NFCORE_SAREK:SAREK:VCF_ANNOTATE_ALL:VCF_ANNOTATE_SNPEFF:TABIX_BGZIPTABIX (1029_BICA-N1-BDNA-1_ABtest_SSF_signatera_blood_32;haplotypecaller) - mipeters-sarek-binpacking-14 - Workflow Tracker

Runs
mipeters-sar..npacking-14
Tasks
TABIX_BGZIPTABIX (1029_BICA-N1-BDNA-1_ABtest_SSF_signatera_blood_32;haplotypecaller)

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Task Info

Status: succeeded
Hash: 9db6ec5534ef
Process: NFCORE_SAREK:SAREK:VCF_ANNOTATE_ALL:VCF_ANNOTATE_SNPEFF:TABIX_BGZIPTABIX
Tag: 1029_BICA-N1-BDNA-1_ABtest_SSF_signatera_blood_32;haplotypecaller
Attempts: 5

Attempt 5

Execution

Status: succeeded - cached
Hash: 7c/f0b52b
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/htslib:1.20--h5efdd21_2
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7c/f0b52bef65f1273b4a12e5837856bb
Native ID: nf-7cf0b52bef65f1273b4a12e5837856bb-2f8c2

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 0.7 / 1
Memory (peak / alloc): 18.0 MB / 1.0 GB
Process I/O (rchar / wchar): 331.0 MB / 45.6 MB
Disk I/O (read / write): - / 45.7 MB
Host: i-0c4652d5c26da2e61 ( spot)

Runtime

Submitted: Jan 27, 2026 5:09:04 PM
Completed: Jan 27, 2026 5:09:16 PM
Total Duration: 11s

Phases

Queue: 3s
Execution: 6s
Stage/Unstage: 2s

Attempt 4

Execution

Status: succeeded - cached
Hash: 19/310f54
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/htslib:1.20--h5efdd21_2
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/19/310f54a0a5fa7da4b722565ff72d48
Native ID: nf-19310f54a0a5fa7da4b722565ff72d48-73491

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 0.8 / 1
Memory (peak / alloc): 13.8 MB / 1.0 GB
Process I/O (rchar / wchar): 277.8 MB / 44.8 MB
Disk I/O (read / write): - / 44.9 MB
Host: i-07fb9955ddbeec036 ( spot)

Runtime

Submitted: Jan 27, 2026 7:01:22 PM
Completed: Jan 27, 2026 7:01:34 PM
Total Duration: 11s

Phases

Queue: 4s
Execution: 5s
Stage/Unstage: 2s

Attempt 3

Execution

Status: succeeded
Hash: 19/59cfbb
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/htslib:1.20--h5efdd21_2
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/19/59cfbb2555077019bff6545c91c6fa
Native ID: nf-1959cfbb2555077019bff6545c91c6fa-28efc

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 0.9 / 1
Memory (peak / alloc): 13.6 MB / 1.0 GB
Process I/O (rchar / wchar): 287.2 MB / 39.3 MB
Disk I/O (read / write): - / 39.3 MB
Host: i-097cd42d21fd25e6c ( spot)

Runtime

Submitted: Jan 27, 2026 4:50:34 PM
Completed: Jan 27, 2026 4:50:47 PM
Total Duration: 12s

Phases

Queue: 4s
Execution: 5s
Stage/Unstage: 3s

Attempt 2

Execution

Status: succeeded
Hash: 7c/00926c
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/htslib:1.20--h5efdd21_2
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7c/00926c49844e21efb840bc18689956
Native ID: nf-7c00926c49844e21efb840bc18689956-e98e1

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 0.5 / 1
Memory (peak / alloc): 3.3 MB / 1.0 GB
Process I/O (rchar / wchar): 384.6 KB / 43.7 KB
Disk I/O (read / write): - / 48.0 KB
Host: i-0675a2f490e8f1b97 ( spot)

Runtime

Submitted: Jan 27, 2026 3:11:03 PM
Completed: Jan 27, 2026 3:11:09 PM
Total Duration: 5s

Phases

Queue: 4s
Execution: -
Stage/Unstage: -

Attempt 1

Execution

Status: succeeded
Hash: 3c/5efa5a
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/htslib:1.20--h5efdd21_2
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3c/5efa5ada1aae4076f2e96ac9e65671
Native ID: nf-3c5efa5ada1aae4076f2e96ac9e65671-6cc76

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 1.0 / 1
Memory (peak / alloc): 6.2 MB / 2.0 GB
Process I/O (rchar / wchar): 6.9 MB / 965.8 KB
Disk I/O (read / write): - / 972.0 KB
Host: i-000ede16e61a95d6e ( spot)

Runtime

Submitted: Jan 27, 2026 2:55:19 AM
Completed: Jan 27, 2026 2:55:26 AM
Total Duration: 6s

Phases

Queue: 5s
Execution: -
Stage/Unstage: -