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1029_0W2_segments.tsv
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s3://ai-pipelines-experiment/chnobles/nf-runs/probe-agg-test/tumor_only/segments/1029_0W2_segments.tsv
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61.3 KB
Workflow Run
nf-probe-agg-test
Published
Jun 03, 2026 7:11 AM

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seg_id specimen_id chrom start end tumor_sample_id normal_sample_id n_probes n_het_sites cnlr_median cnlr_wmean mean_mbaf median_het_depth mean_valor mafR tcn lcn call clone_subset clone_purity purity clonal_frac n_clones dipLogR z_score residual_lr residual_lor sample_type flowcell sample_id
1 1029_0W2 chr1 69641 3579989 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1246 330 -0.1534 -0.1601 0.6902 404.5 0.7831 0.6549 2 0 cn-loh 1;2;3;4 0.3487 0.3786 0.9211 5 -0.192 34.89 -0.1534 0.0334 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
2 1029_0W2 chr1 3595332 22644243 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 5138 1199 0.0135 0.0043 0.6832 439.2 0.7567 0.6111 2 0 cn-loh 1;2;3;4 0.3487 0.3786 0.9211 5 -0.192 56.3 0.0135 0.0025 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
3 1029_0W2 chr1 22647226 50490695 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 7139 889 0.0312 0.0236 0.6871 402.5 0.7782 0.6286 2 0 cn-loh 1;2;3;4 0.3487 0.3786 0.9211 5 -0.192 50.15 0.0312 0.0188 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
4 1029_0W2 chr1 50491670 57023690 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1349 0 0.0042 0.0048 2 0 cn-loh 1 0.1169 0.3786 0.3087 5 -0.192 0.47 0.0042 0.0 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
5 1029_0W2 chr1 57025951 109761805 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 5656 898 -0.0564 -0.0589 0.684 226.0 0.76 0.6169 2 0 cn-loh 1;2;3;4 0.3487 0.3786 0.9211 5 -0.192 49.62 -0.0564 -0.0088 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
6 1029_0W2 chr1 109910836 145099116 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 2470 306 -0.2587 -0.2659 0.6159 415.0 0.4684 0.2387 1 0 del 1;2;3;4 0.3487 0.3786 0.9211 5 -0.192 42.62 0.0177 0.0042 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
7 1029_0W2 chr1 145103006 150553157 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1019 62 0.5355 0.5582 0.6339 452.0 0.5409 0.3131 5 1 amp 1;3;4 0.2708 0.3786 0.7152 5 -0.192 52.82 0.0437 -0.0832 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
8 1029_0W2 chr1 150553172 185091753 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 8600 1509 0.4924 0.4725 0.6355 500.8 0.5496 0.3267 4 1 amp 1;2;3;4;5 0.3786 0.3786 1.0 5 -0.192 146.12 0.0292 -0.0435 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
9 1029_0W2 chr1 185098018 247868072 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 9588 1672 0.2405 0.2359 0.586 378.0 0.343 0.1354 4 1 amp 3;4;5 0.1838 0.3786 0.4854 5 -0.192 76.93 -0.0029 -0.0066 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
10 1029_0W2 chr1 247875843 248918363 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 273 119 0.2752 0.2513 0.5978 1563.5 0.3878 0.1498 6 1 amp 2;5 0.1078 0.3786 0.2848 5 -0.192 16.58 -0.0065 0.0175 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
11 1029_0W2 chr10 47057 14843601 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1302 326 0.3858 0.3759 0.586 396.8 0.3441 0.1389 6 2 amp 2;4;5 0.1645 0.3786 0.4345 5 -0.192 44.15 -0.0246 0.0586 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
12 1029_0W2 chr10 14848574 121484332 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 13531 2483 0.2637 0.2646 0.5806 354.0 0.322 0.1213 4 1 amp 3;4;5 0.1838 0.3786 0.4854 5 -0.192 98.52 0.0203 -0.0302 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
13 1029_0W2 chr10 121484332 121592868 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 273 53 0.2454 0.3245 0.5754 6994.0 0.3024 0.0944 5 1 amp 1 0.1169 0.3786 0.3087 5 -0.192 13.23 0.0124 -0.0062 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
