NFCORE_SAREK:SAREK:VCF_ANNOTATE_ALL:VCF_ANNOTATE_REPEATMASKER:BCFTOOLS_ANNOTATE (1029_BICA-T1-TDNA-1_ABtest_SSF_signatera_tissue_33_vs_1029_BICA-N1-BDNA-1_ABtest_SSF_signatera_blood_32;mutect2) - mipeters-sarek-binpacking-14 - Workflow Tracker

Runs
mipeters-sar..npacking-14
Tasks
BCFTOOLS_ANNOTATE (1029_BICA-T1-TDNA-1_ABtest_SSF_signatera_tissue_33_vs_1029_BICA-N1-BDNA-1_ABtest_SSF_signatera_blood_32;mutect2)

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Task Info

Status: succeeded
Hash: f86d51863867
Process: NFCORE_SAREK:SAREK:VCF_ANNOTATE_ALL:VCF_ANNOTATE_REPEATMASKER:BCFTOOLS_ANNOTATE
Tag: 1029_BICA-T1-TDNA-1_ABtest_SSF_signatera_tissue_33_vs_1029_BICA-N1-BDNA-1_ABtest_SSF_signatera_blood_32;mutect2
Attempts: 5

Attempt 5

Execution

Status: succeeded
Hash: 58/e3c0a7
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/bcftools:1.20--h8b25389_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/58/e3c0a7bfba1e2986ce95cabcfa2d1e
Native ID: nf-58e3c0a7bfba1e2986ce95cabcfa2d1e-f2bfc

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 4.9 / 1
Memory (peak / alloc): 385.0 MB / 1.0 GB
Process I/O (rchar / wchar): 120.3 MB / 35.3 MB
Disk I/O (read / write): - / 35.3 MB
Host: i-0f6438535f34a7c9a ( spot)

Runtime

Submitted: Jan 28, 2026 12:54:11 PM
Completed: Jan 28, 2026 12:54:23 PM
Total Duration: 11s

Phases

Queue: 3s
Execution: 5s
Stage/Unstage: 3s

Attempt 4

Execution

Status: succeeded
Hash: 09/bacc26
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/bcftools:1.20--h8b25389_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/09/bacc2627aad39381dd4258dce89bbb
Native ID: nf-09bacc2627aad39381dd4258dce89bbb-63596

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 2.3 / 1
Memory (peak / alloc): 392.2 MB / 1.0 GB
Process I/O (rchar / wchar): 477.1 MB / 216.1 MB
Disk I/O (read / write): - / 216.3 MB
Host: i-0e8fb5e3e89f4f5e2 ( spot)

Runtime

Submitted: Jan 27, 2026 11:10:41 PM
Completed: Jan 27, 2026 11:11:16 PM
Total Duration: 34s

Phases

Queue: 4s
Execution: 26s
Stage/Unstage: 4s

Attempt 3

Execution

Status: succeeded
Hash: 6b/34df2b
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/bcftools:1.20--h8b25389_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6b/34df2b8b49f14409d507369ce49676
Native ID: nf-6b34df2b8b49f14409d507369ce49676-25eef

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 10.5 / 1
Memory (peak / alloc): 271.9 MB / 1.0 GB
Process I/O (rchar / wchar): 41.0 MB / 1.1 MB
Disk I/O (read / write): - / 1.1 MB
Host: i-0766e96e580fccfd8 ( spot)

Runtime

Submitted: Jan 27, 2026 4:48:45 PM
Completed: Jan 27, 2026 4:48:54 PM
Total Duration: 8s

Phases

Queue: 4s
Execution: 2s
Stage/Unstage: 2s

Attempt 2

Execution

Status: succeeded
Hash: eb/34bd42
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/bcftools:1.20--h8b25389_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/eb/34bd42d5e8b655fa4465f497735019
Native ID: nf-eb34bd42d5e8b655fa4465f497735019-bd9b9

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 5.4 / 1
Memory (peak / alloc): 390.8 MB / 1.0 GB
Process I/O (rchar / wchar): 89.0 MB / 27.2 MB
Disk I/O (read / write): - / 27.3 MB
Host: i-0520b16938838aa26 ( spot)

Runtime

Submitted: Jan 27, 2026 3:17:31 PM
Completed: Jan 27, 2026 3:17:42 PM
Total Duration: 10s

Phases

Queue: 4s
Execution: 4s
Stage/Unstage: 2s

Attempt 1

Execution

Status: succeeded
Hash: 6d/537d71
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/bcftools:1.20--h8b25389_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6d/537d71c8877771414cd4b5c4386bae
Native ID: nf-6d537d71c8877771414cd4b5c4386bae-8c135

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 1.5 / 1
Memory (peak / alloc): 376.6 MB / 2.0 GB
Process I/O (rchar / wchar): 49.3 MB / 4.7 MB
Disk I/O (read / write): - / 4.7 MB
Host: i-03b0a6e88500040d5 ( spot)

Runtime

Submitted: Jan 27, 2026 3:02:20 AM
Completed: Jan 27, 2026 3:02:32 AM
Total Duration: 11s

Phases

Queue: 6s
Execution: 3s
Stage/Unstage: 2s