NFCORE_SAREK:SAREK:BAM_BASERECALIBRATOR:GATK4_BASERECALIBRATOR (1029_BICA-N1-BDNA-1_ABtest_SSF_signatera_blood_32;chr10_47870369-124121200) - mipeters-sarek-binpacking-14 - Workflow Tracker

Runs
mipeters-sar..npacking-14
Tasks
GATK4_BASERECALIBRATOR (1029_BICA-N1-BDNA-1_ABtest_SSF_signatera_blood_32;chr10_47870369-124121200)

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Task Info

Status: succeeded
Hash: 98a3af9b0926
Process: NFCORE_SAREK:SAREK:BAM_BASERECALIBRATOR:GATK4_BASERECALIBRATOR
Tag: 1029_BICA-N1-BDNA-1_ABtest_SSF_signatera_blood_32;chr10_47870369-124121200
Attempts: 2

Attempt 2

Execution

Status: succeeded
Hash: 0a/8e7548
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/gatk4:4.5.0.0--py36hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0a/8e75480a2574e7573e635ddf301300
Native ID: nf-0a8e75480a2574e7573e635ddf301300-d918b

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 1.2 / 1
Memory (peak / alloc): 600.7 MB / 8.0 GB
Process I/O (rchar / wchar): 660.3 MB / 804.9 KB
Disk I/O (read / write): 383.2 MB / 820.0 KB
Host: i-01a34259285a7ffb0 ( spot)

Runtime

Submitted: Jan 27, 2026 11:51:22 AM
Completed: Jan 27, 2026 11:56:13 AM
Total Duration: 4m 50s

Phases

Queue: 24s
Execution: 2m 30s
Stage/Unstage: 1m 56s

Attempt 1

Execution

Status: succeeded
Hash: f0/1558e1
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/gatk4:4.5.0.0--py36hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f0/1558e1628c4ccf8d43e7eb20a94c63
Native ID: nf-f01558e1628c4ccf8d43e7eb20a94c63-9410a

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 1.2 / 1
Memory (peak / alloc): 689.3 MB / 8.0 GB
Process I/O (rchar / wchar): 652.7 MB / 804.1 KB
Disk I/O (read / write): 317.7 MB / 820.0 KB
Host: i-03c74f62a6cf01df8 ( spot)

Runtime

Submitted: Jan 26, 2026 8:45:39 PM
Completed: Jan 26, 2026 8:47:52 PM
Total Duration: 2m 12s

Phases

Queue: 17s
Execution: 1m 21s
Stage/Unstage: 34s