NFCORE_SAREK:PREPARE_REFERENCE_CNVKIT:CNVKIT_REFERENCE (Homo_sapiens_assembly38.fasta) - mipeters-sarek-binpacking-14 - Workflow Tracker

Runs
mipeters-sar..npacking-14
Tasks
CNVKIT_REFERENCE (Homo_sapiens_assembly38.fasta)

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Task Info

Status: succeeded
Hash: ef3ae41a2259
Process: NFCORE_SAREK:PREPARE_REFERENCE_CNVKIT:CNVKIT_REFERENCE
Tag: Homo_sapiens_assembly38.fasta
Attempts: 2

Attempt 2

Execution

Status: succeeded - cached
Hash: 05/383e2a
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/cnvkit:0.9.11--pyhdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/05/383e2ae3f31827d47d9f14cbad15fc
Native ID: nf-05383e2ae3f31827d47d9f14cbad15fc-f58a0

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 1.4 / 2
Memory (peak / alloc): 462.3 MB / 12.0 GB
Process I/O (rchar / wchar): 6.0 GB / 449.6 KB
Disk I/O (read / write): - / 468.0 KB
Host: i-01a34259285a7ffb0 ( spot)

Runtime

Submitted: Jan 27, 2026 11:51:08 AM
Completed: Jan 27, 2026 11:52:30 AM
Total Duration: 1m 21s

Phases

Queue: 2s
Execution: 1m 7s
Stage/Unstage: 12s

Attempt 1

Execution

Status: succeeded
Hash: 02/924926
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/cnvkit:0.9.11--pyhdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/02/92492607eb8dbac0fc3144b5d4a7ef
Native ID: nf-0292492607eb8dbac0fc3144b5d4a7ef-9da9b

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 1.4 / 2
Memory (peak / alloc): 275.1 MB / 12.0 GB
Process I/O (rchar / wchar): 5.9 GB / 10.5 MB
Disk I/O (read / write): - / 10.5 MB
Host: i-03c74f62a6cf01df8 ( spot)

Runtime

Submitted: Jan 26, 2026 8:45:56 PM
Completed: Jan 26, 2026 8:47:03 PM
Total Duration: 1m 6s

Phases

Queue: 3s
Execution: 53s
Stage/Unstage: 10s