NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:MSISENSOR2_MSI (1029_BICA-T1-TDNA-1_ABtest_SSF_signatera_tissue_33_vs_1029_BICA-N1-BDNA-1_ABtest_SSF_signatera_blood_32) - mipeters-sarek-binpacking-14 - Workflow Tracker

Runs
mipeters-sar..npacking-14
Tasks
MSISENSOR2_MSI (1029_BICA-T1-TDNA-1_ABtest_SSF_signatera_tissue_33_vs_1029_BICA-N1-BDNA-1_ABtest_SSF_signatera_blood_32)

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Task Info

Status: succeeded
Hash: c8a80e93f398
Process: NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:MSISENSOR2_MSI
Tag: 1029_BICA-T1-TDNA-1_ABtest_SSF_signatera_tissue_33_vs_1029_BICA-N1-BDNA-1_ABtest_SSF_signatera_blood_32
Attempts: 4

Attempt 4

Execution

Status: succeeded - cached
Hash: 10/34c076
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/msisensor2:0.1--hd03093a_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/10/34c076634fb1e58f0f0204fe78fee8
Native ID: nf-1034c076634fb1e58f0f0204fe78fee8-d030f

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 1.0 / 1
Memory (peak / alloc): 7.5 GB / 10.0 GB
Process I/O (rchar / wchar): 149.9 GB / 753.5 MB
Disk I/O (read / write): 91.0 GB / 761.5 MB
Host: i-015ca7ef1c334fac7 ( spot)

Runtime

Submitted: Jan 27, 2026 4:24:38 PM
Completed: Jan 27, 2026 6:18:59 PM
Total Duration: 1h 54m

Phases

Queue: 1m 25s
Execution: 1h 49m
Stage/Unstage: 3m 38s

Attempt 3

Execution

Status: aborted
Hash: 48/e8acdf
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/msisensor2:0.1--hd03093a_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/48/e8acdfb44dc4a5c7595d0a3193666d
Native ID: nf-48e8acdfb44dc4a5c7595d0a3193666d-4c991

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): - / 2
Memory (peak / alloc): - / 20.0 GB
Process I/O (rchar / wchar): - / -
Disk I/O (read / write): - / -
Host: i-0ca18d70a2aca1548 ( spot)

Runtime

Submitted: Jan 27, 2026 2:59:24 PM
Completed: Jan 27, 2026 4:20:43 PM
Total Duration: -

Phases

Queue: 16s
Execution: -
Stage/Unstage: -

Attempt 2

Execution

Status: failed
Hash: 26/f49a3a
Exit Code: 143
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/msisensor2:0.1--hd03093a_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/26/f49a3adc567d8410507b0ba9e9a5d0
Native ID: nf-26f49a3adc567d8410507b0ba9e9a5d0-8a485

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): - / 1
Memory (peak / alloc): - / 10.0 GB
Process I/O (rchar / wchar): - / -
Disk I/O (read / write): - / -
Host: i-0ca18d70a2aca1548 ( spot)

Runtime

Submitted: Jan 27, 2026 2:53:47 PM
Completed: Jan 27, 2026 2:59:18 PM
Total Duration: 5m 30s

Phases

Queue: 1m 13s
Execution: 4m 17s
Stage/Unstage: 0s

Attempt 1

Execution

Status: succeeded
Hash: c7/21d8c8
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/msisensor2:0.1--hd03093a_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c7/21d8c80715a63bcb04be4548cdf621
Native ID: nf-c721d8c80715a63bcb04be4548cdf621-99a0a

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 1.0 / 2
Memory (peak / alloc): 7.9 GB / 12.0 GB
Process I/O (rchar / wchar): 48.5 GB / 2.2 MB
Disk I/O (read / write): 44.4 GB / 3.8 MB
Host: i-09db62cc8a936d853 ( spot)

Runtime

Submitted: Jan 27, 2026 2:20:18 AM
Completed: Jan 27, 2026 2:53:08 AM
Total Duration: 32m 49s

Phases

Queue: 4s
Execution: 29m 50s
Stage/Unstage: 2m 55s