File Info
- Filename
- 1029_BICA-T1-TDNA-1_23FC2GLT4_s33_vs_1029_BICA-N1-BDNA-1_2375WFLT3_s32.mutect2.filtered.vcf.gz.filteringStats.tsv
- Full Path
- s3://natera-rnd-pltf-dev-nextflow-data-01/users/mipeters/semiproductionize/sarek/69814f07/std_run_largest2_smallest2_8a99ba01/variant_calling/chip_variants/1029_BICA-N1-BDNA-1_2375WFLT3_s32/somatic_matched/1029_BICA-T1-TDNA-1_23FC2GLT4_s33_vs_1029_BICA-N1-BDNA-1_2375WFLT3_s32.mutect2.filtered.vcf.gz.filteringStats.tsv
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- 1.9 KB
- Workflow Run
- mipeters-std-largest2-smallest2-69814f07
- Published
- Feb 02, 2026 10:37 PM
Content
View in new tab| #<METADATA>Ln | prior | of | deletion | of | length | 10=-20.72326583694641 | ||||
| #<METADATA>Ln | prior | of | deletion | of | length | 9=-20.72326583694641 | ||||
| #<METADATA>Ln | prior | of | deletion | of | length | 8=-17.433125213504002 | ||||
| #<METADATA>Ln | prior | of | deletion | of | length | 7=-20.72326583694641 | ||||
| #<METADATA>Ln | prior | of | deletion | of | length | 6=-17.433125213504002 | ||||
| #<METADATA>Ln | prior | of | deletion | of | length | 5=-20.72326583694641 | ||||
| #<METADATA>Ln | prior | of | deletion | of | length | 4=-20.72326583694641 | ||||
| #<METADATA>Ln | prior | of | deletion | of | length | 3=-17.433125213504002 | ||||
| #<METADATA>Ln | prior | of | deletion | of | length | 2=-16.739952002483456 | ||||
| #<METADATA>Ln | prior | of | deletion | of | length | 1=-15.353683582717613 | ||||
| #<METADATA>Ln | prior | of | SNV=-8.015866897510696 | |||||||
| #<METADATA>Ln | prior | of | insertion | of | length | 1=-15.43461545273919 | ||||
| #<METADATA>Ln | prior | of | insertion | of | length | 2=-17.433125213504002 | ||||
| #<METADATA>Ln | prior | of | insertion | of | length | 3=-17.433125213504002 | ||||
| #<METADATA>Ln | prior | of | insertion | of | length | 4=-20.72326583694641 | ||||
| #<METADATA>Ln | prior | of | insertion | of | length | 5=-20.72326583694641 | ||||
| #<METADATA>Ln | prior | of | insertion | of | length | 6=-20.72326583694641 | ||||
| #<METADATA>Ln | prior | of | insertion | of | length | 7=-20.72326583694641 | ||||
| #<METADATA>Ln | prior | of | insertion | of | length | 8=-20.72326583694641 | ||||
| #<METADATA>Ln | prior | of | insertion | of | length | 9=-20.72326583694641 | ||||
| #<METADATA>Ln | prior | of | insertion | of | length | 10=-20.72326583694641 | ||||
| #<METADATA>Background | beta-binomial | cluster=weight | = | 0.1566, | alpha | = | 3.04, | beta | = | 2.69 |
| #<METADATA>High-AF | beta-binomial | cluster=weight | = | 0.0001, | alpha | = | 9.95, | beta | = | 1.30 |
| #<METADATA>Binomial | cluster=weight | = | 0.5510, | mean | = | 0.330 | ||||
| #<METADATA>Binomial | cluster=weight | = | 0.2923, | mean | = | 0.358 | ||||
| #<METADATA>threshold=0.482 | ||||||||||
| #<METADATA>fdr=0.001 | ||||||||||
| #<METADATA>sensitivity=0.999 | ||||||||||
| filter | FP | FDR | FN | FNR | ||||||
| weak_evidence | 0.44 | 0.0 | 1.67 | 0.0 | ||||||
| strand_bias | 7.65 | 0.0 | 1.99 | 0.0 | ||||||
| contamination | 4.44 | 0.0 | 5.24 | 0.0 | ||||||
| normal_artifact | 0.88 | 0.0 | 2.61 | 0.0 | ||||||
| orientation | 4.12 | 0.0 | 4.44 | 0.0 | ||||||
| slippage | 0.0 | 0.0 | 0.0 | 0.0 | ||||||
| haplotype | 2.98 | 0.0 | 2.21 | 0.0 | ||||||
| germline | 0.0 | 0.0 | 0.0 | 0.0 |
37 rows