NFCORE_SAREK:SAREK:BAM_APPLYBQSR:CRAM_MERGE_INDEX_SAMTOOLS:INDEX_CRAM (1029_BICA-T1-TDNA-1_ABtest_SSF_signatera_tissue_33) - mipeters-sarek-binpacking-14 - Workflow Tracker

Runs
mipeters-sar..npacking-14
Tasks
INDEX_CRAM (1029_BICA-T1-TDNA-1_ABtest_SSF_signatera_tissue_33)

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Task Info

Status: succeeded
Hash: 62691f07f95e
Process: NFCORE_SAREK:SAREK:BAM_APPLYBQSR:CRAM_MERGE_INDEX_SAMTOOLS:INDEX_CRAM
Tag: 1029_BICA-T1-TDNA-1_ABtest_SSF_signatera_tissue_33
Attempts: 2

Attempt 2

Execution

Status: succeeded
Hash: 35/87d2a0
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/samtools:1.21--h50ea8bc_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/35/87d2a0c56ce2984cde6cabd9cc5f0e
Native ID: nf-3587d2a0c56ce2984cde6cabd9cc5f0e-218dd

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 1.5 / 2
Memory (peak / alloc): 64.3 MB / 12.0 GB
Process I/O (rchar / wchar): 109.6 GB / 5.7 MB
Disk I/O (read / write): 109.6 GB / 5.7 MB
Host: i-0e60f6cbe90fbc6eb ( spot)

Runtime

Submitted: Jan 27, 2026 2:37:05 PM
Completed: Jan 27, 2026 2:53:40 PM
Total Duration: 16m 34s

Phases

Queue: 33s
Execution: 10m 53s
Stage/Unstage: 5m 8s

Attempt 1

Execution

Status: succeeded
Hash: 30/f217d1
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/samtools:1.21--h50ea8bc_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/30/f217d15c6fa46e94a41d15a629c465
Native ID: nf-30f217d15c6fa46e94a41d15a629c465-a40c1

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 1.4 / 2
Memory (peak / alloc): 31.6 MB / 12.0 GB
Process I/O (rchar / wchar): 77.5 GB / 3.3 MB
Disk I/O (read / write): 77.5 GB / 3.3 MB
Host: i-0e775db8db0758ab8 ( spot)

Runtime

Submitted: Jan 27, 2026 2:10:17 AM
Completed: Jan 27, 2026 2:20:14 AM
Total Duration: 9m 56s

Phases

Queue: 4s
Execution: 6m 44s
Stage/Unstage: 3m 8s