (peak / alloc): 6.1 MB / 2.0 GB
Process I/O (rchar / wchar): 33.8 MB / 6.7 MB
Disk I/O (read / write): - / 6.7 MB
Host: i-02d654e51fb31610b ( spot)

Runtime

Submitted: Jan 27, 2026 3:04:59 AM
Completed: Jan 27, 2026 3:05:05 AM
Total Duration: 5s

Phases

Queue: 3s
Execution: -
Stage/Unstage: -