NFCORE_SAREK:SAREK:VCF_ANNOTATE_ALL:VCF_ANNOTATE_SNPEFF:TABIX_BGZIPTABIX (1029_BICA-T1-TDNA-1_ABtest_SSF_signatera_tissue_33_vs_1029_BICA-N1-BDNA-1_ABtest_SSF_signatera_blood_32;tnseq) - mipeters-sarek-binpacking-14 - Workflow Tracker

Runs
mipeters-sar..npacking-14
Tasks
TABIX_BGZIPTABIX (1029_BICA-T1-TDNA-1_ABtest_SSF_signatera_tissue_33_vs_1029_BICA-N1-BDNA-1_ABtest_SSF_signatera_blood_32;tnseq)

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Task Info

Status: succeeded
Hash: a906486e5603
Process: NFCORE_SAREK:SAREK:VCF_ANNOTATE_ALL:VCF_ANNOTATE_SNPEFF:TABIX_BGZIPTABIX
Tag: 1029_BICA-T1-TDNA-1_ABtest_SSF_signatera_tissue_33_vs_1029_BICA-N1-BDNA-1_ABtest_SSF_signatera_blood_32;tnseq
Attempts: 5

Attempt 5

Execution

Status: succeeded - cached
Hash: 5e/eec417
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/htslib:1.20--h5efdd21_2
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5e/eec417a3e22731eb93855e6ad01b95
Native ID: nf-5eeec417a3e22731eb93855e6ad01b95-66d48

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 1.1 / 1
Memory (peak / alloc): 5.9 MB / 1.0 GB
Process I/O (rchar / wchar): 2.4 GB / 286.5 MB
Disk I/O (read / write): 2.3 GB / 286.5 MB
Host: i-0e8fb5e3e89f4f5e2 ( spot)

Runtime

Submitted: Jan 27, 2026 11:22:20 PM
Completed: Jan 27, 2026 11:22:56 PM
Total Duration: 35s

Phases

Queue: 4s
Execution: 23s
Stage/Unstage: 8s

Attempt 4

Execution

Status: succeeded - cached
Hash: 88/e59c0b
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/htslib:1.20--h5efdd21_2
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/88/e59c0bc3b8ad99b898616f2ecaee3a
Native ID: nf-88e59c0bc3b8ad99b898616f2ecaee3a-c02aa

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 1.2 / 1
Memory (peak / alloc): 3.2 MB / 1.0 GB
Process I/O (rchar / wchar): 325.6 KB / 30.1 KB
Disk I/O (read / write): - / 32.0 KB
Host: i-07fb9955ddbeec036 ( spot)

Runtime

Submitted: Jan 27, 2026 4:38:30 PM
Completed: Jan 27, 2026 4:38:34 PM
Total Duration: 3s

Phases

Queue: 2s
Execution: -
Stage/Unstage: -

Attempt 3

Execution

Status: succeeded
Hash: e1/582adf
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/htslib:1.20--h5efdd21_2
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e1/582adf1ada3a5ee51d76f2722bfdfa
Native ID: nf-e1582adf1ada3a5ee51d76f2722bfdfa-60677

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 1.1 / 1
Memory (peak / alloc): 6.1 MB / 1.0 GB
Process I/O (rchar / wchar): 460.5 MB / 48.4 MB
Disk I/O (read / write): - / 48.4 MB
Host: i-07fb9955ddbeec036 ( spot)

Runtime

Submitted: Jan 27, 2026 4:38:15 PM
Completed: Jan 27, 2026 4:38:27 PM
Total Duration: 11s

Phases

Queue: 3s
Execution: 4s
Stage/Unstage: 4s

Attempt 2

Execution

Status: succeeded
Hash: 1d/bd3c50
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/htslib:1.20--h5efdd21_2
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1d/bd3c509d5f0fbf67164365af41075b
Native ID: nf-1dbd3c509d5f0fbf67164365af41075b-3eecf

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 0.7 / 1
Memory (peak / alloc): 20.5 MB / 1.0 GB
Process I/O (rchar / wchar): 458.1 MB / 49.5 MB
Disk I/O (read / write): - / 49.5 MB
Host: i-0868828b50fb5dea1 ( spot)

Runtime

Submitted: Jan 27, 2026 12:45:16 PM
Completed: Jan 27, 2026 12:45:30 PM
Total Duration: 13s

Phases

Queue: 3s
Execution: 6s
Stage/Unstage: 4s

Attempt 1

Execution

Status: succeeded
Hash: f7/fcb8a9
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/htslib:1.20--h5efdd21_2
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f7/fcb8a9768a4bcec6781951f04f9644
Native ID: nf-f7fcb8a9768a4bcec6781951f04f9644-d4ede

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 0.6 / 1
Memory (peak / alloc): 3.3 MB / 2.0 GB
Process I/O (rchar / wchar): 1.0 MB / 136.2 KB
Disk I/O (read / write): - / 144.0 KB
Host: i-040efb27cd5693285 ( spot)

Runtime

Submitted: Jan 26, 2026 9:50:37 PM
Completed: Jan 26, 2026 9:50:42 PM
Total Duration: 4s

Phases

Queue: 3s
Execution: -
Stage/Unstage: -