NFCORE_SAREK:SAREK:BAM_APPLYBQSR:CRAM_MERGE_INDEX_SAMTOOLS:INDEX_CRAM (1029_BICA-N1-BDNA-1_ABtest_SSF_signatera_blood_32) - mipeters-sarek-binpacking-14 - Workflow Tracker

Runs
mipeters-sar..npacking-14
Tasks
INDEX_CRAM (1029_BICA-N1-BDNA-1_ABtest_SSF_signatera_blood_32)

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Task Info

Status: succeeded
Hash: 6fee8f38183d
Process: NFCORE_SAREK:SAREK:BAM_APPLYBQSR:CRAM_MERGE_INDEX_SAMTOOLS:INDEX_CRAM
Tag: 1029_BICA-N1-BDNA-1_ABtest_SSF_signatera_blood_32
Attempts: 2

Attempt 2

Execution

Status: succeeded
Hash: c7/92bd23
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/samtools:1.21--h50ea8bc_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c7/92bd2319c4090ee705bb0ba9dc353f
Native ID: nf-c792bd2319c4090ee705bb0ba9dc353f-81c4a

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 1.3 / 2
Memory (peak / alloc): 35.6 MB / 12.0 GB
Process I/O (rchar / wchar): 22.1 GB / 4.5 MB
Disk I/O (read / write): 13.1 GB / 4.5 MB
Host: i-0866f49d6fccf8031 ( spot)

Runtime

Submitted: Jan 27, 2026 12:29:36 PM
Completed: Jan 27, 2026 12:32:24 PM
Total Duration: 2m 47s

Phases

Queue: 3s
Execution: 1m 50s
Stage/Unstage: 54s

Attempt 1

Execution

Status: succeeded
Hash: 32/d2cbf3
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/samtools:1.21--h50ea8bc_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/32/d2cbf3c9cb2da17d462aaecbb11460
Native ID: nf-32d2cbf3c9cb2da17d462aaecbb11460-0dd0b

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 1.3 / 2
Memory (peak / alloc): 16.4 MB / 12.0 GB
Process I/O (rchar / wchar): 15.1 GB / 2.8 MB
Disk I/O (read / write): 15.1 GB / 2.8 MB
Host: i-017cc372a21bca17a ( spot)

Runtime

Submitted: Jan 26, 2026 9:36:27 PM
Completed: Jan 26, 2026 9:38:22 PM
Total Duration: 1m 54s

Phases

Queue: 4s
Execution: 1m 16s
Stage/Unstage: 34s