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1029_BBS1-T1-TDNA-1_23FC2GLT4_s23_vs_1029_BBS1-N1-BDNA-1_2375WFLT3_s23.strelka.somatic_snvs.bcftools_stats.txt
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mipeters-std-largest2-smallest2-69814f07
Published
Feb 02, 2026 6:52 PM

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# This file was produced by bcftools stats (1.20+htslib-1.20) and can be plotted using plot-vcfstats.
# The command line was:	bcftools stats  1029_BBS1-T1-TDNA-1_23FC2GLT4_s23_vs_1029_BBS1-N1-BDNA-1_2375WFLT3_s23.strelka.somatic_snvs.vcf.gz
#
# Definition of sets:
# ID	[2]id	[3]tab-separated file names
ID	0	1029_BBS1-T1-TDNA-1_23FC2GLT4_s23_vs_1029_BBS1-N1-BDNA-1_2375WFLT3_s23.strelka.somatic_snvs.vcf.gz
# SN, Summary numbers:
#   number of records   .. number of data rows in the VCF
#   number of no-ALTs   .. reference-only sites, ALT is either "." or identical to REF
#   number of SNPs      .. number of rows with a SNP
#   number of MNPs      .. number of rows with a MNP, such as CC>TT
#   number of indels    .. number of rows with an indel
#   number of others    .. number of rows with other type, for example a symbolic allele or
#                          a complex substitution, such as ACT>TCGA
#   number of multiallelic sites     .. number of rows with multiple alternate alleles
#   number of multiallelic SNP sites .. number of rows with multiple alternate alleles, all SNPs
# 
#   Note that rows containing multiple types will be counted multiple times, in each
#   counter. For example, a row with a SNP and an indel increments both the SNP and
#   the indel counter.
# 
# SN	[2]id	[3]key	[4]value
SN	0	number of samples:	2
SN	0	number of records:	12919
SN	0	number of no-ALTs:	0
SN	0	number of SNPs:	12919
SN	0	number of MNPs:	0
SN	0	number of indels:	0
SN	0	number of others:	0
SN	0	number of multiallelic sites:	0
SN	0	number of multiallelic SNP sites:	0
# TSTV, transitions/transversions:
# TSTV	[2]id	[3]ts	[4]tv	[5]ts/tv	[6]ts (1st ALT)	[7]tv (1st ALT)	[8]ts/tv (1st ALT)
TSTV	0	8292	4627	1.79	8292	4627	1.79
# SiS, Singleton stats:
# SiS	[2]id	[3]allele count	[4]number of SNPs	[5]number of transitions	[6]number of transversions	[7]number of indels	[8]repeat-consistent	[9]repeat-inconsistent	[10]not applicable
SiS	0	1	12919	8292	4627	0	0	0	0
# AF, Stats by non-reference allele frequency:
# AF	[2]id	[3]allele frequency	[4]number of SNPs	[5]number of transitions	[6]number of transversions	[7]number of indels	[8]repeat-consistent	[9]repeat-inconsistent	[10]not applicable
AF	0	0.000000	12919	8292	4627	0	0	0	0
