|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_MUTECT2:GETPILEUPSUMMARIES_TUMOR (1029_BICA-T1-TDNA-1_23FC2GLT4_s33;chr4_40123127-40123212)
|
44m 13s |
1m 39s |
34m 29s |
8m 5s |
887.6 MB |
105% |
41.5 GB |
1.1 MB |
46.6 GB |
1.1 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_MUTECT2:GETPILEUPSUMMARIES_TUMOR (1029_BICA-T1-TDNA-1_23FC2GLT4_s33;chr9_114905828-114905899)
|
43m 56s |
19s |
35m 3s |
8m 34s |
742.6 MB |
105% |
41.3 GB |
1.1 MB |
44.8 GB |
1.1 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_MUTECT2:LEARNREADORIENTATIONMODEL (1029_BBCQ-T1-TDNA-1_23FC2GLT4_s21_vs_1029_BBCQ-N1-BDNA-1_2375WFLT3_s21)
|
32s |
4s |
26s |
2s |
959.1 MB |
136% |
103.2 MB |
6.8 MB |
0 bytes |
6.8 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_MUTECT2:LEARNREADORIENTATIONMODEL (1029_BBS1-T1-TDNA-1_23FC2GLT4_s23_vs_1029_BBS1-N1-BDNA-1_2375WFLT3_s23)
|
10m 21s |
3s |
10m 16s |
2s |
2.7 GB |
108% |
297.9 MB |
149.1 MB |
0 bytes |
149.1 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_MUTECT2:LEARNREADORIENTATIONMODEL (1029_BG5-T1-TDNA-1_23FC2GLT4_s29_vs_1029_BG5-N1-BDNA-1_2375WFLT3_s29)
|
14s |
2s |
10s |
2s |
824.4 MB |
182% |
98.0 MB |
2.8 MB |
0 bytes |
2.8 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_MUTECT2:LEARNREADORIENTATIONMODEL (1029_BICA-T1-TDNA-1_23FC2GLT4_s33_vs_1029_BICA-N1-BDNA-1_2375WFLT3_s32)
|
6m 47s |
2s |
6m 43s |
2s |
2.3 GB |
108% |
240.1 MB |
106.7 MB |
0 bytes |
106.8 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_MUTECT2:MERGE_MUTECT2 (1029_BBCQ-T1-TDNA-1_23FC2GLT4_s21_vs_1029_BBCQ-N1-BDNA-1_2375WFLT3_s21)
|
9s |
4s |
3s |
2s |
246.0 MB |
319% |
96.3 MB |
1.1 MB |
0 bytes |
1.1 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_MUTECT2:MERGE_MUTECT2 (1029_BBS1-T1-TDNA-1_23FC2GLT4_s23_vs_1029_BBS1-N1-BDNA-1_2375WFLT3_s23)
|
8s |
2s |
3s |
3s |
265.9 MB |
355% |
97.2 MB |
1.9 MB |
0 bytes |
1.9 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_MUTECT2:MERGE_MUTECT2 (1029_BG5-T1-TDNA-1_23FC2GLT4_s29_vs_1029_BG5-N1-BDNA-1_2375WFLT3_s29)
|
7s |
2s |
3s |
2s |
257.1 MB |
317% |
96.1 MB |
830.4 KB |
0 bytes |
836.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_MUTECT2:MERGE_MUTECT2 (1029_BICA-T1-TDNA-1_23FC2GLT4_s33_vs_1029_BICA-N1-BDNA-1_2375WFLT3_s32)
|
7s |
2s |
3s |
2s |
298.1 MB |
360% |
98.4 MB |
3.2 MB |
0 bytes |
3.2 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_MUTECT2:MERGEMUTECTSTATS (1029_BBCQ-T1-TDNA-1_23FC2GLT4_s21_vs_1029_BBCQ-N1-BDNA-1_2375WFLT3_s21)
|
8s |
4s |
2s |
2s |
248.6 MB |
257% |
95.0 MB |
691.6 KB |
0 bytes |
696.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_MUTECT2:MERGEMUTECTSTATS (1029_BBS1-T1-TDNA-1_23FC2GLT4_s23_vs_1029_BBS1-N1-BDNA-1_2375WFLT3_s23)
|
7s |
2s |
3s |
2s |
295.7 MB |
274% |
95.1 MB |
691.6 KB |
0 bytes |
696.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_MUTECT2:MERGEMUTECTSTATS (1029_BG5-T1-TDNA-1_23FC2GLT4_s29_vs_1029_BG5-N1-BDNA-1_2375WFLT3_s29)
|
7s |
3s |
3s |
1s |
244.5 MB |
251% |
95.0 MB |
691.6 KB |
0 bytes |
696.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_MUTECT2:MERGEMUTECTSTATS (1029_BICA-T1-TDNA-1_23FC2GLT4_s33_vs_1029_BICA-N1-BDNA-1_2375WFLT3_s32)
|
7s |
3s |
2s |
2s |
288.8 MB |
284% |
95.1 MB |
691.6 KB |
0 bytes |
696.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_MUTECT2:MUTECT2_PAIRED (1029_BBCQ-T1-TDNA-1_23FC2GLT4_s21_vs_1029_BBCQ-N1-BDNA-1_2375WFLT3_s21;chr15_81322899-81322948)
|
31m 35s |
1m 29s |
26m 40s |
3m 26s |
1.8 GB |
114% |
11.9 GB |
3.2 MB |
12.0 GB |
3.2 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_MUTECT2:MUTECT2_PAIRED (1029_BBCQ-T1-TDNA-1_23FC2GLT4_s21_vs_1029_BBCQ-N1-BDNA-1_2375WFLT3_s21;chr1_69091-70008)
|
30m 2s |
1m 15s |
25m 48s |
2m 59s |
2.1 GB |
113% |
12.5 GB |
3.0 MB |
12.7 GB |
3.0 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_MUTECT2:MUTECT2_PAIRED (1029_BBCQ-T1-TDNA-1_23FC2GLT4_s21_vs_1029_BBCQ-N1-BDNA-1_2375WFLT3_s21;chr22_46626800-46626961)
|
11m 0s |
1m 29s |
6m 8s |
3m 23s |
1.3 GB |
122% |
2.5 GB |
1.5 MB |
800.0 MB |
1.6 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_MUTECT2:MUTECT2_PAIRED (1029_BBCQ-T1-TDNA-1_23FC2GLT4_s21_vs_1029_BBCQ-N1-BDNA-1_2375WFLT3_s21;chr4_40123127-40123212)
|
33m 50s |
3m 34s |
28m 31s |
1m 45s |
2.5 GB |
114% |
13.0 GB |
2.9 MB |
12.3 GB |
3.0 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_MUTECT2:MUTECT2_PAIRED (1029_BBCQ-T1-TDNA-1_23FC2GLT4_s21_vs_1029_BBCQ-N1-BDNA-1_2375WFLT3_s21;chr9_114905828-114905899)
|
31m 3s |
2m 21s |
26m 24s |
2m 18s |
1.7 GB |
116% |
11.7 GB |
2.9 MB |
11.8 GB |
3.0 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_MUTECT2:MUTECT2_PAIRED (1029_BBS1-T1-TDNA-1_23FC2GLT4_s23_vs_1029_BBS1-N1-BDNA-1_2375WFLT3_s23;chr15_81322899-81322948)
|
4h 40m |
46s |
4h 31m |
8m 19s |
3.0 GB |
113% |
55.6 GB |
60.8 MB |
57.0 GB |
60.7 MB |
1 |