14 1029_0W2 chr10 121592868 133626762 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1666 345 0.2693 0.2681 0.5807 450.5 0.3209 0.123 3 1 amp 1;2;3;4;5 0.3786 0.3786 1.0 5 -0.192 35.52 0.0192 -0.033 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
15 1029_0W2 chr11 193064 1016415 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 669 179 -0.1167 -0.1241 0.5392 417.0 0.1544 0.0298 1 0 del 2;4 0.1346 0.3786 0.3556 5 -0.192 9.84 -0.0162 -0.0266 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
16 1029_0W2 chr11 1016463 1018432 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 10 39 -0.4776 -0.5322 0.6307 2062.6 0.5232 0.2715 1 0 del 1;2;3;4;5 0.3786 0.3786 1.0 5 -0.192 8.53 -0.1748 0.0419 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
17 1029_0W2 chr11 1018482 2929364 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 801 225 -0.2523 -0.2596 0.5522 452.0 0.2048 0.0621 1 0 del 2;3;4 0.2319 0.3786 0.6124 5 -0.192 22.49 -0.0745 -0.0917 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
18 1029_0W2 chr11 2949152 54707745 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 6470 1111 0.0356 0.0302 0.5419 386.5 0.1659 0.0381 4 0 amp 5 0.0299 0.3786 0.0789 5 -0.192 12.85 -0.0069 0.0112 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
19 1029_0W2 chr11 55265554 56743303 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 300 143 0.1587 0.1878 0.5824 889.2 0.3271 0.1134 6 0 amp 4 0.0567 0.3786 0.1497 5 -0.192 11.67 0.0038 -0.002 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
20 1029_0W2 chr11 56743308 114706923 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 11288 1689 0.2276 0.2246 0.5804 376.0 0.3207 0.1223 4 1 amp 2;4;5 0.1645 0.3786 0.4345 5 -0.192 78.05 0.0079 -0.0012 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
21 1029_0W2 chr11 115176426 134387716 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 3605 710 0.291 0.3012 0.5835 441.0 0.3321 0.1315 5 1 amp 2;4 0.1346 0.3786 0.3556 5 -0.192 56.08 0.0256 -0.0401 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
22 1029_0W2 chr12 66830 9077887 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 2553 526 0.4814 0.4712 0.7712 507.5 1.2017 1.4892 4 0 amp 1;2;3;4;5 0.3786 0.3786 1.0 5 -0.192 95.41 0.0182 -0.055 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
23 1029_0W2 chr12 9079624 11393276 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 485 135 0.2381 0.2483 0.7456 305.5 1.0487 1.1826 3 0 amp 1;2;3;4;5 0.3786 0.3786 1.0 5 -0.192 31.02 -0.012 -0.0099 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
24 1029_0W2 chr12 11393296 11885685 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 911 157 0.5394 0.5488 0.7543 7155.0 1.1174 1.2639 5 0 amp 1;2;3 0.292 0.3786 0.7714 5 -0.192 58.46 0.0153 -0.007 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
25 1029_0W2 chr12 11885685 21491737 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1246 157 0.4806 0.4636 0.7725 351.0 1.2062 1.4924 4 0 amp 1;2;3;4;5 0.3786 0.3786 1.0 5 -0.192 61.22 0.0174 -0.0547 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
26 1029_0W2 chr12 21491648 21773362 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 82 36 0.6117 0.5945 0.8183 447.0 1.4914 2.2499 5 0 amp 1;2;3;4;5 0.3786 0.3786 1.0 5 -0.192 25.83 -0.0371 0.0693 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
27 1029_0W2 chr12 21773369 31792102 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1256 255 0.6216 0.6636 0.8069 263.0 1.4086 2.0278 5 0 amp 1;2;3;4;5 0.3786 0.3786 1.0 5 -0.192 83.08 -0.0272 -0.017 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
28 1029_0W2 chr12 31792061 31792342 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 3 2 0.5789 0.6675 0.7989 19748.0 1.3791 1.9017 6 0 amp 1;3;5 0.244 0.3786 0.6444 5 -0.192 3.05 0.0056 0.0 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