# QUAL, Stats by quality
# QUAL	[2]id	[3]Quality	[4]number of SNPs	[5]number of transitions (1st ALT)	[6]number of transversions (1st ALT)	[7]number of indels
QUAL	0	.	12919	8292	4627	0
# IDD, InDel distribution:
# IDD	[2]id	[3]length (deletions negative)	[4]number of sites	[5]number of genotypes	[6]mean VAF
# ST, Substitution types:
# ST	[2]id	[3]type	[4]count
ST	0	A>C	394
ST	0	A>G	1694
ST	0	A>T	159
ST	0	C>A	691
ST	0	C>G	1088
ST	0	C>T	2392
ST	0	G>A	2451
ST	0	G>C	1064
ST	0	G>T	686
ST	0	T>A	177
ST	0	T>C	1755
ST	0	T>G	368
# DP, Depth distribution
# DP	[2]id	[3]bin	[4]number of genotypes	[5]fraction of genotypes (%)	[6]number of sites	[7]fraction of sites (%)
DP	0	7	0	0.000000	2	0.015481
DP	0	8	0	0.000000	4	0.030962
DP	0	9	0	0.000000	2	0.015481
DP	0	10	0	0.000000	2	0.015481
DP	0	11	0	0.000000	2	0.015481
DP	0	12	0	0.000000	3	0.023222
DP	0	13	0	0.000000	2	0.015481
DP	0	14	0	0.000000	5	0.038703
DP	0	15	0	0.000000	15	0.116108
DP	0	16	0	0.000000	5	0.038703
DP	0	17	0	0.000000	4	0.030962
DP	0	18	0	0.000000	8	0.061924
DP	0	19	0	0.000000	7	0.054184
DP	0	20	0	0.000000	7	0.054184
DP	0	21	0	0.000000	7	0.054184
DP	0	22	0	0.000000	6	0.046443
DP	0	23	0	0.000000	16	0.123849
DP	0	24	0	0.000000	4	0.030962
DP	0	25	0	0.000000	7	0.054184
DP	0	26	0	0.000000	4	0.030962
DP	0	27	0	0.000000	4	0.030962
DP	0	28	0	0.000000	5	0.038703
DP	0	29	0	0.000000	4	0.030962
DP	0	30	0	0.000000	1	0.007741
DP	0	31	0	0.000000	2	0.015481
DP	0	32	0	0.000000	1	0.007741
DP	0	33	0	0.000000	3	0.023222
DP	0	34	0	0.000000	5	0.038703
DP	0	37	0	0.000000	3	0.023222
DP	0	38	0	0.000000	2	0.015481
DP	0	39	0	0.000000	4	0.030962
DP	0	40	0	0.000000	3	0.023222
DP	0	42	0	0.000000	3	0.023222
DP	0	43	0	0.000000	1	0.007741
DP	0	44	0	0.000000	3	0.023222
DP	0	45	0	0.000000	3	0.023222
DP	0	46	0	0.000000	2	0.015481
DP	0	47	0	0.000000	2	0.015481
DP	0	48	0	0.000000	1	0.007741
DP	0	49	0	0.000000	1	0.007741
DP	0	50	0	0.000000	3	0.023222
DP	0	51	0	0.000000	4	0.030962
DP	0	52	0	0.000000	3	0.023222
DP	0	55	0	0.000000	1	0.007741
DP	0	56	0	0.000000	2	0.015481
DP	0	57	0	0.000000	1	0.007741
DP	0	59	0	0.000000	1	0.007741
DP	0	60	0	0.000000	3	0.023222
DP	0	61	0	0.000000	3	0.023222
DP	0	62	0	0.000000	2	0.015481
DP	0	63	0	0.000000	1	0.007741
DP	0	64	0	0.000000	1	0.007741
DP	0	67	0	0.000000	3	0.023222
DP	0	68	0	0.000000	2	0.015481
DP	0	69	0	0.000000	1	0.007741
DP	0	70	0	0.000000	1	0.007741
DP	0	73	0	0.000000	2	0.015481
DP	0	76	0	0.000000	1	0.007741
DP	0	78	0	0.000000	1	0.007741
DP	0	79	0	0.000000	1	0.007741
DP	0	80	0	0.000000	2	0.015481
DP	0	82	0	0.000000	2	0.015481
DP	0	83	0	0.000000	1	0.007741
DP	0	85	0	0.000000	3	0.023222
DP	0	87	0	0.000000	3	0.023222
DP	0	88	0	0.000000	1	0.007741
DP	0	89	0	0.000000	2	0.015481
DP	0	90	0	0.000000	2	0.015481
DP	0	92	0	0.000000	1	0.007741
