Prefix: s3://natera-rnd-pltf-dev-nextflow-data-01/users/mipeters/semiproductionize/sarek/69814f07/std_run_largest2_smallest2_8a99ba01
| Path | ||
|---|---|---|
| /multiqc/multiqc_plots | Feb 02, 2026 10:50 PM | |
| /multiqc/multiqc_data | Feb 02, 2026 10:50 PM | |
| /multiqc/multiqc_report.html | Feb 02, 2026 10:50 PM | |
| /annotation/mutect2/1029_BICA-T1-TDNA-1_23FC2GLT4_s33_vs_1029_BICA-N1-BDNA-1_2375WFLT3_s32/1029_BICA-T1-TDNA-1_23FC2GLT4_s33_vs_1029_BICA-N1-BDNA-1_2375WFLT3_s32.mutect2.whatshap.phased_custom.ann_snpEff_VEP.ann.vcf.gz.tbi | Feb 02, 2026 10:48 PM | |
| /annotation/mutect2/1029_BICA-T1-TDNA-1_23FC2GLT4_s33_vs_1029_BICA-N1-BDNA-1_2375WFLT3_s32/1029_BICA-T1-TDNA-1_23FC2GLT4_s33_vs_1029_BICA-N1-BDNA-1_2375WFLT3_s32.mutect2.whatshap.phased_custom.ann_snpEff_VEP.ann.vcf.gz | Feb 02, 2026 10:47 PM | |
| /reports/EnsemblVEP/mutect2/1029_BICA-T1-TDNA-1_23FC2GLT4_s33_vs_1029_BICA-N1-BDNA-1_2375WFLT3_s32/1029_BICA-T1-TDNA-1_23FC2GLT4_s33_vs_1029_BICA-N1-BDNA-1_2375WFLT3_s32.mutect2.whatshap.phased_custom.ann_snpEff_VEP.ann.summary.html | Feb 02, 2026 10:47 PM | |
| /annotation/mutect2/1029_BICA-T1-TDNA-1_23FC2GLT4_s33_vs_1029_BICA-N1-BDNA-1_2375WFLT3_s32/1029_BICA-T1-TDNA-1_23FC2GLT4_s33_vs_1029_BICA-N1-BDNA-1_2375WFLT3_s32.mutect2.filtered_custom.ann_snpEff_VEP.ann.vcf.gz.tbi | Feb 02, 2026 10:46 PM | |
| /reports/variant_qc.json | Feb 02, 2026 10:45 PM | |
| /annotation/mutect2/1029_BICA-T1-TDNA-1_23FC2GLT4_s33_vs_1029_BICA-N1-BDNA-1_2375WFLT3_s32/1029_BICA-T1-TDNA-1_23FC2GLT4_s33_vs_1029_BICA-N1-BDNA-1_2375WFLT3_s32.mutect2.whatshap.phased_custom.ann_snpEff.ann.vcf.gz | Feb 02, 2026 10:45 PM | |
| /annotation/mutect2/1029_BICA-T1-TDNA-1_23FC2GLT4_s33_vs_1029_BICA-N1-BDNA-1_2375WFLT3_s32/1029_BICA-T1-TDNA-1_23FC2GLT4_s33_vs_1029_BICA-N1-BDNA-1_2375WFLT3_s32.mutect2.whatshap.phased_custom.ann_snpEff.ann.vcf.gz.tbi | Feb 02, 2026 10:45 PM | |
| /annotation/mutect2/1029_BICA-T1-TDNA-1_23FC2GLT4_s33_vs_1029_BICA-N1-BDNA-1_2375WFLT3_s32/1029_BICA-T1-TDNA-1_23FC2GLT4_s33_vs_1029_BICA-N1-BDNA-1_2375WFLT3_s32.mutect2.filtered_custom.ann_snpEff_VEP.ann.vcf.gz | Feb 02, 2026 10:45 PM | |
| /reports/EnsemblVEP/mutect2/1029_BICA-T1-TDNA-1_23FC2GLT4_s33_vs_1029_BICA-N1-BDNA-1_2375WFLT3_s32/1029_BICA-T1-TDNA-1_23FC2GLT4_s33_vs_1029_BICA-N1-BDNA-1_2375WFLT3_s32.mutect2.filtered_custom.ann_snpEff_VEP.ann.summary.html | Feb 02, 2026 10:45 PM | |
| /reports/raw_qc/snpeff/mutect2/1029_BICA-T1-TDNA-1_23FC2GLT4_s33_vs_1029_BICA-N1-BDNA-1_2375WFLT3_s32/1029_BICA-T1-TDNA-1_23FC2GLT4_s33_vs_1029_BICA-N1-BDNA-1_2375WFLT3_s32.mutect2.whatshap.phased_custom.ann_snpEff.genes.txt | Feb 02, 2026 10:44 PM | |
| /reports/raw_qc/snpeff/mutect2/1029_BICA-T1-TDNA-1_23FC2GLT4_s33_vs_1029_BICA-N1-BDNA-1_2375WFLT3_s32/1029_BICA-T1-TDNA-1_23FC2GLT4_s33_vs_1029_BICA-N1-BDNA-1_2375WFLT3_s32.mutect2.whatshap.phased_custom.ann_snpEff.csv | Feb 02, 2026 10:44 PM | |
| /annotation/mutect2/1029_BICA-T1-TDNA-1_23FC2GLT4_s33_vs_1029_BICA-N1-BDNA-1_2375WFLT3_s32/1029_BICA-T1-TDNA-1_23FC2GLT4_s33_vs_1029_BICA-N1-BDNA-1_2375WFLT3_s32.mutect2.filtered_custom.ann_snpEff.ann.vcf.gz | Feb 02, 2026 10:43 PM | |
| /annotation/mutect2/1029_BICA-T1-TDNA-1_23FC2GLT4_s33_vs_1029_BICA-N1-BDNA-1_2375WFLT3_s32/1029_BICA-T1-TDNA-1_23FC2GLT4_s33_vs_1029_BICA-N1-BDNA-1_2375WFLT3_s32.mutect2.filtered_custom.ann_snpEff.ann.vcf.gz.tbi | Feb 02, 2026 10:43 PM | |
| /variant_calling/chip_variants/1029_BICA-N1-BDNA-1_2375WFLT3_s32/1029_BICA-N1-BDNA-1_2375WFLT3_s32.chip_candidates.vcf.gz | Feb 02, 2026 10:42 PM | |
| /variant_calling/chip_variants/1029_BICA-N1-BDNA-1_2375WFLT3_s32/1029_BICA-N1-BDNA-1_2375WFLT3_s32.chip_candidates.vcf.gz.tbi | Feb 02, 2026 10:42 PM | |
| /reports/raw_qc/snpeff/mutect2/1029_BICA-T1-TDNA-1_23FC2GLT4_s33_vs_1029_BICA-N1-BDNA-1_2375WFLT3_s32/1029_BICA-T1-TDNA-1_23FC2GLT4_s33_vs_1029_BICA-N1-BDNA-1_2375WFLT3_s32.mutect2.filtered_custom.ann_snpEff.genes.txt | Feb 02, 2026 10:42 PM | |
| /reports/raw_qc/snpeff/mutect2/1029_BICA-T1-TDNA-1_23FC2GLT4_s33_vs_1029_BICA-N1-BDNA-1_2375WFLT3_s32/snpEff_summary.html | Feb 02, 2026 10:42 PM |