NFCORE_SAREK:SAREK:VCF_ANNOTATE_ALL:VCF_ANNOTATE_SNPEFF:SNPEFF_SNPEFF (1029_BICA-T1-TDNA-1_ABtest_SSF_signatera_tissue_33_vs_1029_BICA-N1-BDNA-1_ABtest_SSF_signatera_blood_32;mutect2) - mipeters-sarek-binpacking-14 - Workflow Tracker

Runs
mipeters-sar..npacking-14
Tasks
SNPEFF_SNPEFF (1029_BICA-T1-TDNA-1_ABtest_SSF_signatera_tissue_33_vs_1029_BICA-N1-BDNA-1_ABtest_SSF_signatera_blood_32;mutect2)

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Task Info

Status: succeeded
Hash: 950af4e0d500
Process: NFCORE_SAREK:SAREK:VCF_ANNOTATE_ALL:VCF_ANNOTATE_SNPEFF:SNPEFF_SNPEFF
Tag: 1029_BICA-T1-TDNA-1_ABtest_SSF_signatera_tissue_33_vs_1029_BICA-N1-BDNA-1_ABtest_SSF_signatera_blood_32;mutect2
Attempts: 5

Attempt 5

Execution

Status: succeeded
Hash: 4c/6bb780
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/snpeff:5.1--hdfd78af_2
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4c/6bb780b5e934cb745b1223ed944a1c
Native ID: nf-4c6bb780b5e934cb745b1223ed944a1c-29469

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 7.9 / 2
Memory (peak / alloc): 3.5 GB / 8.0 GB
Process I/O (rchar / wchar): 674.9 MB / 241.0 MB
Disk I/O (read / write): - / 238.2 MB
Host: i-0f6438535f34a7c9a ( spot)

Runtime

Submitted: Jan 28, 2026 12:55:00 PM
Completed: Jan 28, 2026 12:57:32 PM
Total Duration: 2m 31s

Phases

Queue: 10s
Execution: 2m 16s
Stage/Unstage: 5s

Attempt 4

Execution

Status: succeeded
Hash: c2/763d60
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/snpeff:5.1--hdfd78af_2
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c2/763d6018a12aa3dd22acfc2377b974
Native ID: nf-c2763d6018a12aa3dd22acfc2377b974-7c2c4

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 9.1 / 2
Memory (peak / alloc): 7.2 GB / 8.0 GB
Process I/O (rchar / wchar): 854.2 MB / 2.1 GB
Disk I/O (read / write): 457.3 MB / 2.1 GB
Host: i-0e8fb5e3e89f4f5e2 ( spot)

Runtime

Submitted: Jan 27, 2026 11:12:40 PM
Completed: Jan 27, 2026 11:22:15 PM
Total Duration: 9m 34s

Phases

Queue: 10s
Execution: 9m 15s
Stage/Unstage: 9s

Attempt 3

Execution

Status: succeeded
Hash: 56/f1c880
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/snpeff:5.1--hdfd78af_2
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/56/f1c8806a4369cfb84dc371244367e5
Native ID: nf-56f1c8806a4369cfb84dc371244367e5-1e7a5

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 3.7 / 2
Memory (peak / alloc): 3.4 GB / 8.0 GB
Process I/O (rchar / wchar): 641.8 MB / 11.0 MB
Disk I/O (read / write): - / 8.1 MB
Host: i-0f175a980ffbd2986 ( spot)

Runtime

Submitted: Jan 27, 2026 4:49:44 PM
Completed: Jan 27, 2026 4:51:21 PM
Total Duration: 1m 36s

Phases

Queue: 13s
Execution: 1m 19s
Stage/Unstage: 4s

Attempt 2

Execution

Status: succeeded
Hash: d9/bbca4e
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/snpeff:5.1--hdfd78af_2
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d9/bbca4ea3c74e0d9d1217723c141f44
Native ID: nf-d9bbca4ea3c74e0d9d1217723c141f44-87040

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 10.1 / 2
Memory (peak / alloc): 4.2 GB / 8.0 GB
Process I/O (rchar / wchar): 666.3 MB / 252.7 MB
Disk I/O (read / write): - / 249.9 MB
Host: i-09de6507ea61f22f7 ( spot)

Runtime

Submitted: Jan 27, 2026 3:18:30 PM
Completed: Jan 27, 2026 3:21:31 PM
Total Duration: 3m 0s

Phases

Queue: 10s
Execution: 2m 46s
Stage/Unstage: 4s

Attempt 1

Execution

Status: succeeded
Hash: b8/a49050
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/snpeff:5.1--hdfd78af_2
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b8/a49050e8feefa06051d435c921a0e2
Native ID: nf-b8a49050e8feefa06051d435c921a0e2-16a2e

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 1.7 / 2
Memory (peak / alloc): 4.2 GB / 8.0 GB
Process I/O (rchar / wchar): 643.3 MB / 32.4 MB
Disk I/O (read / write): - / 29.6 MB
Host: i-04a9004b76b020402 ( spot)

Runtime

Submitted: Jan 27, 2026 3:03:18 AM
Completed: Jan 27, 2026 3:04:53 AM
Total Duration: 1m 34s

Phases

Queue: 12s
Execution: 1m 19s
Stage/Unstage: 3s