DP	0	93	0	0.000000	3	0.023222
DP	0	95	0	0.000000	2	0.015481
DP	0	97	0	0.000000	2	0.015481
DP	0	99	0	0.000000	1	0.007741
DP	0	100	0	0.000000	1	0.007741
DP	0	102	0	0.000000	1	0.007741
DP	0	104	0	0.000000	3	0.023222
DP	0	105	0	0.000000	4	0.030962
DP	0	113	0	0.000000	1	0.007741
DP	0	115	0	0.000000	1	0.007741
DP	0	117	0	0.000000	1	0.007741
DP	0	118	0	0.000000	3	0.023222
DP	0	119	0	0.000000	2	0.015481
DP	0	121	0	0.000000	1	0.007741
DP	0	122	0	0.000000	1	0.007741
DP	0	125	0	0.000000	1	0.007741
DP	0	127	0	0.000000	2	0.015481
DP	0	128	0	0.000000	1	0.007741
DP	0	130	0	0.000000	1	0.007741
DP	0	132	0	0.000000	2	0.015481
DP	0	134	0	0.000000	1	0.007741
DP	0	138	0	0.000000	2	0.015481
DP	0	141	0	0.000000	2	0.015481
DP	0	144	0	0.000000	2	0.015481
DP	0	145	0	0.000000	2	0.015481
DP	0	146	0	0.000000	1	0.007741
DP	0	148	0	0.000000	1	0.007741
DP	0	149	0	0.000000	2	0.015481
DP	0	150	0	0.000000	4	0.030962
DP	0	151	0	0.000000	1	0.007741
DP	0	153	0	0.000000	1	0.007741
DP	0	154	0	0.000000	1	0.007741
DP	0	156	0	0.000000	4	0.030962
DP	0	160	0	0.000000	1	0.007741
DP	0	162	0	0.000000	3	0.023222
DP	0	163	0	0.000000	1	0.007741
DP	0	164	0	0.000000	2	0.015481
DP	0	170	0	0.000000	1	0.007741
DP	0	174	0	0.000000	2	0.015481
DP	0	175	0	0.000000	1	0.007741
DP	0	177	0	0.000000	3	0.023222
DP	0	179	0	0.000000	1	0.007741
DP	0	181	0	0.000000	2	0.015481
DP	0	184	0	0.000000	2	0.015481
DP	0	185	0	0.000000	1	0.007741
DP	0	188	0	0.000000	1	0.007741
DP	0	190	0	0.000000	2	0.015481
DP	0	191	0	0.000000	1	0.007741
DP	0	193	0	0.000000	3	0.023222
DP	0	196	0	0.000000	1	0.007741
DP	0	198	0	0.000000	2	0.015481
DP	0	199	0	0.000000	3	0.023222
DP	0	200	0	0.000000	1	0.007741
DP	0	201	0	0.000000	1	0.007741
DP	0	203	0	0.000000	2	0.015481
DP	0	209	0	0.000000	2	0.015481
DP	0	210	0	0.000000	1	0.007741
DP	0	211	0	0.000000	3	0.023222
DP	0	212	0	0.000000	4	0.030962
DP	0	214	0	0.000000	1	0.007741
DP	0	216	0	0.000000	1	0.007741
DP	0	218	0	0.000000	2	0.015481
DP	0	219	0	0.000000	2	0.015481
DP	0	220	0	0.000000	2	0.015481
DP	0	221	0	0.000000	1	0.007741
DP	0	222	0	0.000000	2	0.015481
DP	0	224	0	0.000000	1	0.007741
DP	0	226	0	0.000000	2	0.015481
DP	0	227	0	0.000000	1	0.007741
DP	0	228	0	0.000000	1	0.007741
DP	0	229	0	0.000000	5	0.038703
DP	0	232	0	0.000000	1	0.007741
DP	0	234	0	0.000000	4	0.030962
DP	0	236	0	0.000000	2	0.015481
DP	0	237	0	0.000000	1	0.007741
DP	0	240	0	0.000000	2	0.015481
DP	0	243	0	0.000000	1	0.007741
DP	0	247	0	0.000000	2	0.015481
DP	0	248	0	0.000000	2	0.015481
DP	0	249	0	0.000000	2	0.015481
DP	0	250	0	0.000000	1	0.007741
DP	0	251	0	0.000000	2	0.015481
DP	0	252	0	0.000000	1	0.007741
DP	0	253	0	0.000000	2	0.015481
DP	0	254	0	0.000000	1	0.007741
DP	0	255	0	0.000000	2	0.015481
