NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:MSISENSOR2_MSI (1029_BICA-T1-TDNA-1_23FC2GLT4_s33_vs_1029_BICA-N1-BDNA-1_2375WFLT3_s32) - mipeters-std-largest2-smallest2-69814f07 - Workflow Tracker

Runs
mipeters-std..t2-69814f07
Tasks
MSISENSOR2_MSI (1029_BICA-T1-TDNA-1_23FC2GLT4_s33_vs_1029_BICA-N1-BDNA-1_2375WFLT3_s32)

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Task Info

Status: succeeded
Hash: c8a80e93f398
Process: NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:MSISENSOR2_MSI
Tag: 1029_BICA-T1-TDNA-1_23FC2GLT4_s33_vs_1029_BICA-N1-BDNA-1_2375WFLT3_s32
Attempts: 2

Attempt 2

Execution

Status: succeeded
Hash: f3/017064
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/msisensor2:0.1--hd03093a_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f3/017064405f389e34e2b76b8be7b0b7
Native ID: nf-f3017064405f389e34e2b76b8be7b0b7-228b7

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 1.4 / 64
Memory (peak / alloc): 7.9 GB / 128.0 GB
Process I/O (rchar / wchar): 99.8 GB / 2.2 MB
Disk I/O (read / write): 49.3 GB / 4.2 MB
Host: i-042f940581ff349aa ( on-demand)

Runtime

Submitted: Feb 02, 2026 5:41:10 PM
Completed: Feb 02, 2026 6:38:02 PM
Total Duration: 56m 51s

Phases

Queue: 1m 18s
Execution: 47m 25s
Stage/Unstage: 8m 8s

Attempt 1

Execution

Status: failed
Hash: 0c/7696a1
Exit Code: 143
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/msisensor2:0.1--hd03093a_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0c/7696a17227e6b6541845a5223839f3
Native ID: nf-0c7696a17227e6b6541845a5223839f3-f8c8e

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): - / 32
Memory (peak / alloc): - / 64.0 GB
Process I/O (rchar / wchar): - / -
Disk I/O (read / write): - / -
Host: i-0b13c3f41da4440f0 ( spot)

Runtime

Submitted: Feb 02, 2026 5:35:04 PM
Completed: Feb 02, 2026 5:40:51 PM
Total Duration: 5m 46s

Phases

Queue: 40s
Execution: 5m 6s
Stage/Unstage: 0s