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Filename
1029_0W2_segments.tsv
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s3://ai-pipelines-experiment/chnobles/nf-runs/probe-agg-test/somatic/segments/1029_0W2_segments.tsv
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46.2 KB
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nf-probe-agg-test
Published
Jun 03, 2026 7:11 AM

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seg_id specimen_id chrom start end tumor_sample_id normal_sample_id n_probes n_het_sites cnlr_median cnlr_wmean mean_mbaf median_het_depth mean_valor mafR tcn lcn call clone_subset clone_purity purity clonal_frac n_clones dipLogR z_score residual_lr residual_lor sample_type
1 1029_0W2 chr1 69641 3625930 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 1255 328 -0.1553 -0.1661 0.6915 407.0 0.8078 0.7052 2 0 cn-loh 1;2;3;4;5 0.3638 0.3898 0.9334 6 -0.196 34.19 -0.1553 0.0051 somatic
2 1029_0W2 chr1 3627470 11130713 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 1592 359 -0.0061 0.0023 0.6898 338.0 0.7769 0.6383 2 0 cn-loh 1;2;3;4;5 0.3638 0.3898 0.9334 6 -0.196 31.76 -0.0061 -0.0067 somatic
3 1029_0W2 chr1 11130596 11785345 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 427 80 -0.1583 -0.1009 0.6894 1146.2 0.7924 0.6342 2 0 cn-loh 1;2;3;4;5 0.3638 0.3898 0.9334 6 -0.196 17.69 -0.1583 0.0112 somatic
4 1029_0W2 chr1 11787328 15847809 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 877 192 0.0966 0.1229 0.6851 441.0 0.7766 0.6335 3 0 amp 1;2;3;5 0.2552 0.3898 0.6547 6 -0.196 23.98 -0.0766 0.0324 somatic
5 1029_0W2 chr1 15847809 15929607 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 132 6 -0.5682 -0.4536 0.6705 3242.0 0.7225 0.533 1 0 del 1;2;3;4;5;6 0.3898 0.3898 1.0 6 -0.196 17.96 -0.2555 0.2025 somatic
6 1029_0W2 chr1 15929547 15939647 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 199 2 -0.9719 -0.8995 0.6991 6558.5 0.8566 0.8187 0 0 del 1;2;3;4;5;6 0.3898 0.3898 1.0 6 -0.196 36.87 -0.2593 0.0 somatic
7 1029_0W2 chr1 15939647 18703195 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 723 269 -0.0419 -0.0315 0.6625 484.0 0.551 0.4343 2 0 cn-loh 1;3;4;5 0.3086 0.3898 0.7919 6 -0.196 23.41 -0.0419 0.0001 somatic
8 1029_0W2 chr1 18703097 47801649 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 8182 1156 0.0153 0.0133 0.69 409.0 0.7762 0.641 2 0 cn-loh 1;2;3;4;5 0.3638 0.3898 0.9334 6 -0.196 57.47 0.0153 -0.0018 somatic
9 1029_0W2 chr1 47994031 66363593 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 2525 148 -0.0199 0.0094 0.6869 186.0 0.7147 0.5718 2 0 cn-loh 1;2;3;4;6 0.3524 0.3898 0.9041 6 -0.196 19.8 -0.0199 -0.0092 somatic
10 1029_0W2 chr1 66365626 109922008 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 4632 743 -0.0646 -0.0695 0.6828 230.0 0.7532 0.6114 2 0 cn-loh 1;2;4;5;6 0.341 0.3898 0.8748 6 -0.196 44.75 -0.0646 0.0037 somatic
11 1029_0W2 chr1 109921921 119912867 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 2002 269 -0.3046 -0.2921 0.6154 333.0 0.4882 0.2551 1 0 del 1;2;3;4;6 0.3524 0.3898 0.9041 6 -0.196 39.79 -0.025 -0.0081 somatic
12 1029_0W2 chr1 119912867 119916741 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 66 4 -1.153 -1.0567 0.6092 7217.5 0.4653 0.2047 0 0 del 1;2;3;4;5;6 0.3898 0.3898 1.0 6 -0.196 25.26 -0.4404 0.4346 somatic
13 1029_0W2 chr1 119917627 120005600 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 259 17 -0.5419 -0.497 0.6135 3076.0 0.4627 0.2224 1 0 del 1;2;3;4;5;6 0.3898 0.3898 1.0 6 -0.196 23.81 -0.2292 -0.0462 somatic
14 1029_0W2 chr1 120005512 185174818 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 9787 1555 0.5006 0.4921 0.6358 494.0 0.5576 0.3367 5 1 amp 1;2;3;5 0.2552 0.3898 0.6547 6 -0.196 140.75 0.0331 -0.0471 somatic
15 1029_0W2 chr1 185174784 248918363 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 9820 1754 0.2489 0.2489 0.5881 403.0 0.3442 0.1384 4 1 amp 1;3;6 0.1886 0.3898 0.4839 6 -0.196 72.54 -0.0004 -0.0037 somatic
16 1029_0W2 chr10 47057 14843601 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 1302 322 0.4018 0.3975 0.5862 396.8 0.3579 0.1382 6 2 amp 1;2 0.169 0.3898 0.4336 6 -0.196 40.87 -0.0183 0.0542 somatic
17 1029_0W2 chr10 14848574 133626762 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 15470 2828 0.2626 0.2719 0.579 372.8 0.3337 0.127 5 1 amp 2;5;6 0.1185 0.3898 0.304 6 -0.196 93.72 0.0266 -0.0268 somatic
18 1029_0W2 chr11 193064 2929364 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 1480 429 -0.1734 -0.1561 0.5629 456.0 0.1698 0.0332 1 0 del 1;2;5 0.2064 0.3898 0.5295 6 -0.196 20.49 -0.0163 -0.0156 somatic
19 1029_0W2 chr11 2949152 55993929 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 6580 1127 0.0453 0.0458 0.5439 408.2 0.2095 0.0529 4 0 amp 5 0.0374 0.3898 0.0959 6 -0.196 14.18 -0.0076 -0.0078 somatic
20 1029_0W2 chr11 55993984 99916182 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 8960 1414 0.2415 0.2454 0.5808 423.5 0.3267 0.1281 3 1 amp 1;2;3;4;6 0.3524 0.3898 0.9041 6 -0.196 65.97 0.0074 -0.0146 somatic
21 1029_0W2 chr11 99956748 116762887 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 2551 342 0.1133 0.1565 0.5819 291.0 0.3456 0.1329 4 0 amp 3;6 0.0748 0.3898 0.1918 6 -0.196 19.29 0.0093 0.0038 somatic
22 1029_0W2 chr11 116762969 134387716 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 3572 688 0.2893 0.3095 0.5833 443.0 0.3398 0.1352 4 1 amp 1;3;5 0.2 0.3898 0.5132 6 -0.196 49.63 0.0262 -0.0381 somatic
23 1029_0W2 chr12 66830 908783 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 387 78 0.5413 0.5221 0.7758 499.0 1.2597 1.608 5 0 amp 1;2;4;5 0.315 0.3898 0.8082 6 -0.196 37.11 -0.017 0.0119 somatic