29 1029_0W2 chr12 31980897 31987370 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 18 2 0.4275 0.4489 0.8468 303.5 1.7003 2.8675 6 0 amp 1;4 0.1736 0.3786 0.4584 5 -0.192 5.52 -0.0024 0.0 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
30 1029_0W2 chr12 32107273 38324015 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 202 34 1.1149 1.0875 0.6453 355.0 0.5927 0.3815 8 2 high-amp 1;2;3;4;5 0.3786 0.3786 1.0 5 -0.192 48.79 0.0201 -0.1851 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
31 1029_0W2 chr12 38653868 39443025 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 126 5 0.2733 0.2732 0.5372 152.0 0.1486 0.0059 5 2 amp 2;4 0.1346 0.3786 0.3556 5 -0.192 9.35 0.0079 -0.0278 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
32 1029_0W2 chr12 39553854 41020483 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 468 128 -0.2323 -0.1988 0.6743 150.0 0.6993 0.5213 1 0 del 1;2;3;4;5 0.3786 0.3786 1.0 5 -0.192 22.62 0.0705 0.1868 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
33 1029_0W2 chr12 41025149 49039349 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1651 132 -0.0311 -0.0079 0.6901 297.0 0.7923 0.6465 2 0 cn-loh 1;2;3;4 0.3487 0.3786 0.9211 5 -0.192 19.65 -0.0311 0.0263 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
34 1029_0W2 chr12 49039270 49052278 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 255 12 -0.4052 -0.4064 0.6876 7010.5 0.7885 0.6267 1 0 del 1;2;3;4;5 0.3786 0.3786 1.0 5 -0.192 20.6 -0.1024 0.3036 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
35 1029_0W2 chr12 49052202 49052398 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 3 2 -0.3639 -0.3483 0.6861 10308.0 0.7817 0.6106 0 0 del 1;2;5 0.2247 0.3786 0.5935 5 -0.192 1.92 0.0033 0.0 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
36 1029_0W2 chr12 49052295 71583959 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 6098 883 0.0275 0.0194 0.6915 421.0 0.7984 0.6729 2 0 cn-loh 1;2;3;4;5 0.3786 0.3786 1.0 5 -0.192 51.17 0.0275 -0.0286 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
37 1029_0W2 chr12 71583944 71586359 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 22 3 0.4773 0.5556 0.6766 8840.0 0.738 0.5439 7 1 high-amp 2;4;5 0.1645 0.3786 0.4345 5 -0.192 7.37 -0.0197 0.1295 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
38 1029_0W2 chr12 71610983 105152481 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 3563 446 -0.07 -0.0331 0.6983 175.0 0.8241 0.7139 2 0 cn-loh 1;2;3;4;5 0.3786 0.3786 1.0 5 -0.192 38.72 -0.07 -0.018 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
39 1029_0W2 chr12 105156679 113009274 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1931 254 0.1163 0.1143 0.6993 385.0 0.8363 0.7206 3 0 amp 1;2;4;5 0.2814 0.3786 0.7432 5 -0.192 32.44 -0.0736 0.0264 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
40 1029_0W2 chr12 113010353 113059096 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 38 9 -0.4113 -0.4986 0.6854 9229.0 0.7779 0.6407 1 0 del 1;2;3;4;5 0.3786 0.3786 1.0 5 -0.192 9.27 -0.1085 0.2946 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
41 1029_0W2 chr12 113059036 113097912 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 79 1 -0.2385 -0.2425 0.6929 11307.0 0.8138 0 0 del 3;4 0.1539 0.3786 0.4065 5 -0.192 6.45 0.0026 0.0 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
42 1029_0W2 chr12 113097912 114403934 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 266 17 0.0974 0.1023 0.7002 192.5 0.8382 0.722 3 0 amp 1;3;4 0.2708 0.3786 0.7152 5 -0.192 8.71 -0.0858 0.0422 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
43 1029_0W2 chr12 114670199 114684213 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 65 2 -0.7653 -0.7143 0.5075 2079.0 0.0298 0.0 0 0 del 1;2;3;4;5 0.3786 0.3786 1.0 5 -0.192 18.79 -0.0789 0.0 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
44 1029_0W2 chr12 115961269 120737063 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 861 121 0.1428 0.1184 0.6929 320.0 0.8063 0.6738 3 0 amp 1;3;4 0.2708 0.3786 0.7152 5 -0.192 22.73 -0.0404 0.0205 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
