NFCORE_SAREK:SAREK:BAM_APPLYBQSR:CRAM_MERGE_INDEX_SAMTOOLS:MERGE_CRAM (1029_BICA-N1-BDNA-1_ABtest_SSF_signatera_blood_32) - mipeters-sarek-binpacking-14 - Workflow Tracker

Runs
mipeters-sar..npacking-14
Tasks
MERGE_CRAM (1029_BICA-N1-BDNA-1_ABtest_SSF_signatera_blood_32)

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Task Info

Status: succeeded
Hash: 69aa1a4cf2b5
Process: NFCORE_SAREK:SAREK:BAM_APPLYBQSR:CRAM_MERGE_INDEX_SAMTOOLS:MERGE_CRAM
Tag: 1029_BICA-N1-BDNA-1_ABtest_SSF_signatera_blood_32
Attempts: 2

Attempt 2

Execution

Status: succeeded
Hash: d3/04dab0
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/samtools:1.21--h50ea8bc_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d3/04dab0015978dda25dbb33e46f917c
Native ID: nf-d304dab0015978dda25dbb33e46f917c-25e11

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 1.2 / 2
Memory (peak / alloc): 320.4 MB / 12.0 GB
Process I/O (rchar / wchar): 24.5 GB / 22.1 GB
Disk I/O (read / write): 23.4 GB / 22.1 GB
Host: i-0647125d2962232ab ( on-demand)

Runtime

Submitted: Jan 27, 2026 12:06:18 PM
Completed: Jan 27, 2026 12:29:30 PM
Total Duration: 23m 11s

Phases

Queue: 24s
Execution: 20m 57s
Stage/Unstage: 1m 50s

Attempt 1

Execution

Status: succeeded
Hash: 68/ab636c
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/samtools:1.21--h50ea8bc_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/68/ab636cdc155912049c7af0959ab744
Native ID: nf-68ab636cdc155912049c7af0959ab744-6f871

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 1.2 / 2
Memory (peak / alloc): 26.3 MB / 12.0 GB
Process I/O (rchar / wchar): 16.7 GB / 15.1 GB
Disk I/O (read / write): 16.5 GB / 15.1 GB
Host: i-0323358c18f724fa3 ( spot)

Runtime

Submitted: Jan 26, 2026 9:20:07 PM
Completed: Jan 26, 2026 9:36:24 PM
Total Duration: 16m 16s

Phases

Queue: 3s
Execution: 15m 7s
Stage/Unstage: 1m 6s