24 1029_0W2 chr12 912054 913374 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 9 4 0.2948 0.5206 0.7895 6876.0 1.3932 1.9426 4 0 amp 1;2;3;4;5 0.3638 0.3898 0.9334 6 -0.196 6.29 -0.1528 0.1222 somatic
25 1029_0W2 chr12 913339 10997275 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 2578 547 0.4556 0.4569 0.767 439.0 1.1653 1.4028 4 0 amp 1;2;3;4;6 0.3524 0.3898 0.9041 6 -0.196 86.3 0.0201 -0.0025 somatic
26 1029_0W2 chr12 10997272 11885685 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 975 174 0.3383 0.3841 0.7541 6682.5 1.1624 1.3612 4 0 amp 1;2;3;4 0.3264 0.3898 0.8375 6 -0.196 43.16 -0.0692 0.0329 somatic
27 1029_0W2 chr12 11885685 21491768 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 1247 152 0.4656 0.4575 0.7731 346.5 1.2292 1.5552 4 0 amp 1;2;3;4;5 0.3638 0.3898 0.9334 6 -0.196 54.78 0.018 -0.007 somatic
28 1029_0W2 chr12 21494452 21766246 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 76 33 0.5513 0.6123 0.8211 447.0 1.5046 2.3055 5 0 amp 1;2;3;4;5;6 0.3898 0.3898 1.0 6 -0.196 22.92 -0.1129 0.0525 somatic
29 1029_0W2 chr12 21766263 31792102 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 1261 244 0.6681 0.6917 0.8067 263.0 1.431 2.0932 5 0 amp 1;2;3;4;5;6 0.3898 0.3898 1.0 6 -0.196 79.71 0.0039 -0.054 somatic
30 1029_0W2 chr12 31792061 31792342 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 3 2 0.4775 0.602 0.7989 19748.0 1.4643 2.1428 6 0 amp 1;2;6 0.195 0.3898 0.5002 6 -0.196 2.22 0.0025 0.0 somatic
31 1029_0W2 chr12 31980897 31987370 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 18 1 0.5768 0.5953 0.8391 174.0 1.6254 5 0 amp 1;2;3;4 0.3264 0.3898 0.8375 6 -0.196 6.58 0.0018 0.0 somatic
32 1029_0W2 chr12 32107273 38324015 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 202 34 1.1064 1.1132 0.6453 355.0 0.6089 0.3969 8 2 high-amp 1;2;3;4;5;6 0.3898 0.3898 1.0 6 -0.196 42.89 -0.0108 -0.1962 somatic
33 1029_0W2 chr12 38653868 39443025 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 126 5 0.3454 0.3408 0.5372 152.0 0.2265 0.0277 5 2 amp 4;5;6 0.172 0.3898 0.4412 6 -0.196 10.43 0.0143 -0.0526 somatic
34 1029_0W2 chr12 39553854 45893834 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 987 161 -0.156 -0.1236 0.6802 153.0 0.6801 0.5436 2 0 cn-loh 1;3;4;5;6 0.3346 0.3898 0.8585 6 -0.196 23.47 -0.156 -0.0058 somatic
35 1029_0W2 chr12 45893834 49024183 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 869 86 0.0556 0.0656 0.6948 357.0 0.8407 0.7389 2 0 cn-loh 1;2;3;4;5 0.3638 0.3898 0.9334 6 -0.196 16.64 0.0556 0.0179 somatic
36 1029_0W2 chr12 49024523 49039645 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 271 0 -0.8186 -0.6691 0 0 del 1;2;3;4;5;6 0.3898 0.3898 1.0 6 -0.196 36.24 -0.106 0.0 somatic
37 1029_0W2 chr12 49039529 49055079 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 304 15 -0.7231 -0.6981 0.6872 7288.0 0.7867 0.6435 0 0 del 1;2;3;4;5;6 0.3898 0.3898 1.0 6 -0.196 34.55 -0.0105 0.7777 somatic
38 1029_0W2 chr12 49055218 71584079 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 6046 868 0.0392 0.0407 0.6915 423.8 0.8085 0.6975 2 0 cn-loh 1;2;3;4;5 0.3638 0.3898 0.9334 6 -0.196 50.86 0.0392 0.0059 somatic
39 1029_0W2 chr12 71584079 106063910 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 3643 442 -0.0519 -0.0175 0.6966 184.0 0.8076 0.7042 2 0 cn-loh 1;2;3;4;5 0.3638 0.3898 0.9334 6 -0.196 36.98 -0.0519 0.0098 somatic
40 1029_0W2 chr12 106064030 106239143 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 64 8 -0.1716 0.0033 0.6988 6459.0 0.795 0.6398 2 0 cn-loh 1;2;3;4;5;6 0.3898 0.3898 1.0 6 -0.196 6.39 -0.1716 0.0086 somatic
41 1029_0W2 chr12 106239117 113056957 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 1811 237 0.1212 0.1265 0.7004 375.0 0.8281 0.7193 3 0 amp 1;4;5;6 0.2858 0.3898 0.7333 6 -0.196 30.87 -0.0715 0.0192 somatic
42 1029_0W2 chr12 113057410 113059096 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 34 9 -0.9219 -0.8354 0.6854 9229.0 0.7538 0.5889 0 0 del 1;2;3;4;5;6 0.3898 0.3898 1.0 6 -0.196 15.34 -0.2093 0.7704 somatic
43 1029_0W2 chr12 113059036 113097912 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 79 1 -0.5013 -0.4455 0.6929 11307.0 0.8148 0 0 del 1;3;4;6 0.2973 0.3898 0.7627 6 -0.196 11.98 0.0076 0.0 somatic
44 1029_0W2 chr12 113097912 114403934 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 266 17 0.1158 0.1318 0.7002 192.5 0.8044 0.6462 3 0 amp 1;2;4 0.2776 0.3898 0.7123 6 -0.196 8.84 -0.0717 0.0238 somatic
45 1029_0W2 chr12 114670199 114684213 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 65 2 -0.7649 -0.7349 0.5075 2079.0 0.0555 0.0 0 0 del 1;2;3;4;5;6 0.3898 0.3898 1.0 6 -0.196 16.58 -0.0523 0.0 somatic
46 1029_0W2 chr12 115961269 120737063 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 861 119 0.1366 0.1295 0.6924 315.5 0.8482 0.7633 3 0 amp 1;3;4 0.2713 0.3898 0.696 6 -0.196 21.45 -0.0469 0.0165 somatic
47 1029_0W2 chr12 120737023 121001722 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 85 27 -0.1793 -0.1643 0.6878 2361.0 0.8763 0.7685 2 0 cn-loh 1;2;3;4;5 0.3638 0.3898 0.9334 6 -0.196 9.96 -0.1793 0.0109 somatic
48 1029_0W2 chr12 121001722 121805234 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 235 59 0.1239 0.1001 0.6873 293.0 0.766 0.6373 3 0 amp 1;4;5 0.2599 0.3898 0.6667 6 -0.196 13.61 -0.0523 0.0215 somatic
49 1029_0W2 chr12 121805782 122061828 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 310 32 -0.3015 -0.2926 0.7105 2049.0 0.858 0.7436 2 0 cn-loh 1;2;3;4;5;6 0.3898 0.3898 1.0 6 -0.196 18.05 -0.3015 0.0572 somatic
50 1029_0W2 chr12 122061828 125654710 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 1200 228 0.1188 0.1204 0.694 323.0 0.8372 0.7381 3 0 amp 1;3;4 0.2713 0.3898 0.696 6 -0.196 28.2 -0.0647 0.0246 somatic
