File Info

Filename
1029_BICA-T1-TDNA-1_23FC2GLT4_s33_vs_1029_BICA-N1-BDNA-1_2375WFLT3_s32.segments.csv
Full Path
s3://natera-rnd-pltf-dev-nextflow-data-01/users/mipeters/semiproductionize/sarek/69814f07/std_run_largest2_smallest2_8a99ba01/variant_calling/facets/1029_BICA-T1-TDNA-1_23FC2GLT4_s33_vs_1029_BICA-N1-BDNA-1_2375WFLT3_s32/1029_BICA-T1-TDNA-1_23FC2GLT4_s33_vs_1029_BICA-N1-BDNA-1_2375WFLT3_s32.segments.csv
Size
27.9 KB
Workflow Run
mipeters-std-largest2-smallest2-69814f07
Published
Feb 02, 2026 7:07 PM

Content

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chrom seg num.mark nhet cnlr.median mafR segclust cnlr.median.clust mafR.clust start end cf.em tcn.em lcn.em
1 1 1 4159 479 0.0406373390501585 0.00124373316713642 45 0.0160265154601928 0.00163134442426669 14464 12759485 1 2 1
2 1 2 254 40 -0.230280636909166 0.00637902304380302 35 -0.214342294565745 0.000565085459774137 12759708 13420709 1 2 1
3 1 3 12846 1522 0.0168122151432646 0.00684123436090825 45 0.0160265154601928 0.00163134442426669 13420992 55178001 1 2 1
4 1 4 2903 314 -0.131921880456793 0.00297347363522932 37 -0.144123025708114 0.00177528681378034 55178137 77948343 1 2 1
5 1 5 13 1 1.21727792632624 -0.0176937050393348 60 1.2194113852594 NA 77948591 77957050 0.7150558986925 6 NA
6 1 6 3868 384 -0.122002807773323 0.0119452891686517 38 -0.0935055358607354 0.00410199533066413 77958331 108716296 1 2 1
7 1 7 4529 375 -0.0283973746120499 -0.00426566544358856 43 -0.0367998574594499 -0.00392331344737855 108717853 148952762 1 2 1
8 1 8 1436 77 0.0803567752227576 0.00195737326198098 50 0.0739035763833454 -0.00159594764461874 148953031 152037054 1 2 1
9 1 9 308 30 -0.171243087361207 0.0132315088907766 37 -0.144123025708114 0.00177528681378034 152077909 153032879 1 2 1
10 1 10 4456 535 0.0742162858275645 -0.00160866682206391 50 0.0739035763833454 -0.00159594764461874 153040210 161766543 1 2 1
11 1 11 674 101 -0.0801270295453251 -0.0154565707675292 38 -0.0935055358607354 0.00410199533066413 161778266 166989695 1 2 1
12 1 12 20 3 -1.13146801661716 -0.114948845494372 14 -1.12624458671167 NA 166991487 167054189 0.499661863592053 0 0
13 1 13 864 103 -0.0114110396195491 0.000914835395617747 47 0.0160265154601928 -0.00178909237119932 167054487 170995523 1 2 1
14 1 14 21 0 -1.26028326656096 0 12 -1.25433634267538 NA 170995805 171064538 0.564250263919322 0 0
15 1 15 3734 382 -0.0471087119361649 0.00405392941462739 42 -0.0367998574594499 0.00156330470637752 171092593 193236436 1 2 1
16 1 16 393 68 -0.497345049394131 -0.0209619273387623 22 -0.464390742784396 -0.0241338196645035 193236685 197143943 0.260157766779797 0 0
17 1 17 10463 1341 -0.0450143165750854 0.000439503502290057 42 -0.0367998574594499 0.00156330470637752 197144151 248936569 1 2 1
18 2 18 2122 291 -0.0549090656635486 -0.00403421084518213 43 -0.0367998574594499 -0.00392331344737855 41366 20260504 1 2 1
19 2 19 17 1 1.22154484419256 0.516526130772468 60 1.2194113852594 NA 20263091 20297691 0.7150558986925 6 NA
20 2 20 11865 1214 -0.026464202005955 -0.00220661695665347 42 -0.0367998574594499 0.00156330470637752 20307933 88750190 1 2 1
21 2 21 702 81 -0.266892888646556 0.0298325450741567 31 -0.269415092943937 0.00143525715451858 88770754 95957049 0.164492880804737 0 0
22 2 22 15 1 -1.17537850983915 0.0984538187495721 13 -1.21065353079833 NA 95958394 95980758 0.537883137630331 0 0
23 2 23 733 74 0.000146252129535729 -0.00623909291957203 48 0.0160265154601928 -0.00614632124029917 95982108 97217717 1 2 1
24 2 24 47 3 0.0106773310683794 -0.0256866186773975 49 0.0160265154601928 NA 97218707 97540331 NA 2 NA
25 2 25 45 18 -1.27224497524374 -0.0143717448224372 11 -1.25433634267538 -0.0143717448224372 97541821 97579249 0.544727862727152 0 0
26 2 26 2875 368 -0.0544385870887471 -0.00457892921924037 43 -0.0367998574594499 -0.00392331344737855 97580396 112832825 1 2 1
27 2 27 3417 357 -0.132812365851781 0.00512994971529702 37 -0.144123025708114 0.00177528681378034 112833253 138279205 1 2 1
28 2 28 390 64 -0.678571761225169 0.0414575852273151 20 -0.648340115629958 0.0414575852273151 138287886 142303310 0.342964942401552 0 0