45 1029_0W2 chr12 120737023 121001722 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 85 27 -0.1536 -0.1791 0.6878 2361.0 0.7881 0.6228 2 0 cn-loh 1;2;3;4;5 0.3786 0.3786 1.0 5 -0.192 9.92 -0.1536 -0.0234 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
46 1029_0W2 chr12 121001722 121814282 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 281 60 0.0528 0.0225 0.6872 310.5 0.7782 0.6294 2 0 cn-loh 1;2;3;4 0.3487 0.3786 0.9211 5 -0.192 13.05 0.0528 0.0138 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
47 1029_0W2 chr12 121814222 122060028 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 249 31 -0.1726 -0.181 0.7107 2049.0 0.8969 0.8107 2 0 cn-loh 1;2;3;4;5 0.3786 0.3786 1.0 5 -0.192 13.7 -0.1726 0.0843 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
48 1029_0W2 chr12 122060028 123350432 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 643 77 0.0546 0.0628 0.6911 316.0 0.7912 0.7157 2 0 cn-loh 1;2;3;4 0.3487 0.3786 0.9211 5 -0.192 15.42 0.0546 0.0324 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
49 1029_0W2 chr12 123350366 133234376 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1582 407 0.2151 0.2269 0.6145 447.0 0.4561 0.2334 6 0 amp 2 0.078 0.3786 0.2059 5 -0.192 32.37 0.0061 0.0182 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
50 1029_0W2 chr13 19173833 23881779 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 636 100 0.1877 0.1823 0.5826 274.5 0.3308 0.127 3 1 amp 1;3;4;5 0.3007 0.3786 0.7941 5 -0.192 15.75 -0.0143 0.0224 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
51 1029_0W2 chr13 23881719 24767406 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 175 49 0.3228 0.4288 0.5732 307.0 0.2923 0.1011 6 2 amp 3;5 0.1271 0.3786 0.3357 5 -0.192 13.57 -0.004 0.046 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
52 1029_0W2 chr13 24774775 114326203 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 7385 1093 -0.0458 -0.0406 0.5345 255.5 0.1368 0.0261 1 0 del 2 0.078 0.3786 0.2059 5 -0.192 13.63 0.0116 0.0071 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
53 1029_0W2 chr14 18601119 20782034 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 367 150 -0.0589 -0.0463 0.6722 512.0 0.7092 0.5461 2 0 cn-loh 1;2;3;5 0.3219 0.3786 0.8503 5 -0.192 18.91 -0.0589 0.0153 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
54 1029_0W2 chr14 20782032 29636514 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1772 322 -0.004 0.0081 0.6872 416.5 0.7776 0.6233 2 0 cn-loh 1;2;3;4 0.3487 0.3786 0.9211 5 -0.192 29.84 -0.004 0.02 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
55 1029_0W2 chr14 29638448 35180813 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 562 78 -0.132 -0.0968 0.6999 126.5 0.8234 0.74 2 0 cn-loh 1;2;3;4;5 0.3786 0.3786 1.0 5 -0.192 17.97 -0.132 -0.021 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
56 1029_0W2 chr14 35266702 36516971 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 233 35 0.9138 0.9638 0.6596 454.0 0.6577 0.4447 7 2 high-amp 1;2;3;4;5 0.3786 0.3786 1.0 5 -0.192 43.26 -0.0471 0.0231 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
57 1029_0W2 chr14 36516971 36520993 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 29 4 0.6079 0.6032 0.6759 15519.0 0.7347 0.5332 6 1 amp 2;3;4;5 0.2617 0.3786 0.6913 5 -0.192 10.48 0.0005 0.0123 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
58 1029_0W2 chr14 36580888 37592512 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 92 13 -0.0505 -0.0245 0.7197 191.0 0.9367 0.8886 2 0 cn-loh 1;2;3;4;5 0.3786 0.3786 1.0 5 -0.192 7.25 -0.0505 0.0884 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
59 1029_0W2 chr14 37592512 37601179 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 16 7 -0.0835 -0.0354 0.7006 1054.5 0.8493 0.7212 2 0 cn-loh 1;2;3;4;5 0.3786 0.3786 1.0 5 -0.192 4.96 -0.0835 0.0287 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