51 1029_0W2 chr12 125654649 133234376 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 1010 247 0.2935 0.2973 0.5919 622.5 0.3562 0.1446 4 1 amp 2;3;4 0.2126 0.3898 0.5454 6 -0.196 27.74 0.0154 -0.0144 somatic
52 1029_0W2 chr13 19173833 24789809 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 824 145 0.2319 0.2596 0.5815 275.0 0.3302 0.118 5 1 amp 3;5;6 0.1121 0.3898 0.2877 6 -0.196 19.41 0.0076 -0.0091 somatic
53 1029_0W2 chr13 24792990 114326203 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 7372 1058 -0.0476 -0.0345 0.5341 250.5 0.1696 0.0339 1 0 del 3;6 0.0748 0.3898 0.1918 6 -0.196 12.63 0.0074 0.0085 somatic
54 1029_0W2 chr14 18601119 20782034 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 367 128 0.0673 0.0501 0.6738 524.0 0.726 0.5892 2 0 cn-loh 1;3;4;5;6 0.3346 0.3898 0.8585 6 -0.196 17.67 0.0673 -0.0055 somatic
55 1029_0W2 chr14 20782032 35180813 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 2334 377 0.0229 0.0329 0.6893 323.8 0.7857 0.6512 2 0 cn-loh 1;2;3;4;5 0.3638 0.3898 0.9334 6 -0.196 32.54 0.0229 -0.01 somatic
56 1029_0W2 chr14 35266702 36516971 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 233 35 0.9206 0.9581 0.6596 454.0 0.535 0.3278 7 2 high-amp 1;2;3;4;5;6 0.3898 0.3898 1.0 6 -0.196 38.66 -0.0608 0.0136 somatic
57 1029_0W2 chr14 36516971 36520993 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 29 4 0.8355 0.8137 0.6759 15519.0 0.7755 0.6029 7 2 high-amp 1;2;4;5;6 0.341 0.3898 0.8748 6 -0.196 12.52 -0.0539 0.1617 somatic
58 1029_0W2 chr14 36580888 64122463 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 2735 407 -0.0344 -0.0235 0.6831 180.0 0.7875 0.6637 2 0 cn-loh 1;2;4;5;6 0.341 0.3898 0.8748 6 -0.196 32.07 -0.0344 -0.0018 somatic
59 1029_0W2 chr14 64125052 102777562 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 5506 936 0.0357 0.0386 0.687 287.5 0.78 0.64 2 0 cn-loh 1;2;3;4;6 0.3524 0.3898 0.9041 6 -0.196 50.64 0.0357 0.0027 somatic
60 1029_0W2 chr14 102777562 102906977 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 88 8 -0.2051 -0.1641 0.6733 1586.0 0.6954 0.4868 1 0 del 1;2;3;4;5;6 0.3898 0.3898 1.0 6 -0.196 6.8 0.1076 0.2092 somatic
61 1029_0W2 chr14 102906977 102911057 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 34 7 -0.4317 -0.411 0.6775 9779.0 0.7919 0.6641 1 0 del 1;2;3;4;5;6 0.3898 0.3898 1.0 6 -0.196 8.02 -0.119 0.2403 somatic
62 1029_0W2 chr14 102911057 103687209 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 247 31 0.0695 0.062 0.68 223.5 0.8827 0.8566 2 0 cn-loh 1;3;4;5;6 0.3346 0.3898 0.8585 6 -0.196 9.13 0.0695 0.0044 somatic
63 1029_0W2 chr14 103697593 103712145 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 43 16 -0.3616 -0.3336 0.6617 5619.5 0.7336 0.5427 1 0 del 1;2;3;4;5;6 0.3898 0.3898 1.0 6 -0.196 8.66 -0.0489 0.1663 somatic
64 1029_0W2 chr14 103712862 104173789 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 150 23 0.0071 0.0024 0.6892 208.5 0.7648 0.6236 2 0 cn-loh 1;2;3;4;6 0.3524 0.3898 0.9041 6 -0.196 7.89 0.0071 0.0048 somatic
65 1029_0W2 chr14 104173805 105602953 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 574 163 -0.2486 -0.2738 0.6841 442.0 0.5393 0.4475 1 0 del 1;2;3;4;5;6 0.3898 0.3898 1.0 6 -0.196 26.25 0.0641 0.2408 somatic
66 1029_0W2 chr14 105602893 105771457 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 187 71 -0.7676 -0.7613 0.6872 5706.9 0.7422 0.5861 0 0 del 1;2;3;4;5;6 0.3898 0.3898 1.0 6 -0.196 31.74 -0.055 0.7765 somatic
67 1029_0W2 chr14 105772385 105774673 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 38 22 -0.9542 -0.9826 0.709 6762.0 0.894 0.8058 0 0 del 1;2;3;4;5;6 0.3898 0.3898 1.0 6 -0.196 18.28 -0.2416 0.8808 somatic
68 1029_0W2 chr14 105774613 105865640 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 148 14 -0.5969 -0.5581 0.7157 4423.4 0.6772 0.4583 1 0 del 1;2;3;4;5;6 0.3898 0.3898 1.0 6 -0.196 20.94 -0.2842 0.4173 somatic
69 1029_0W2 chr14 105885955 106874851 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 232 107 -0.0476 0.0117 0.6933 2332.5 0.6873 0.5614 2 0 cn-loh 1;2;3;4;5;6 0.3898 0.3898 1.0 6 -0.196 18.43 -0.0476 -0.024 somatic
70 1029_0W2 chr15 20535569 41480341 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 2887 495 0.061 0.0624 0.6843 386.0 0.7692 0.6255 2 0 cn-loh 1;2;3;4;6 0.3524 0.3898 0.9041 6 -0.196 37.22 0.061 -0.0034 somatic
71 1029_0W2 chr15 41480522 41662525 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 115 18 -0.0186 0.0009 0.7011 348.5 0.7411 0.5563 2 0 cn-loh 1;2;3;4;5;6 0.3898 0.3898 1.0 6 -0.196 7.64 -0.0186 -0.0132 somatic
72 1029_0W2 chr15 41668793 41770083 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 261 12 -0.5225 -0.4991 0.6785 1252.0 0.7386 0.5598 1 0 del 1;2;3;4;5;6 0.3898 0.3898 1.0 6 -0.196 23.37 -0.2098 0.2304 somatic
73 1029_0W2 chr15 41770443 51208177 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 2773 476 -0.0085 -0.0157 0.691 292.0 0.7635 0.6179 2 0 cn-loh 1;2;3;4;5 0.3638 0.3898 0.9334 6 -0.196 36.7 -0.0085 -0.0044 somatic
74 1029_0W2 chr15 51208177 51397598 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 76 24 -0.0831 -0.154 0.6791 1409.0 0.7961 0.6561 2 0 cn-loh 1;2;3;4;6 0.3524 0.3898 0.9041 6 -0.196 8.15 -0.0831 -0.008 somatic
75 1029_0W2 chr15 51400188 80552765 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 5227 604 -0.0306 -0.0276 0.6882 247.0 0.7779 0.6518 2 0 cn-loh 1;2;3;4;6 0.3524 0.3898 0.9041 6 -0.196 40.82 -0.0306 0.0046 somatic
76 1029_0W2 chr15 80555043 86080051 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 860 112 0.2536 0.2412 0.7176 317.0 0.9159 0.9002 3 0 amp 1;2;3;4 0.3264 0.3898 0.8375 6 -0.196 28.88 0.0355 -0.0099 somatic
