NFCORE_SAREK:SAREK:VCF_ANNOTATE_ALL:VCF_ANNOTATE_SNPEFF:SNPEFF_SNPEFF (1029_BICA-N1-BDNA-1_ABtest_SSF_signatera_blood_32;haplotypecaller) - mipeters-sarek-binpacking-14 - Workflow Tracker

Runs
mipeters-sar..npacking-14
Tasks
SNPEFF_SNPEFF (1029_BICA-N1-BDNA-1_ABtest_SSF_signatera_blood_32;haplotypecaller)

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Task Info

Status: succeeded
Hash: bc2b3a6a20f3
Process: NFCORE_SAREK:SAREK:VCF_ANNOTATE_ALL:VCF_ANNOTATE_SNPEFF:SNPEFF_SNPEFF
Tag: 1029_BICA-N1-BDNA-1_ABtest_SSF_signatera_blood_32;haplotypecaller
Attempts: 5

Attempt 5

Execution

Status: succeeded - cached
Hash: c5/3344ad
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/snpeff:5.1--hdfd78af_2
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c5/3344ad60d656745c725ab4719bd9b1
Native ID: nf-c53344ad60d656745c725ab4719bd9b1-f82a1

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 8.8 / 2
Memory (peak / alloc): 3.9 GB / 8.0 GB
Process I/O (rchar / wchar): 670.2 MB / 295.5 MB
Disk I/O (read / write): - / 292.7 MB
Host: i-0766e96e580fccfd8 ( spot)

Runtime

Submitted: Jan 27, 2026 5:05:33 PM
Completed: Jan 27, 2026 5:08:53 PM
Total Duration: 3m 19s

Phases

Queue: 12s
Execution: 3m 2s
Stage/Unstage: 5s

Attempt 4

Execution

Status: succeeded - cached
Hash: 30/69f023
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/snpeff:5.1--hdfd78af_2
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/30/69f023eb9d3603a1a1f96e2fc7fe02
Native ID: nf-3069f023eb9d3603a1a1f96e2fc7fe02-1b3a4

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 8.6 / 2
Memory (peak / alloc): 3.0 GB / 8.0 GB
Process I/O (rchar / wchar): 675.0 MB / 241.0 MB
Disk I/O (read / write): - / 238.2 MB
Host: i-07fb9955ddbeec036 ( spot)

Runtime

Submitted: Jan 27, 2026 6:58:52 PM
Completed: Jan 27, 2026 7:01:14 PM
Total Duration: 2m 21s

Phases

Queue: 3s
Execution: 2m 14s
Stage/Unstage: 4s

Attempt 3

Execution

Status: succeeded
Hash: 59/3f0cd9
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/snpeff:5.1--hdfd78af_2
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/59/3f0cd96ea0b66e0c8bff3ae855ef56
Native ID: nf-593f0cd96ea0b66e0c8bff3ae855ef56-80de0

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 2.7 / 2
Memory (peak / alloc): 5.4 GB / 8.0 GB
Process I/O (rchar / wchar): 666.1 MB / 257.6 MB
Disk I/O (read / write): - / 254.8 MB
Host: i-060fd6816157acc2f ( spot)

Runtime

Submitted: Jan 27, 2026 4:47:05 PM
Completed: Jan 27, 2026 4:50:23 PM
Total Duration: 3m 17s

Phases

Queue: 12s
Execution: 3m 2s
Stage/Unstage: 3s

Attempt 2

Execution

Status: succeeded
Hash: 36/03b434
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/snpeff:5.1--hdfd78af_2
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/36/03b4342b9405f52c1ab482e4f072bf
Native ID: nf-3603b4342b9405f52c1ab482e4f072bf-250a1

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 3.2 / 2
Memory (peak / alloc): 3.0 GB / 8.0 GB
Process I/O (rchar / wchar): 164.7 MB / 3.2 MB
Disk I/O (read / write): - / 312.0 KB
Host: i-0520b16938838aa26 ( spot)

Runtime

Submitted: Jan 27, 2026 3:09:36 PM
Completed: Jan 27, 2026 3:10:25 PM
Total Duration: 48s

Phases

Queue: 20s
Execution: 24s
Stage/Unstage: 4s

Attempt 1

Execution

Status: succeeded
Hash: 05/408839
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/snpeff:5.1--hdfd78af_2
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/05/4088397df99672d69b944c7c0dc9b3
Native ID: nf-054088397df99672d69b944c7c0dc9b3-1aa6e

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 1.8 / 2
Memory (peak / alloc): 2.9 GB / 8.0 GB
Process I/O (rchar / wchar): 639.4 MB / 9.7 MB
Disk I/O (read / write): - / 6.9 MB
Host: i-039c5e56ef2df6f7a ( spot)

Runtime

Submitted: Jan 27, 2026 2:53:49 AM
Completed: Jan 27, 2026 2:55:11 AM
Total Duration: 1m 21s

Phases

Queue: 10s
Execution: 1m 8s
Stage/Unstage: 3s