succeeded NFCORE_SAREK:PREPARE_GENOME:MSISENSOR2_SCAN (Homo_sapiens_assembly38.fasta) 2m 4s 4s 1m 45s 15s 387.0 MB 100% 3.0 GB 1.5 GB 0 bytes 1.5 GB 1
succeeded NFCORE_SAREK:PREPARE_GENOME:MSISENSORPRO_SCAN (Homo_sapiens_assembly38) 1m 40s 4s 1m 25s 11s 443.6 MB 100% 3.0 GB 79.7 MB 0 bytes 79.5 MB 1
succeeded NFCORE_SAREK:PREPARE_GENOME:UNZIP_ALLELES (G1000_alleles_hg38.zip) 12s 10s - - 11.2 MB 104% 9.8 MB 30.0 MB 0 bytes 30.0 MB 1
succeeded NFCORE_SAREK:PREPARE_GENOME:UNZIP_GC (GC_G1000_hg38.zip) 24s 10s 3s 11s 11.0 MB 100% 100.1 MB 345.6 MB 0 bytes 345.6 MB 1
succeeded NFCORE_SAREK:PREPARE_GENOME:UNZIP_LOCI (G1000_loci_hg38.zip) 11s 9s - - 11.1 MB 102% 8.3 MB 33.1 MB 0 bytes 33.1 MB 1
succeeded NFCORE_SAREK:PREPARE_GENOME:UNZIP_RT (RT_G1000_hg38.zip) 10s 3s 2s 5s 11.1 MB 86% 101.6 MB 387.4 MB 0 bytes 387.5 MB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:CREATE_INTERVALS_BED (xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38.bed) 14s 10s - - 5.5 MB 105% 4.6 MB 4.6 MB 0 bytes 4.6 MB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_COMBINED (xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38) 11s 9s - - 6.0 MB 107% 6.0 MB 1.7 MB 0 bytes 1.7 MB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chr12_122788758-122788929) 11s 9s - - 6.0 MB 112% 2.0 MB 535.6 KB 0 bytes 540.0 KB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chr1_69091-70008) 5s 3s - - 6.1 MB 97% 2.1 MB 595.3 KB 0 bytes 600.0 KB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chr22_46626800-46626961) 11s 9s - - 3.2 MB 112% 350.9 KB 77.4 KB 0 bytes 84.0 KB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chr6_29306690-29307655) 11s 9s - - 5.8 MB 112% 2.0 MB 566.8 KB 0 bytes 572.0 KB 1
succeeded NFCORE_SAREK:PREPARE_REFERENCE_CNVKIT:CNVKIT_ANTITARGET (intervals) 21s 14s 5s 2s 258.8 MB 615% 117.2 MB 1.4 MB 0 bytes 1.4 MB 1
succeeded NFCORE_SAREK:PREPARE_REFERENCE_CNVKIT:CNVKIT_REFERENCE (Homo_sapiens_assembly38.fasta) 2m 10s 31s 1m 29s 10s 274.8 MB 127% 5.9 GB 10.5 MB 0 bytes 10.6 MB 1
succeeded NFCORE_SAREK:PUBLISH_INPUT_SAMPLESHEET (input_samplesheet) 5s 3s 0s 1s 0 bytes 79% 130.8 KB 1.5 KB 0 bytes 4.0 KB 1
succeeded NFCORE_SAREK:SAREK:AGGREGATE_VARIANT_QC (variant_qc_aggregation) 11s 9s 0s 1s 16.9 MB 104% 2.4 MB 842 bytes 48.0 KB 12.0 KB 2
succeeded NFCORE_SAREK:SAREK:BAM_APPLYBQSR:GATK4_APPLYBQSR (1029_BICA-N1-BDNA-1_ABtest_SSF_signatera_blood_32) 11m 1s 1s 9m 53s 1m 7s 720.5 MB 151% 3.3 GB 5.3 GB 0 bytes 5.3 GB 1
succeeded NFCORE_SAREK:SAREK:BAM_APPLYBQSR:GATK4_APPLYBQSR (1029_BICA-N1-BDNA-1_ABtest_SSF_signatera_blood_32) 11m 7s 2s 9m 59s 1m 6s 757.1 MB 149% 3.2 GB 5.3 GB 0 bytes 5.3 GB 1
succeeded NFCORE_SAREK:SAREK:BAM_APPLYBQSR:GATK4_APPLYBQSR (1029_BICA-N1-BDNA-1_ABtest_SSF_signatera_blood_32) 11m 48s 2s 10m 39s 1m 7s 939.1 MB 149% 3.5 GB 5.7 GB 0 bytes 5.7 GB 1
succeeded NFCORE_SAREK:SAREK:BAM_APPLYBQSR:GATK4_APPLYBQSR (1029_BICA-N1-BDNA-1_ABtest_SSF_signatera_blood_32) 4m 13s 8s 2m 59s 1m 6s 610.1 MB 162% 407.0 MB 506.9 MB 0 bytes 506.9 MB 1
35 items found |
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