77 1029_0W2 chr15 86141976 87957250 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 350 79 0.0494 0.1416 0.7246 4198.0 0.9878 0.9907 2 0 cn-loh 1;2;3;4;5;6 0.3898 0.3898 1.0 6 -0.196 18.99 0.0494 0.132 somatic
78 1029_0W2 chr15 87957250 88032370 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 589 42 0.076 0.1458 0.714 5101.5 0.9122 0.909 2 0 cn-loh 1;2;3;4;5;6 0.3898 0.3898 1.0 6 -0.196 13.9 0.076 0.0807 somatic
79 1029_0W2 chr15 88032370 88083250 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 386 60 0.0733 0.1453 0.7332 7426.0 0.9835 0.9734 3 0 amp 1;2;4;5;6 0.341 0.3898 0.8748 6 -0.196 17.64 -0.1538 0.0647 somatic
80 1029_0W2 chr15 88083490 88131250 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 362 16 0.0045 0.0568 0.7208 9946.0 0.9471 0.8998 2 0 cn-loh 1;2;3;4;5;6 0.3898 0.3898 1.0 6 -0.196 8.34 0.0045 0.1174 somatic
81 1029_0W2 chr15 88131250 88146484 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 114 16 -0.0538 -0.0388 0.7198 8140.5 0.9629 0.9339 2 0 cn-loh 1;2;3;4;5;6 0.3898 0.3898 1.0 6 -0.196 8.43 -0.0538 0.1116 somatic
82 1029_0W2 chr15 88146484 92953583 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 1240 294 0.2831 0.2869 0.7284 438.0 0.9902 1.0204 3 0 amp 1;2;3;4;6 0.3524 0.3898 0.9041 6 -0.196 44.93 0.049 -0.0195 somatic
83 1029_0W2 chr15 92953475 98962296 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 408 90 0.1842 0.1958 0.7424 777.0 1.0333 1.0945 3 0 amp 1;2;3;4;5 0.3638 0.3898 0.9334 6 -0.196 23.86 -0.0569 0.0309 somatic
84 1029_0W2 chr15 98962296 101819015 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 429 114 0.2899 0.3183 0.7409 363.0 1.0489 1.1397 3 0 amp 1;2;3;4;5 0.3638 0.3898 0.9334 6 -0.196 28.83 0.0488 0.0098 somatic
85 1029_0W2 chr16 47432 3850985 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 3118 662 0.0714 0.0531 0.5896 497.5 0.3393 0.1281 3 0 amp 1 0.1139 0.3898 0.2921 6 -0.196 21.49 -0.0085 0.0005 somatic
86 1029_0W2 chr16 3850881 11254625 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 1146 291 0.2354 0.1948 0.5834 370.5 0.3669 0.144 3 1 amp 1;2;3;4;6 0.3524 0.3898 0.9041 6 -0.196 24.16 0.0013 -0.0066 somatic
87 1029_0W2 chr16 11254618 11257114 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 33 2 -0.4467 -0.3912 0.5336 1874.0 0.4473 0 0 del 1;3;4 0.2713 0.3898 0.696 6 -0.196 6.9 0.0099 0.0 somatic
88 1029_0W2 chr16 11257836 66768236 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 7181 1160 0.2837 0.2853 0.5757 421.0 0.3448 0.134 7 2 high-amp 2;5 0.0925 0.3898 0.2373 6 -0.196 67.7 -0.0164 0.0399 somatic
89 1029_0W2 chr16 66769971 81130583 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 3342 519 0.0313 0.0379 0.6825 394.0 0.7375 0.5835 2 0 cn-loh 1;2;3;4;6 0.3524 0.3898 0.9041 6 -0.196 36.95 0.0313 -0.0113 somatic
90 1029_0W2 chr16 81130571 85911633 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 865 375 0.0385 0.0133 0.6817 497.5 0.7806 0.6335 2 0 cn-loh 1;2;3;4;6 0.3524 0.3898 0.9041 6 -0.196 31.32 0.0385 -0.0105 somatic
91 1029_0W2 chr16 85911527 90075935 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 1388 240 -0.0951 -0.1117 0.6853 475.2 0.8055 0.6807 2 0 cn-loh 1;2;3;4;6 0.3524 0.3898 0.9041 6 -0.196 27.2 -0.0951 0.0053 somatic
92 1029_0W2 chr17 137555 27303636 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 6927 1367 0.0145 0.0259 0.6832 460.0 0.7457 0.6062 2 0 cn-loh 1;2;3;4;6 0.3524 0.3898 0.9041 6 -0.196 60.05 0.0145 -0.005 somatic
93 1029_0W2 chr17 27304751 76167829 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 14743 2299 0.2492 0.2485 0.5879 483.0 0.3528 0.141 4 1 amp 1;3;6 0.1886 0.3898 0.4839 6 -0.196 88.15 -0.0001 -0.0011 somatic
94 1029_0W2 chr17 76173680 83094575 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 2450 742 0.6091 0.6055 0.6596 648.0 0.7325 0.5659 6 1 amp 1;2;3;6 0.2438 0.3898 0.6254 6 -0.196 89.56 0.0362 -0.0504 somatic
95 1029_0W2 chr18 47389 62716587 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 5754 874 0.0063 0.007 0.5387 240.0 0.1943 0.0501 2 0 cn-loh 3 0.0488 0.3898 0.1252 6 -0.196 6.91 0.0063 0.006 somatic
96 1029_0W2 chr18 62716677 63320521 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 237 20 -0.5159 -0.5658 0.6142 2957.0 0.4567 0.2147 1 0 del 1;2;3;4;5;6 0.3898 0.3898 1.0 6 -0.196 21.82 -0.2032 -0.0436 somatic
97 1029_0W2 chr18 63320461 80247372 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 1010 179 -0.2683 -0.287 0.6145 219.3 0.4692 0.2498 1 0 del 1;2;4;5;6 0.341 0.3898 0.8748 6 -0.196 25.99 0.0014 -0.0046 somatic
98 1029_0W2 chr19 110681 3123934 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 1873 482 0.083 0.0624 0.5779 406.2 0.3443 0.1306 3 0 amp 2;5 0.0925 0.3898 0.2373 6 -0.196 16.49 0.0178 0.0077 somatic
99 1029_0W2 chr19 3123934 10974408 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 4538 1001 0.1687 0.1812 0.588 551.0 0.3336 0.1236 6 0 amp 5;6 0.0633 0.3898 0.1625 6 -0.196 37.99 -0.0034 -0.0188 somatic
100 1029_0W2 chr19 10984077 11062486 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 241 11 -0.1796 -0.1687 0.5867 2700.5 0.3073 0.0939 1 0 del 1;3;4 0.2713 0.3898 0.696 6 -0.196 7.89 0.0307 0.0185 somatic
101 1029_0W2 chr19 11065108 58571441 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 16369 3398 0.2044 0.1875 0.5859 445.0 0.3544 0.1418 4 1 amp 2;3;5;6 0.1673 0.3898 0.4291 6 -0.196 80.89 -0.0187 0.0206 somatic
102 1029_0W2 chr2 41522 25767775 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 2623 436 0.0453 0.0652 0.5418 364.0 0.1944 0.0419 5 0 amp 6 0.026 0.3898 0.0666 6 -0.196 8.53 -0.0098 0.0006 somatic
103 1029_0W2 chr2 25768685 110678051 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 12545 1657 0.2751 0.2833 0.5744 370.5 0.2993 0.1057 5 1 amp 2;5;6 0.1185 0.3898 0.304 6 -0.196 86.07 0.0391 -0.0457 somatic
