NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:MSISENSOR2_MSI (1029_BBS1-T1-TDNA-1_23FC2GLT4_s23_vs_1029_BBS1-N1-BDNA-1_2375WFLT3_s23) - mipeters-std-largest2-smallest2-69814f07 - Workflow Tracker

Runs
mipeters-std..t2-69814f07
Tasks
MSISENSOR2_MSI (1029_BBS1-T1-TDNA-1_23FC2GLT4_s23_vs_1029_BBS1-N1-BDNA-1_2375WFLT3_s23)

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Task Info

Status: succeeded
Hash: 6266878c6b84
Process: NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:MSISENSOR2_MSI
Tag: 1029_BBS1-T1-TDNA-1_23FC2GLT4_s23_vs_1029_BBS1-N1-BDNA-1_2375WFLT3_s23
Attempts: 2

Attempt 2

Execution

Status: succeeded
Hash: 3a/b74c1b
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/msisensor2:0.1--hd03093a_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3a/b74c1b5313e5b34c7cf07aa4a55297
Native ID: nf-3ab74c1b5313e5b34c7cf07aa4a55297-067e8

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 1.5 / 64
Memory (peak / alloc): 7.6 GB / 128.0 GB
Process I/O (rchar / wchar): 94.4 GB / 2.2 MB
Disk I/O (read / write): 46.7 GB / 4.2 MB
Host: i-02ec0f7a960a45add ( on-demand)

Runtime

Submitted: Feb 02, 2026 5:43:13 PM
Completed: Feb 02, 2026 6:38:05 PM
Total Duration: 54m 51s

Phases

Queue: 9s
Execution: 46m 11s
Stage/Unstage: 8m 31s

Attempt 1

Execution

Status: failed
Hash: 9f/b3c39e
Exit Code: 143
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/msisensor2:0.1--hd03093a_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9f/b3c39eaa24340f9184c46f9c3a5c28
Native ID: nf-9fb3c39eaa24340f9184c46f9c3a5c28-2c6d2

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): - / 32
Memory (peak / alloc): - / 64.0 GB
Process I/O (rchar / wchar): - / -
Disk I/O (read / write): - / -
Host: i-0e3aac519758d87f1 ( spot)

Runtime

Submitted: Feb 02, 2026 5:35:04 PM
Completed: Feb 02, 2026 5:42:19 PM
Total Duration: 7m 14s

Phases

Queue: 1m 21s
Execution: 5m 53s
Stage/Unstage: 0s