DP	0	260	0	0.000000	1	0.007741
DP	0	264	0	0.000000	3	0.023222
DP	0	267	0	0.000000	4	0.030962
DP	0	268	0	0.000000	3	0.023222
DP	0	271	0	0.000000	1	0.007741
DP	0	272	0	0.000000	1	0.007741
DP	0	274	0	0.000000	1	0.007741
DP	0	275	0	0.000000	1	0.007741
DP	0	276	0	0.000000	2	0.015481
DP	0	278	0	0.000000	2	0.015481
DP	0	281	0	0.000000	1	0.007741
DP	0	282	0	0.000000	2	0.015481
DP	0	283	0	0.000000	1	0.007741
DP	0	288	0	0.000000	2	0.015481
DP	0	289	0	0.000000	1	0.007741
DP	0	290	0	0.000000	1	0.007741
DP	0	291	0	0.000000	1	0.007741
DP	0	292	0	0.000000	1	0.007741
DP	0	293	0	0.000000	1	0.007741
DP	0	294	0	0.000000	2	0.015481
DP	0	295	0	0.000000	1	0.007741
DP	0	296	0	0.000000	1	0.007741
DP	0	297	0	0.000000	1	0.007741
DP	0	298	0	0.000000	1	0.007741
DP	0	299	0	0.000000	2	0.015481
DP	0	300	0	0.000000	1	0.007741
DP	0	303	0	0.000000	1	0.007741
DP	0	304	0	0.000000	2	0.015481
DP	0	306	0	0.000000	1	0.007741
DP	0	309	0	0.000000	1	0.007741
DP	0	310	0	0.000000	1	0.007741
DP	0	311	0	0.000000	1	0.007741
DP	0	313	0	0.000000	2	0.015481
DP	0	314	0	0.000000	1	0.007741
DP	0	315	0	0.000000	1	0.007741
DP	0	316	0	0.000000	1	0.007741
DP	0	317	0	0.000000	2	0.015481
DP	0	319	0	0.000000	2	0.015481
DP	0	320	0	0.000000	2	0.015481
DP	0	323	0	0.000000	1	0.007741
DP	0	325	0	0.000000	1	0.007741
DP	0	326	0	0.000000	1	0.007741
DP	0	329	0	0.000000	1	0.007741
DP	0	330	0	0.000000	1	0.007741
DP	0	332	0	0.000000	2	0.015481
DP	0	335	0	0.000000	2	0.015481
DP	0	336	0	0.000000	1	0.007741
DP	0	337	0	0.000000	2	0.015481
DP	0	338	0	0.000000	2	0.015481
DP	0	339	0	0.000000	2	0.015481
DP	0	340	0	0.000000	1	0.007741
DP	0	341	0	0.000000	2	0.015481
DP	0	342	0	0.000000	4	0.030962
DP	0	344	0	0.000000	1	0.007741
DP	0	345	0	0.000000	1	0.007741
DP	0	346	0	0.000000	2	0.015481
DP	0	347	0	0.000000	2	0.015481
DP	0	351	0	0.000000	1	0.007741
DP	0	355	0	0.000000	1	0.007741
DP	0	357	0	0.000000	2	0.015481
DP	0	359	0	0.000000	2	0.015481
DP	0	361	0	0.000000	3	0.023222
DP	0	363	0	0.000000	2	0.015481
DP	0	364	0	0.000000	2	0.015481
DP	0	365	0	0.000000	2	0.015481
DP	0	366	0	0.000000	3	0.023222
DP	0	367	0	0.000000	1	0.007741
DP	0	368	0	0.000000	1	0.007741
DP	0	369	0	0.000000	1	0.007741
DP	0	371	0	0.000000	1	0.007741
DP	0	372	0	0.000000	3	0.023222
DP	0	373	0	0.000000	1	0.007741
DP	0	374	0	0.000000	3	0.023222
DP	0	375	0	0.000000	2	0.015481
DP	0	377	0	0.000000	1	0.007741
DP	0	378	0	0.000000	2	0.015481
DP	0	379	0	0.000000	3	0.023222
DP	0	380	0	0.000000	4	0.030962
DP	0	382	0	0.000000	1	0.007741
DP	0	383	0	0.000000	1	0.007741
DP	0	384	0	0.000000	1	0.007741
DP	0	386	0	0.000000	2	0.015481
DP	0	388	0	0.000000	5	0.038703
DP	0	390	0	0.000000	4	0.030962
DP	0	391	0	0.000000	4	0.030962
DP	0	392	0	0.000000	2	0.015481