104 1029_0W2 chr2 110768336 112022385 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 233 54 0.392 0.4319 0.6474 436.0 0.5258 0.2928 6 1 amp 4;5;6 0.172 0.3898 0.4412 6 -0.196 18.57 -0.0345 0.046 somatic
105 1029_0W2 chr2 112022326 112055765 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 18 12 0.3455 0.3795 0.6487 5828.0 0.6146 0.3833 6 0 amp 2;3;6 0.1299 0.3898 0.3333 6 -0.196 6.08 0.0123 -0.0367 somatic
106 1029_0W2 chr2 112059926 113201423 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 383 78 0.5009 0.4839 0.6275 310.0 0.5062 0.289 4 1 amp 1;2;3;4;5 0.3638 0.3898 0.9334 6 -0.196 27.96 0.0533 -0.0705 somatic
107 1029_0W2 chr2 113215987 113278459 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 220 44 0.0894 0.1657 0.6472 8815.0 0.5587 0.32 3 0 amp 1;2;5 0.2064 0.3898 0.5295 6 -0.196 9.49 -0.0523 0.0216 somatic
108 1029_0W2 chr2 113278348 191953865 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 9321 1257 0.4137 0.4283 0.632 330.0 0.5553 0.337 6 1 amp 2;4 0.1638 0.3898 0.4202 6 -0.196 114.28 0.0049 -0.007 somatic
109 1029_0W2 chr2 191956254 241803960 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 8282 1475 0.2377 0.2503 0.5835 370.0 0.3416 0.135 3 1 amp 1;2;3;4;6 0.3524 0.3898 0.9041 6 -0.196 63.38 0.0036 -0.0062 somatic
110 1029_0W2 chr2 241804039 241873273 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 75 16 -0.1722 -0.1798 0.5854 857.8 0.396 0.1586 1 0 del 1;2;3;5 0.2552 0.3898 0.6547 6 -0.196 4.9 0.0247 0.0232 somatic
111 1029_0W2 chr20 87677 58714674 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 8684 1685 0.2825 0.2942 0.7345 420.0 1.003 1.0382 3 0 amp 1;2;3;4;5 0.3638 0.3898 0.9334 6 -0.196 113.78 0.0414 -0.0203 somatic
112 1029_0W2 chr20 58715129 58854984 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 47 14 -0.2676 -0.2502 0.7178 7511.0 1.0272 1.1129 2 0 cn-loh 1;2;3;4;5;6 0.3898 0.3898 1.0 6 -0.196 9.12 -0.2676 0.1013 somatic
113 1029_0W2 chr20 58854984 62310302 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 501 85 0.2696 0.2883 0.7318 470.7 1.045 1.1095 3 0 amp 1;2;3;4;6 0.3524 0.3898 0.9041 6 -0.196 25.58 0.0355 -0.0009 somatic
114 1029_0W2 chr20 62310349 64273595 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 1015 230 0.1192 0.1105 0.7302 528.6 1.0 1.0502 3 0 amp 1;3;4;5;6 0.3346 0.3898 0.8585 6 -0.196 33.89 -0.104 0.0412 somatic
115 1029_0W2 chr21 5117108 41449210 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 2646 460 0.33 0.3433 0.735 331.0 0.9753 1.0435 4 0 amp 1;4;5;6 0.2858 0.3898 0.7333 6 -0.196 65.11 -0.0327 0.0204 somatic
116 1029_0W2 chr21 41449118 41465107 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 15 10 0.3066 0.3483 0.7593 1201.0 1.2013 1.4469 3 0 amp 1;2;3;4;5;6 0.3898 0.3898 1.0 6 -0.196 8.52 0.0497 0.0556 somatic
117 1029_0W2 chr21 41465107 41490292 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 100 4 0.17 0.2177 0.7574 4203.0 1.2367 1.4342 3 0 amp 1;2;3;4;5;6 0.3898 0.3898 1.0 6 -0.196 6.77 -0.0869 0.0559 somatic
118 1029_0W2 chr21 41490292 41501812 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 79 9 0.1051 0.1882 0.7539 9213.0 1.1209 1.2526 3 0 amp 1;2;3;4;5;6 0.3898 0.3898 1.0 6 -0.196 7.81 -0.1518 0.041 somatic
119 1029_0W2 chr21 41501812 41504452 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 22 0 -0.1479 -0.1427 1 0 del 3;4;5 0.1948 0.3898 0.4998 6 -0.196 1.87 -0.0001 0.0 somatic
120 1029_0W2 chr21 41504452 41512132 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 57 20 -0.2096 -0.1355 0.7465 7422.5 1.1404 1.3 2 0 cn-loh 1;2;3;4;5;6 0.3898 0.3898 1.0 6 -0.196 11.44 -0.2096 0.2477 somatic
121 1029_0W2 chr21 41529916 44143396 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 668 235 0.3877 0.4182 0.7477 411.0 1.0765 1.2166 4 0 amp 1;2;4;5 0.315 0.3898 0.8082 6 -0.196 44.64 -0.0074 0.0034 somatic
122 1029_0W2 chr21 44144765 44697937 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 318 195 0.1827 0.1864 0.724 665.5 0.9918 1.0213 3 0 amp 1;3;4;5;6 0.3346 0.3898 0.8585 6 -0.196 30.2 -0.0405 0.0137 somatic
123 1029_0W2 chr21 44711413 45455983 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 168 19 0.1532 0.1771 0.7277 173.5 0.9878 1.0435 3 0 amp 1;2;3;4 0.3264 0.3898 0.8375 6 -0.196 10.39 -0.0649 0.0247 somatic
124 1029_0W2 chr21 45456030 46215847 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 245 150 0.1616 0.1531 0.7507 351.0 1.118 1.2928 3 0 amp 1;2;3;4;5 0.3638 0.3898 0.9334 6 -0.196 29.57 -0.0795 0.0608 somatic
125 1029_0W2 chr21 46216395 46664423 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 283 106 0.3913 0.4331 0.7387 422.7 1.0592 1.1634 4 0 amp 1;2;4;6 0.3036 0.3898 0.779 6 -0.196 28.9 0.0088 -0.009 somatic
126 1029_0W2 chr22 15528158 22026228 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 1551 290 0.2279 0.2182 0.5771 422.5 0.3479 0.1352 4 1 amp 2;4 0.1638 0.3898 0.4202 6 -0.196 26.23 0.0091 -0.0113 somatic
127 1029_0W2 chr22 22026168 22687349 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 208 44 0.0475 0.1288 0.6138 4260.0 0.3566 0.1414 2 0 cn-loh 1;4 0.2225 0.3898 0.5709 6 -0.196 6.89 0.0475 -0.0015 somatic
128 1029_0W2 chr22 22697932 23308200 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 665 182 -0.2759 -0.1838 0.5696 6686.8 0.3015 0.096 1 0 del 1;2;4 0.2776 0.3898 0.7123 6 -0.196 20.77 -0.0603 -0.0548 somatic
129 1029_0W2 chr22 23308200 25181759 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 597 149 0.2292 0.2303 0.5857 862.0 0.3416 0.1398 3 1 amp 1;2;3;4;5 0.3638 0.3898 0.9334 6 -0.196 17.36 -0.0119 0.0088 somatic
130 1029_0W2 chr22 25181700 36872464 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 2379 451 0.043 0.0552 0.6868 385.2 0.7774 0.6337 2 0 cn-loh 1;2;3;4;6 0.3524 0.3898 0.9041 6 -0.196 35.51 0.043 0.0082 somatic
