succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chr8_60001-7617127;null) 1m 9s 1m 8s - - 3.3 MB 119% 105.7 KB 3.3 KB 0 bytes 12.0 KB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chr8_85714223-145078636;null) 1m 9s 1m 8s - - 3.2 MB 109% 105.7 KB 3.4 KB 0 bytes 12.0 KB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chr9_10001-41225986;null) 42s 41s - - 3.3 MB 121% 109.4 KB 3.4 KB 0 bytes 12.0 KB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chr9_134185537-138334717;null) 46s 45s - - 3.3 MB 64% 109.3 KB 3.5 KB 0 bytes 12.0 KB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chr9_43282957-43332174;null) 42s 41s - - 3.2 MB 113% 110.0 KB 3.7 KB 0 bytes 12.0 KB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chrX_116595567-120879381;null) 45s 44s - - 3.3 MB 148% 109.3 KB 3.4 KB 0 bytes 12.0 KB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chrX_144475607-156030895;null) 7s 6s - - 3.2 MB 67% 109.0 KB 3.4 KB 0 bytes 12.0 KB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chrX_37285838-49348394;null) 1m 7s 1m 6s - - 3.3 MB 116% 105.6 KB 3.3 KB 0 bytes 12.0 KB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chrX_49528395-50228964;null) 7s 5s - - 3.3 MB 57% 109.0 KB 3.4 KB 0 bytes 12.0 KB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chrX_62462543-114281198;null) 6s 4s - - 3.3 MB 63% 109.0 KB 3.4 KB 0 bytes 12.0 KB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chrY_20257794-21739542;null) 1m 16s 1m 14s - - 3.3 MB 153% 109.7 KB 3.4 KB 0 bytes 12.0 KB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chrY_2781480-9046914;null) 54s 53s - - 3.3 MB 40% 106.5 KB 3.7 KB 0 bytes 12.0 KB 1
succeeded NFCORE_SAREK:PUBLISH_INPUT_SAMPLESHEET (input_samplesheet) 1m 21s 1m 19s 0s 1s 0 bytes 237% 107.0 KB 1.9 KB 0 bytes 4.0 KB 1
succeeded NFCORE_SAREK:SAREK:CRAM_HLATYPING_ALL:CRAM_FILTER_HLA (1029_BA0-N2-BDNA-1_2375WFLT3_s20) 6m 25s 1m 27s 2m 46s 2m 11s 1.8 GB 519% 79.8 GB 41.0 GB 17.4 GB 1.0 GB 1
succeeded NFCORE_SAREK:SAREK:CRAM_HLATYPING_ALL:CRAM_FILTER_HLA (1029_BBCQ-N1-BDNA-1_2375WFLT3_s21) 6m 37s 1m 26s 2m 58s 2m 12s 1.8 GB 498% 79.0 GB 40.7 GB 10.2 GB 1.0 GB 1
succeeded NFCORE_SAREK:SAREK:CRAM_HLATYPING_ALL:FASTQ_HLATYPING_OPTITYPE:OPTITYPE (1029_BA0-N2-BDNA-1_2375WFLT3_s20) 1h 51m 11s 1h 51m 3s 22.8 GB 108% 722.1 MB 88.9 MB 0 bytes 89.1 MB 1
succeeded NFCORE_SAREK:SAREK:CRAM_HLATYPING_ALL:FASTQ_HLATYPING_OPTITYPE:OPTITYPE (1029_BBCQ-N1-BDNA-1_2375WFLT3_s21) 1h 29m 8s 1h 28m 3s 23.4 GB 110% 730.8 MB 96.1 MB 0 bytes 96.2 MB 1
succeeded NFCORE_SAREK:SAREK:CRAM_HLATYPING_ALL:HLA_CONVERT_OPTITYPE (1029_BA0-N2-BDNA-1_2375WFLT3_s20) 10s 8s 0s 1s 14.3 MB 99% 1.0 MB 2.1 KB 0 bytes 12.0 KB 1
succeeded NFCORE_SAREK:SAREK:CRAM_HLATYPING_ALL:HLA_CONVERT_OPTITYPE (1029_BBCQ-N1-BDNA-1_2375WFLT3_s21) 8s 7s 0s 0s 14.5 MB 118% 1.0 MB 2.1 KB 0 bytes 12.0 KB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLEQC:CRAM_QC_RECAL:MOSDEPTH (1029_BA0-N2-BDNA-1_2375WFLT3_s20) 5m 38s 1m 23s 2m 1s 2m 14s 1.9 GB 391% 39.3 GB 42.5 MB 39.0 GB 42.8 MB 1
88 items found |
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