29 2 29 194 12 -0.0777177579117159 0.0552848822352555 41 -0.0935055358607354 NA 142391219 147896500 NA 2 NA
30 2 30 28 5 -1.40661629809501 -0.106484261707051 9 -1.39668072492322 NA 147896725 147939241 0.59516682500766 0 0
31 2 31 2808 347 -0.148252665945565 -0.000670033138030974 37 -0.144123025708114 0.00177528681378034 147943301 167243511 1 2 1
32 2 32 12 1 -1.63806088799157 0.011519566314436 4 -1.62697826049213 NA 167243832 167247033 0.648034866492107 0 0
33 2 33 2193 250 -0.0690918808524587 -0.000129773621718847 38 -0.0935055358607354 0.00410199533066413 167247353 178495872 1 2 1
34 2 34 10 0 -1.37460354103464 0 9 -1.39668072492322 NA 178499170 178525770 0.59516682500766 0 0
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36 2 36 25 0 -1.45238613242275 0 7 -1.48057424264979 NA 178745564 178752139 0.618032809319545 0 0
37 2 37 800 77 -0.209296739699565 0.00338542190045181 35 -0.214342294565745 0.000565085459774137 178753179 185744503 1 2 1
38 2 38 105 28 -1.48362569642566 0.0490056706280143 6 -1.48057424264979 0.0490056706280143 185745306 185833248 0.612145738826852 0 0
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45 3 45 94 9 -0.0685796775309023 -0.00974882717302853 41 -0.0935055358607354 NA 51395 1327732 NA 2 NA
46 3 46 28 6 -1.30074007094824 -0.0508320792666597 10 -1.31144073285419 NA 1329880 1403521 0.570803237088255 0 0
47 3 47 1828 200 -0.0234103239725246 0.0068849705186866 42 -0.0367998574594499 0.00156330470637752 1459233 12314131 1 2 1
48 3 48 11 1 -1.55906370891818 0.00663150221437961 5 -1.54630025670047 NA 12314449 12317031 0.622094318246563 0 0
49 3 49 3223 352 -0.0739373003667662 0.00138192793125993 38 -0.0935055358607354 0.00410199533066413 12317550 35691020 1 2 1
50 3 50 380 12 -0.0526454496063448 0.0106690898384127 44 -0.0367998574594499 NA 35707004 37324306 NA 2 NA
51 3 51 18 0 -1.44520274417885 0 7 -1.48057424264979 NA 37324674 37335056 0.618032809319545 0 0
52 3 52 1948 158 -0.0428144168291853 0.00135429918891002 42 -0.0367998574594499 0.00156330470637752 37335300 44906716 1 2 1
53 3 53 4447 266 0.0500512389996214 -0.00434164789780536 48 0.0160265154601928 -0.00614632124029917 44907098 53747471 1 2 1
54 3 54 2397 243 -0.0264936492929971 0.00458595216214684 42 -0.0367998574594499 0.00156330470637752 53749242 71245571 1 2 1
55 3 55 589 53 -0.218375824714322 0.00584323952611418 35 -0.214342294565745 0.000565085459774137 71269195 77527612 1 2 1
56 3 56 18 3 0.705093487714692 -0.0609424733465803 58 0.705093487714692 NA 77546314 77574763 0.465532481526278 5 NA
57 3 57 10 0 -1.11784358961532 0 14 -1.12624458671167 NA 77577474 77595319 0.499661863592053 0 0
58 3 58 421 55 -0.1378750672865 -0.0142410711048507 37 -0.144123025708114 0.00177528681378034 77596738 88129858 1 2 1
59 3 59 14 3 -1.48429171614701 -0.0167131675463751 7 -1.48057424264979 NA 88134972 88141982 0.618032809319545 0 0
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61 3 61 13 1 -1.50855396197019 -0.0298364257585591 7 -1.48057424264979 NA 89407405 89419807 0.618032809319545 0 0
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66 3 66 1984 207 -0.117887439586589 -0.0113921582838167 38 -0.0935055358607354 0.00410199533066413 101323927 119077348 1 2 1
67 3 67 17 6 -1.11697466286142 -0.0169892500786082 14 -1.12624458671167 NA 119105128 119151441 0.499661863592053 0 0
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69 3 69 3500 482 -0.0104415219165255 0.00302917428601575 45 0.0160265154601928 0.00163134442426669 182945552 198170081 1 2 1
70 4 70 4721 604 -0.74899953649163 1.52818726465816 17 -0.748895754147311 1.52818726465816 15464 36835158 0.7150558986925 1 0
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72 4 72 454 78 0.36788723456157 0.306805411505899 53 0.36788723456157 0.306805411505899 40243449 44175451 0.7150558986925 3 1
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74 4 74 12 4 -1.34100307773281 0.318909299611716 10 -1.31144073285419 NA 49163530 49504320 0.570803237088255 0 0
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79 4 79 12 5 0.561992167501079 -0.0279331176129249 57 0.534282014230889 NA 69418771 69485319 0.407844688670321 4 NA
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230 rows