131 1029_0W2 chr22 36875633 36936667 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 78 15 -0.4624 -0.4135 0.6806 2209.0 0.7108 0.5079 1 0 del 1;2;3;4;5;6 0.3898 0.3898 1.0 6 -0.196 12.69 -0.1497 0.2456 somatic
132 1029_0W2 chr22 36937334 36938547 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 35 6 -1.1218 -1.0906 0.7111 7321.0 0.8036 0.6475 0 0 del 1;2;3;4;5;6 0.3898 0.3898 1.0 6 -0.196 18.49 -0.4092 0.8914 somatic
133 1029_0W2 chr22 36938534 50782316 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 3857 812 -0.0367 -0.0327 0.6933 379.0 0.7957 0.6676 2 0 cn-loh 1;2;3;4;5 0.3638 0.3898 0.9334 6 -0.196 49.33 -0.0367 0.0121 somatic
134 1029_0W2 chr3 319726 3053926 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 132 30 0.0568 -0.0321 0.5847 185.0 0.3423 0.1445 3 0 amp 2;5 0.0925 0.3898 0.2373 6 -0.196 3.86 -0.0084 0.0166 somatic
135 1029_0W2 chr3 3053873 14493834 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 2345 298 0.3467 0.3734 0.5796 438.0 0.3312 0.1271 6 2 amp 4;5 0.146 0.3898 0.3746 6 -0.196 46.43 -0.0229 0.056 somatic
136 1029_0W2 chr3 14494831 62333411 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 9278 1315 0.2454 0.2502 0.5836 396.5 0.352 0.1413 5 1 amp 2;5;6 0.1185 0.3898 0.304 6 -0.196 67.91 0.0094 -0.0066 somatic
137 1029_0W2 chr3 62370082 81490493 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 1324 246 0.4692 0.4954 0.5569 438.0 0.1813 0.0415 5 2 amp 1;2;3;5 0.2552 0.3898 0.6547 6 -0.196 46.38 0.0017 0.0054 somatic
138 1029_0W2 chr3 81499074 181713721 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 10571 1701 0.2025 0.2196 0.5826 298.8 0.3456 0.1383 3 1 amp 1;2;4;5 0.315 0.3898 0.8082 6 -0.196 61.84 -0.0085 0.0135 somatic
139 1029_0W2 chr3 181713721 187726935 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 1769 255 0.3212 0.345 0.5771 436.0 0.3622 0.1508 6 2 amp 4;6 0.1346 0.3898 0.3453 6 -0.196 37.59 -0.0227 0.0598 somatic
140 1029_0W2 chr3 187728312 198169878 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 1518 273 0.0097 0.0489 0.6316 380.5 0.552 0.3869 2 0 cn-loh 1;2;3;6 0.2438 0.3898 0.6254 6 -0.196 18.28 0.0097 0.0006 somatic
141 1029_0W2 chr4 53399 1793503 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 482 77 0.2057 0.1893 0.571 531.0 0.356 0.1453 3 1 amp 1;3;4;6 0.2973 0.3898 0.7627 6 -0.196 13.09 0.0058 -0.0089 somatic
142 1029_0W2 chr4 1793729 1930824 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 189 3 -0.253 -0.2206 0.5819 3436.0 0.2654 0.0688 1 0 del 1;4;5;6 0.2858 0.3898 0.7333 6 -0.196 9.43 -0.0305 -0.0197 somatic
143 1029_0W2 chr4 1935097 42414762 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 4040 784 0.2476 0.2625 0.5855 367.3 0.344 0.1346 3 1 amp 1;2;3;4;5 0.3638 0.3898 0.9334 6 -0.196 46.33 0.0065 -0.0065 somatic
144 1029_0W2 chr4 42422761 177433370 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 12003 1693 0.1669 0.189 0.5831 239.8 0.3525 0.1458 6 0 amp 2 0.0551 0.3898 0.1415 6 -0.196 55.58 0.016 -0.0163 somatic
145 1029_0W2 chr4 177434372 190174838 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 1053 216 0.3372 0.3417 0.5767 347.5 0.3147 0.1251 6 2 amp 1;6 0.1398 0.3898 0.3588 6 -0.196 30.68 -0.0186 0.047 somatic
146 1029_0W2 chr5 113220 45696121 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 3931 655 0.4407 0.4477 0.5374 390.0 0.1724 0.0352 5 2 amp 2;4;5;6 0.2271 0.3898 0.5827 6 -0.196 74.56 0.0178 -0.0603 somatic
147 1029_0W2 chr5 50399805 141152638 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 9764 1296 0.0075 0.0201 0.6749 252.0 0.7571 0.6181 2 0 cn-loh 1;2;3;4 0.3264 0.3898 0.8375 6 -0.196 54.33 0.0075 0.0025 somatic
148 1029_0W2 chr5 141172785 141194947 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 61 31 -0.0176 0.0446 0.72 1000.0 0.8836 0.7942 2 0 cn-loh 1;2;3;4;5;6 0.3898 0.3898 1.0 6 -0.196 11.36 -0.0176 0.0962 somatic
149 1029_0W2 chr5 141199717 180569170 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 5891 1007 0.2608 0.2565 0.7341 415.0 0.9995 1.0371 3 0 amp 1;2;3;4;5 0.3638 0.3898 0.9334 6 -0.196 87.28 0.0197 -0.0226 somatic
150 1029_0W2 chr5 180569109 180649676 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 132 29 -0.1064 -0.0532 0.7394 1722.5 1.0408 1.0878 2 0 cn-loh 1;2;3;4;5;6 0.3898 0.3898 1.0 6 -0.196 12.66 -0.1064 0.2006 somatic
151 1029_0W2 chr5 180739122 181260807 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 146 46 0.3844 0.3186 0.7131 765.0 0.9268 0.9009 5 0 amp 1;2;3 0.2178 0.3898 0.5588 6 -0.196 18.22 -0.0234 0.0094 somatic
152 1029_0W2 chr6 304553 26045663 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 2417 412 0.2704 0.2729 0.7264 353.5 0.9646 0.9888 3 0 amp 1;2;4;5;6 0.341 0.3898 0.8748 6 -0.196 55.18 0.0433 -0.0029 somatic
153 1029_0W2 chr6 26045567 26157069 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 94 25 -0.0922 -0.2249 0.7225 2372.0 0.9452 0.8962 2 0 cn-loh 1;2;3;4;5;6 0.3898 0.3898 1.0 6 -0.196 10.7 -0.0922 0.1175 somatic
154 1029_0W2 chr6 26157009 30704410 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 1396 226 0.2488 0.248 0.7233 776.9 0.9816 0.9928 3 0 amp 1;2;4;5;6 0.341 0.3898 0.8748 6 -0.196 39.88 0.0217 -0.0047 somatic
155 1029_0W2 chr6 30704469 30705893 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 12 7 -0.3168 -0.3266 0.7497 14014.0 1.0585 1.1199 2 0 cn-loh 1;2;3;4;5;6 0.3898 0.3898 1.0 6 -0.196 7.04 -0.3168 0.2672 somatic
156 1029_0W2 chr6 30705848 31264825 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 300 119 0.2634 0.2351 0.7078 765.0 0.9566 0.9531 3 0 amp 1;2;4;5 0.315 0.3898 0.8082 6 -0.196 24.07 0.0524 -0.0111 somatic
