File Info
- Filename
- 1029_BBS1-T1-TDNA-1_23FC2GLT4_s23_vs_1029_BBS1-N1-BDNA-1_2375WFLT3_s23.mutect2.filtered.vcf.gz.filteringStats.tsv
- Full Path
- s3://natera-rnd-pltf-dev-nextflow-data-01/users/mipeters/semiproductionize/sarek/69814f07/std_run_largest2_smallest2_8a99ba01/variant_calling/chip_variants/1029_BBS1-N1-BDNA-1_2375WFLT3_s23/somatic_matched/1029_BBS1-T1-TDNA-1_23FC2GLT4_s23_vs_1029_BBS1-N1-BDNA-1_2375WFLT3_s23.mutect2.filtered.vcf.gz.filteringStats.tsv
- Size
- 1.9 KB
- Workflow Run
- mipeters-std-largest2-smallest2-69814f07
- Published
- Feb 02, 2026 10:28 PM
Content
View in new tab| #<METADATA>Ln | prior | of | deletion | of | length | 10=-20.72326583694641 | ||||
| #<METADATA>Ln | prior | of | deletion | of | length | 9=-20.72326583694641 | ||||
| #<METADATA>Ln | prior | of | deletion | of | length | 8=-20.72326583694641 | ||||
| #<METADATA>Ln | prior | of | deletion | of | length | 7=-20.72326583694641 | ||||
| #<METADATA>Ln | prior | of | deletion | of | length | 6=-20.72326583694641 | ||||
| #<METADATA>Ln | prior | of | deletion | of | length | 5=-17.432526903130952 | ||||
| #<METADATA>Ln | prior | of | deletion | of | length | 4=-17.43069591668651 | ||||
| #<METADATA>Ln | prior | of | deletion | of | length | 3=-20.72326583694641 | ||||
| #<METADATA>Ln | prior | of | deletion | of | length | 2=-16.739385347989934 | ||||
| #<METADATA>Ln | prior | of | deletion | of | length | 1=-14.83463387308024 | ||||
| #<METADATA>Ln | prior | of | SNV=-12.6545467552329 | |||||||
| #<METADATA>Ln | prior | of | insertion | of | length | 1=-15.775899260619926 | ||||
| #<METADATA>Ln | prior | of | insertion | of | length | 2=-20.72326583694641 | ||||
| #<METADATA>Ln | prior | of | insertion | of | length | 3=-20.72326583694641 | ||||
| #<METADATA>Ln | prior | of | insertion | of | length | 4=-20.72326583694641 | ||||
| #<METADATA>Ln | prior | of | insertion | of | length | 5=-16.671621690992364 | ||||
| #<METADATA>Ln | prior | of | insertion | of | length | 6=-17.398391073989902 | ||||
| #<METADATA>Ln | prior | of | insertion | of | length | 7=-20.72326583694641 | ||||
| #<METADATA>Ln | prior | of | insertion | of | length | 8=-17.65100611765359 | ||||
| #<METADATA>Ln | prior | of | insertion | of | length | 9=-20.72326583694641 | ||||
| #<METADATA>Ln | prior | of | insertion | of | length | 10=-20.72326583694641 | ||||
| #<METADATA>Background | beta-binomial | cluster=weight | = | 0.3115, | alpha | = | 1.02, | beta | = | 5.52 |
| #<METADATA>High-AF | beta-binomial | cluster=weight | = | 0.0055, | alpha | = | 9.99, | beta | = | 1.06 |
| #<METADATA>Binomial | cluster=weight | = | 0.4199, | mean | = | 0.010 | ||||
| #<METADATA>Binomial | cluster=weight | = | 0.2632, | mean | = | 0.024 | ||||
| #<METADATA>threshold=0.574 | ||||||||||
| #<METADATA>fdr=0.146 | ||||||||||
| #<METADATA>sensitivity=0.828 | ||||||||||
| filter | FP | FDR | FN | FNR | ||||||
| weak_evidence | 2.45 | 0.01 | 4.14 | 0.02 | ||||||
| strand_bias | 14.86 | 0.07 | 6.96 | 0.03 | ||||||
| contamination | 1.1 | 0.01 | 1.77 | 0.01 | ||||||
| normal_artifact | 6.97 | 0.03 | 4.75 | 0.02 | ||||||
| orientation | 12.13 | 0.06 | 18.94 | 0.09 | ||||||
| slippage | 0.0 | 0.0 | 0.0 | 0.0 | ||||||
| haplotype | 3.96 | 0.02 | 6.24 | 0.03 | ||||||
| germline | 0.11 | 0.0 | 0.0 | 0.0 |
37 rows