DP	0	394	0	0.000000	1	0.007741
DP	0	395	0	0.000000	1	0.007741
DP	0	396	0	0.000000	2	0.015481
DP	0	399	0	0.000000	2	0.015481
DP	0	401	0	0.000000	1	0.007741
DP	0	402	0	0.000000	2	0.015481
DP	0	404	0	0.000000	1	0.007741
DP	0	406	0	0.000000	2	0.015481
DP	0	408	0	0.000000	3	0.023222
DP	0	410	0	0.000000	2	0.015481
DP	0	411	0	0.000000	2	0.015481
DP	0	413	0	0.000000	1	0.007741
DP	0	414	0	0.000000	2	0.015481
DP	0	415	0	0.000000	1	0.007741
DP	0	416	0	0.000000	3	0.023222
DP	0	417	0	0.000000	1	0.007741
DP	0	418	0	0.000000	1	0.007741
DP	0	421	0	0.000000	5	0.038703
DP	0	422	0	0.000000	1	0.007741
DP	0	424	0	0.000000	2	0.015481
DP	0	426	0	0.000000	3	0.023222
DP	0	427	0	0.000000	2	0.015481
DP	0	428	0	0.000000	1	0.007741
DP	0	429	0	0.000000	3	0.023222
DP	0	430	0	0.000000	1	0.007741
DP	0	431	0	0.000000	3	0.023222
DP	0	432	0	0.000000	3	0.023222
DP	0	433	0	0.000000	1	0.007741
DP	0	434	0	0.000000	2	0.015481
DP	0	435	0	0.000000	1	0.007741
DP	0	436	0	0.000000	3	0.023222
DP	0	437	0	0.000000	3	0.023222
DP	0	438	0	0.000000	1	0.007741
DP	0	439	0	0.000000	4	0.030962
DP	0	440	0	0.000000	2	0.015481
DP	0	441	0	0.000000	5	0.038703
DP	0	443	0	0.000000	2	0.015481
DP	0	444	0	0.000000	1	0.007741
DP	0	445	0	0.000000	2	0.015481
DP	0	446	0	0.000000	2	0.015481
DP	0	447	0	0.000000	2	0.015481
DP	0	448	0	0.000000	2	0.015481
DP	0	449	0	0.000000	2	0.015481
DP	0	450	0	0.000000	1	0.007741
DP	0	452	0	0.000000	2	0.015481
DP	0	454	0	0.000000	2	0.015481
DP	0	455	0	0.000000	3	0.023222
DP	0	456	0	0.000000	2	0.015481
DP	0	457	0	0.000000	2	0.015481
DP	0	458	0	0.000000	3	0.023222
DP	0	459	0	0.000000	3	0.023222
DP	0	460	0	0.000000	2	0.015481
DP	0	461	0	0.000000	5	0.038703
DP	0	462	0	0.000000	2	0.015481
DP	0	463	0	0.000000	1	0.007741
DP	0	464	0	0.000000	3	0.023222
DP	0	466	0	0.000000	1	0.007741
DP	0	467	0	0.000000	2	0.015481
DP	0	468	0	0.000000	2	0.015481
DP	0	469	0	0.000000	4	0.030962
DP	0	470	0	0.000000	3	0.023222
DP	0	472	0	0.000000	2	0.015481
DP	0	473	0	0.000000	1	0.007741
DP	0	474	0	0.000000	3	0.023222
DP	0	475	0	0.000000	1	0.007741
DP	0	476	0	0.000000	3	0.023222
DP	0	479	0	0.000000	1	0.007741
DP	0	480	0	0.000000	1	0.007741
DP	0	481	0	0.000000	3	0.023222
DP	0	482	0	0.000000	3	0.023222
DP	0	485	0	0.000000	3	0.023222
DP	0	486	0	0.000000	2	0.015481
DP	0	488	0	0.000000	1	0.007741
DP	0	489	0	0.000000	4	0.030962
DP	0	490	0	0.000000	1	0.007741
DP	0	491	0	0.000000	2	0.015481
DP	0	492	0	0.000000	1	0.007741
DP	0	493	0	0.000000	2	0.015481
DP	0	494	0	0.000000	5	0.038703
DP	0	495	0	0.000000	1	0.007741
DP	0	496	0	0.000000	1	0.007741
DP	0	497	0	0.000000	1	0.007741
DP	0	498	0	0.000000	1	0.007741
DP	0	499	0	0.000000	6	0.046443
DP	0	500	0	0.000000	2	0.015481
DP	0	>500	0	0.000000	12220	94.589365