157 1029_0W2 chr6 31266616 31356808 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 59 54 -0.9993 -0.8268 0.6757 2592.6 0.8571 0.7503 0 0 del 1;2;3;4;5;6 0.3898 0.3898 1.0 6 -0.196 23.73 -0.2867 0.7184 somatic
158 1029_0W2 chr6 31357588 31505871 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 30 65 0.1054 0.1525 0.6817 1111.0 0.9406 0.8971 3 0 amp 1;4;5 0.2599 0.3898 0.6667 6 -0.196 13.28 -0.0708 0.0182 somatic
159 1029_0W2 chr6 31506090 32440089 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 1236 132 0.2512 0.2414 0.7237 498.5 0.899 0.9122 3 0 amp 1;2;4;5;6 0.341 0.3898 0.8748 6 -0.196 33.49 0.0241 -0.0098 somatic
160 1029_0W2 chr6 32442391 33176802 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 481 491 0.0981 0.1687 0.6617 4768.3 0.9031 0.8355 3 0 amp 2;4;5;6 0.2271 0.3898 0.5827 6 -0.196 32.91 -0.0571 0.0272 somatic
161 1029_0W2 chr6 33176958 47811775 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 4020 701 0.2504 0.2412 0.7337 411.0 1.0153 1.0648 3 0 amp 1;2;3;4;6 0.3524 0.3898 0.9041 6 -0.196 71.37 0.0163 0.0062 somatic
162 1029_0W2 chr6 47823940 64590553 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 1358 211 0.3531 0.4016 0.63 246.0 0.5438 0.3395 6 1 amp 4;5 0.146 0.3898 0.3746 6 -0.196 38.27 -0.0165 0.0214 somatic
163 1029_0W2 chr6 64591049 152011725 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 9790 1272 -0.044 -0.0267 0.5306 241.5 0.1629 0.0344 1 0 del 5;6 0.0633 0.3898 0.1625 6 -0.196 12.99 0.0024 0.0058 somatic
164 1029_0W2 chr6 152011620 152128223 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 107 5 -0.6168 -0.5441 0.5161 1835.8 0.077 0.0014 0 0 del 1;2;3;4;6 0.3524 0.3898 0.9041 6 -0.196 17.16 0.01 0.0458 somatic
165 1029_0W2 chr6 152128223 170584636 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 2623 562 0.0918 0.0888 0.5353 393.0 0.1527 0.0304 3 1 amp 2;5;6 0.1185 0.3898 0.304 6 -0.196 13.72 0.0088 -0.0108 somatic
166 1029_0W2 chr7 193154 5605387 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 1186 387 0.5115 0.4725 0.6488 695.0 0.6082 0.3863 6 1 amp 1;2;5 0.2064 0.3898 0.5295 6 -0.196 53.77 0.013 -0.0183 somatic
167 1029_0W2 chr7 5605383 6026849 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 185 57 0.8711 0.8989 0.6666 1127.0 0.5849 0.3707 6 2 amp 1;2;3;4;5;6 0.3898 0.3898 1.0 6 -0.196 33.77 0.0396 0.2238 somatic
168 1029_0W2 chr7 6026841 6826197 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 311 50 0.7199 0.7191 0.6504 615.0 0.5931 0.3917 6 2 amp 1;2;3;4;6 0.3524 0.3898 0.9041 6 -0.196 35.36 -0.0497 0.1692 somatic
169 1029_0W2 chr7 7234265 13892638 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 386 57 0.1642 0.1667 0.5644 203.0 0.3136 0.1044 3 1 amp 1;2;5;6 0.2323 0.3898 0.5961 6 -0.196 9.32 0.0056 -0.0059 somatic
170 1029_0W2 chr7 13892878 13988433 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 545 122 0.3402 0.3452 0.5823 3962.5 0.3142 0.1055 7 2 high-amp 1 0.1139 0.3898 0.2921 6 -0.196 22.74 -0.0212 0.0521 somatic
171 1029_0W2 chr7 13988433 34051989 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 2016 375 0.2544 0.2618 0.5665 280.0 0.3264 0.1199 6 2 amp 2;3 0.1039 0.3898 0.2667 6 -0.196 32.13 -0.0181 0.0474 somatic
172 1029_0W2 chr7 34055118 151203573 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 15659 2395 0.447 0.4462 0.5418 448.0 0.159 0.0341 5 2 amp 2;3;4;6 0.2385 0.3898 0.612 6 -0.196 151.07 0.0057 -0.0462 somatic
173 1029_0W2 chr7 151204509 159144810 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 1201 275 0.5374 0.5564 0.5437 563.0 0.1505 0.0263 5 2 amp 1;3;4;6 0.2973 0.3898 0.7627 6 -0.196 50.35 0.0055 -0.0647 somatic
174 1029_0W2 chr8 166190 32740675 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 4453 975 0.0344 0.0308 0.535 347.0 0.1446 0.0289 4 0 amp 6 0.026 0.3898 0.0666 6 -0.196 9.14 -0.0026 -0.0039 somatic
175 1029_0W2 chr8 32740675 43356929 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 2264 213 -0.0826 -0.0634 0.5291 644.0 0.1061 0.0183 1 0 del 2;5 0.0925 0.3898 0.2373 6 -0.196 10.92 -0.0143 -0.012 somatic
176 1029_0W2 chr8 47260901 48050005 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 397 20 1.6875 1.6916 0.5546 3560.0 0.1898 0.0444 13 6 high-amp 1;2;3;4;5;6 0.3898 0.3898 1.0 6 -0.196 90.43 0.035 0.0818 somatic
177 1029_0W2 chr8 48060622 56010719 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 487 88 0.8896 0.9169 0.8428 587.0 1.7057 2.9345 6 0 amp 1;2;3;4;5;6 0.3898 0.3898 1.0 6 -0.196 62.92 0.0581 0.071 somatic
178 1029_0W2 chr8 56010719 56074467 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 29 14 0.7718 0.9037 0.8453 1214.7 1.6694 2.7901 6 0 amp 1;2;3;4;5;6 0.3898 0.3898 1.0 6 -0.196 17.84 -0.0597 0.1 somatic
179 1029_0W2 chr8 56112941 127734398 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 6106 876 0.8605 0.8773 0.8281 392.7 1.543 2.4594 6 0 amp 1;2;3;4;5;6 0.3898 0.3898 1.0 6 -0.196 206.88 0.029 -0.0433 somatic
180 1029_0W2 chr8 127734318 127737918 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 88 2 -0.0431 -0.0013 0.8381 35650.0 1.6147 2.6062 1 0 del 2 0.0551 0.3898 0.1415 6 -0.196 1.09 -0.0028 0.0 somatic
181 1029_0W2 chr8 127737827 127738237 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 8 6 -0.0513 -0.0433 0.8408 24429.0 1.6901 2.8561 3 0 amp 1;2;3;4;5;6 0.3898 0.3898 1.0 6 -0.196 9.02 -0.3082 0.5888 somatic
182 1029_0W2 chr8 127738177 127743343 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 50 0 -0.0023 0.1037 2 0 cn-loh 1 0.1139 0.3898 0.2921 6 -0.196 0.04 -0.0023 0.0 somatic
183 1029_0W2 chr8 127743283 127743523 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 3 4 0.0556 0.1398 0.8152 9047.0 1.5085 2.2743 3 0 amp 1;2;3;4;5;6 0.3898 0.3898 1.0 6 -0.196 6.55 -0.2013 0.4055 somatic
