Loading wildtype catalog...
  63 wildtype units loaded (0 skipped: [])

Sample: 3599981341_r4
BAM: /tmp/miniwdl_task/work/_miniwdl_inputs/0/3599981341_r4.bam

  Units: 4639 | Length-change anomalies: 30 | K-mer frac: 0.0070 | Call: POSITIVE
  (K-mer rescued: kmer_frac=0.0070 >= 0.004)

  Length-variant units:
  Len Count    Frac  ED Match    Description
  ---------------------------------------------------------------------------
   61    11  0.0024   1 X        +1bp ins at pos 21 (G), clinical: 59dupC
   59     2  0.0004  19 D        -1bp deletion (complex alignment)
   59     2  0.0004  18 bJ       -1bp deletion (complex alignment)
   58     2  0.0004  22 aP       -2bp deletion (complex alignment)
   59     1  0.0002  18 P        -1bp deletion (complex alignment)
   59     1  0.0002  19 D        -1bp deletion (complex alignment)
   59     1  0.0002  18 D        -1bp deletion (complex alignment)
   62     1  0.0002  24 D        +2bp insertion (complex alignment)
   42     1  0.0002  19 W        -18bp del at pos 35-52 (GCCCGGGGCCGGCCTGGT), 
   62     1  0.0002  24 D        +2bp insertion (complex alignment)
   42     1  0.0002  18 B        -18bp del at pos 37-54 (CCGGGGCCGGCCTGCTCT), 
   18     1  0.0002  45 aN       -42bp deletion (complex alignment)
   59     1  0.0002   2 M        -1bp deletion (complex alignment)
   59     1  0.0002  21 D        -1bp deletion (complex alignment)
   61     1  0.0002  19 aE       +1bp insertion (complex alignment)

Final call: POSITIVE
[]
  K-mer evidence: kmer_frac=0.0070