Error executing process > 'VALIDATE_DATA:VALIDATE_FILE (HCC1395N)'

Caused by:
  Process `VALIDATE_DATA:VALIDATE_FILE (HCC1395N)` terminated with an error exit status (143)


Command executed:

  echo "=== Validating HCC1395N ==="
  
  validation_passed="false"
  all_valid=true
  
  for fastq in SRR7890919_WES_HCC1395BL-EA_normal_1.fastq.gz SRR7890919_WES_HCC1395BL-EA_normal_2.fastq.gz; do
      if [[ ! -f "${fastq}" ]]; then
          echo "ERROR: File not found: ${fastq}"
          all_valid=false
      elif [[ ! -s "${fastq}" ]]; then
          echo "ERROR: File is empty: ${fastq}"
          all_valid=false
      else
          echo "PASS: ${fastq}"
      fi
  done
  
  if ${all_valid}; then
      validation_passed="true"
  fi
  
  echo "Validation: ${validation_passed}"
  echo "${validation_passed}" > validation_status.txt

Command exit status:
  143

Command output:
  (empty)

Work dir:
  s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/69/e5ac643d007902b9047aa461ac1fbb

Container:
  quay.io/biocontainers/arriba:2.4.0--h0033a41_2

Tip: you can replicate the issue by changing to the process work dir and entering the command `bash .command.run`