184 1029_0W2 chr8 127743463 127749388 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 32 11 0.9631 1.0148 0.8265 2968.0 1.624 2.64 7 0 high-amp 1;2;3;4;5;6 0.3898 0.3898 1.0 6 -0.196 18.55 -0.0183 -0.1531 somatic
185 1029_0W2 chr8 127751786 140746919 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 897 230 0.8553 0.8356 0.8185 537.5 1.5205 2.3629 6 0 amp 1;2;3;4;5 0.3638 0.3898 0.9334 6 -0.196 84.82 0.0665 -0.0168 somatic
186 1029_0W2 chr8 140750310 144511602 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 1558 340 0.6402 0.6298 0.8183 837.0 1.5124 2.3034 5 0 amp 1;2;3;4;5;6 0.3898 0.3898 1.0 6 -0.196 90.92 -0.024 0.0438 somatic
187 1029_0W2 chr8 144511675 144516506 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 61 14 0.2922 0.303 0.8353 7210.0 1.5634 2.4466 4 0 amp 1;2;3;4;5;6 0.3898 0.3898 1.0 6 -0.196 14.73 -0.1826 0.346 somatic
188 1029_0W2 chr8 144516433 145054212 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 230 39 0.7454 0.7299 0.8344 1012.5 1.5986 2.546 6 0 amp 1;2;3;4;5;6 0.3898 0.3898 1.0 6 -0.196 37.55 -0.0861 0.0168 somatic
189 1029_0W2 chr9 15056 5569971 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 1035 219 0.02 0.0654 0.6751 501.0 0.7087 0.5207 2 0 cn-loh 1;3;4;5;6 0.3346 0.3898 0.8585 6 -0.196 22.9 0.02 -0.0003 somatic
190 1029_0W2 chr9 5569898 38620303 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 3968 629 -0.0187 -0.0053 0.687 331.0 0.7756 0.6393 2 0 cn-loh 1;2;3;4;6 0.3524 0.3898 0.9041 6 -0.196 41.4 -0.0187 0.0059 somatic
191 1029_0W2 chr9 39073862 83978473 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 1936 305 0.2815 0.3351 0.7146 313.0 0.8536 0.8278 4 0 amp 2;3;4;5 0.2499 0.3898 0.6412 6 -0.196 47.45 -0.0403 0.0256 somatic
192 1029_0W2 chr9 83979243 84874446 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 370 34 0.161 0.1204 0.7243 3366.0 0.9849 0.9837 3 0 amp 1;2;4;5;6 0.341 0.3898 0.8748 6 -0.196 14.86 -0.0661 0.0152 somatic
193 1029_0W2 chr9 84874446 97432238 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 2277 354 0.2483 0.2726 0.733 471.0 1.0133 1.0516 3 0 amp 1;2;3;4;6 0.3524 0.3898 0.9041 6 -0.196 51.61 0.0142 0.0052 somatic
194 1029_0W2 chr9 97439201 130878600 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 5725 971 0.2656 0.277 0.7362 378.5 1.0144 1.0683 3 0 amp 1;2;3;4;5 0.3638 0.3898 0.9334 6 -0.196 86.92 0.0245 -0.0137 somatic
195 1029_0W2 chr9 130878491 130887682 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 49 15 -0.3361 -0.2928 0.7396 7100.0 1.0155 1.0441 2 0 cn-loh 1;2;3;4;5;6 0.3898 0.3898 1.0 6 -0.196 10.91 -0.3361 0.2114 somatic
196 1029_0W2 chr9 130893388 132892497 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 653 148 0.2469 0.2759 0.7355 383.8 0.9982 1.0312 3 0 amp 1;2;3;4;5 0.3638 0.3898 0.9334 6 -0.196 31.46 0.0058 -0.017 somatic
197 1029_0W2 chr9 132892497 132895017 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 21 5 -0.0315 0.0191 0.7431 14370.0 1.0571 1.1156 2 0 cn-loh 1;2;3;4;5;6 0.3898 0.3898 1.0 6 -0.196 5.25 -0.0315 0.2325 somatic
198 1029_0W2 chr9 132895017 136489553 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 1278 337 0.1656 0.1789 0.7385 452.3 1.0563 1.1418 3 0 amp 1;2;3;4;6 0.3524 0.3898 0.9041 6 -0.196 43.74 -0.0685 0.0327 somatic
199 1029_0W2 chr9 136493834 136494818 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 10 6 -0.2911 -0.1441 0.7269 14735.0 1.0054 1.01 2 0 cn-loh 1;2;3;4;5;6 0.3898 0.3898 1.0 6 -0.196 5.83 -0.2911 0.1493 somatic
200 1029_0W2 chr9 136494736 136497218 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 62 0 -0.94 -0.8333 0 0 del 1;2;3;4;5;6 0.3898 0.3898 1.0 6 -0.196 19.9 -0.2274 0.0 somatic
201 1029_0W2 chr9 136497136 136497338 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 3 2 -1.1349 -1.1047 0.7606 10328.0 1.1678 1.3624 0 0 del 1;2;3;4;5;6 0.3898 0.3898 1.0 6 -0.196 5.29 -0.4223 0.0 somatic
202 1029_0W2 chr9 136497227 136513546 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 178 10 -0.6011 -0.4939 0.746 4957.0 1.0262 1.0673 1 0 del 1;2;3;4;5;6 0.3898 0.3898 1.0 6 -0.196 22.82 -0.2884 0.5722 somatic
203 1029_0W2 chr9 136513457 136524030 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 89 21 -0.5654 -0.482 0.7381 4156.5 0.9904 0.9826 1 0 del 1;2;3;4;5;6 0.3898 0.3898 1.0 6 -0.196 17.72 -0.2527 0.5298 somatic
204 1029_0W2 chr9 136529043 136837920 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 149 59 0.0785 0.0907 0.7362 516.0 1.0347 1.0924 3 0 amp 1;2;4;5;6 0.341 0.3898 0.8748 6 -0.196 17.08 -0.1486 0.0542 somatic
205 1029_0W2 chr9 136837933 138231128 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 919 98 0.1247 0.0849 0.7403 346.5 0.9954 1.0612 3 0 amp 1;2;3;4;6 0.3524 0.3898 0.9041 6 -0.196 24.28 -0.1094 0.0367 somatic
206 1029_0W2 chrX 2853959 27981390 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 2176 2 -0.4262 -0.4274 0.7426 118.5 0.4523 0.1487 4 0 amp 1;3 0.1627 0.3898 0.4173 6 -0.196 53.46 -0.6436 0.0 somatic
207 1029_0W2 chrX 28789296 37655871 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 504 0 -0.7298 -0.7272 2 0 amp 1;2;5 0.2064 0.3898 0.5295 6 -0.196 44.06 -0.7298 0.0 somatic
208 1029_0W2 chrX 37659462 111912810 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 8183 11 -0.5557 -0.5427 0.6011 926.0 0.4262 0.1806 2 0 amp 1;2;3;4;5 0.3638 0.3898 0.9334 6 -0.196 135.2 -0.5557 -0.3787 somatic
209 1029_0W2 chrX 111912739 155545278 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 4707 27 -0.2054 -0.1963 0.6504 1092.0 0.1988 0.0701 5 0 high-amp 3;4;6 0.1834 0.3898 0.4705 6 -0.196 38.51 -0.556 -0.1561 somatic
210 1029_0W2 chrY 2786997 20779689 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1 316 0 -0.9587 -0.958 2 0 amp 6 0.026 0.3898 0.0666 6 -0.196 45.83 -0.9587 0.0 somatic
211 rows