60 1029_0W2 chr14 37606666 64162173 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 2665 414 -0.0767 -0.0631 0.68 175.5 0.7415 0.5807 2 0 cn-loh 1;2;3;5 0.3219 0.3786 0.8503 5 -0.192 33.61 -0.0767 0.026 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
61 1029_0W2 chr14 64162181 102777562 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 5468 953 0.015 0.0058 0.6866 299.0 0.7761 0.6278 2 0 cn-loh 1;2;3;4 0.3487 0.3786 0.9211 5 -0.192 50.77 0.015 0.0101 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
62 1029_0W2 chr14 102777562 102872016 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 21 7 -0.0592 -0.0288 0.6712 3163.8 0.7116 0.5168 2 0 cn-loh 1;2;3;4 0.3487 0.3786 0.9211 5 -0.192 4.2 -0.0592 -0.0286 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
63 1029_0W2 chr14 102875584 102906977 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 67 1 -0.016 -0.026 0.7043 1586.0 0.8672 1 0 del 5 0.0299 0.3786 0.0789 5 -0.192 0.4 0.0057 0.0 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
64 1029_0W2 chr14 102906977 102911057 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 34 7 -0.5433 -0.5037 0.6775 9779.0 0.7407 0.5444 1 0 del 1;2;3;4;5 0.3786 0.3786 1.0 5 -0.192 10.57 -0.2405 0.2584 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
65 1029_0W2 chr14 102911057 103687209 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 247 31 -0.0178 0.0319 0.68 223.5 0.7442 0.5786 2 0 cn-loh 1;2;3;4 0.3487 0.3786 0.9211 5 -0.192 8.71 -0.0178 -0.0276 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
66 1029_0W2 chr14 103697593 103712145 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 43 16 -0.4415 -0.4453 0.6617 5619.5 0.6689 0.4532 1 0 del 1;2;3;4;5 0.3786 0.3786 1.0 5 -0.192 10.59 -0.1387 0.1844 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
67 1029_0W2 chr14 103712862 103784959 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 44 16 -0.0289 0.0344 0.6948 303.0 0.8127 0.6757 2 0 cn-loh 1;2;3;4;5 0.3786 0.3786 1.0 5 -0.192 6.93 -0.0289 -0.02 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
68 1029_0W2 chr14 103797342 104769467 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 206 37 -0.2006 -0.192 0.6795 278.5 0.7412 0.5656 1 0 del 1;2;3;4;5 0.3786 0.3786 1.0 5 -0.192 12.94 0.1022 0.2279 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
69 1029_0W2 chr14 104769467 104952951 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 215 59 -0.4407 -0.4615 0.6955 683.0 0.8155 0.684 1 0 del 1;2;3;4;5 0.3786 0.3786 1.0 5 -0.192 23.91 -0.1379 0.3196 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
70 1029_0W2 chr14 104953008 105529785 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 231 67 -0.1482 -0.149 0.6752 302.0 0.7201 0.5631 2 0 cn-loh 1;2;3;5 0.3219 0.3786 0.8503 5 -0.192 14.24 -0.1482 0.0183 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
71 1029_0W2 chr14 105582585 105644938 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 56 30 -0.4466 -0.4405 0.6949 6052.3 0.8097 0.6028 1 0 del 1;2;3;4;5 0.3786 0.3786 1.0 5 -0.192 14.2 -0.1438 0.3371 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
72 1029_0W2 chr14 105645213 105645802 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 9 9 -0.5704 -0.5584 0.7785 8997.0 1.2243 1.5297 1 0 del 1;2;3;4;5 0.3786 0.3786 1.0 5 -0.192 9.82 -0.2676 0.7727 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
73 1029_0W2 chr14 105646033 105646607 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 9 6 -1.3818 -1.2681 0.5747 5109.0 0.3008 0.0914 0 0 del 1;2;3;4;5 0.3786 0.3786 1.0 5 -0.192 12.72 -0.6954 0.2899 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
74 1029_0W2 chr14 105646522 105769618 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 122 43 -0.7879 -0.7674 0.6884 5591.5 0.7854 0.6462 0 0 del 1;2;3;4;5 0.3786 0.3786 1.0 5 -0.192 28.85 -0.1015 0.782 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
75 1029_0W2 chr14 105769613 105773340 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 32 8 -1.0089 -1.079 0.6378 4894.0 0.5527 0.5684 0 0 del 1;2;3;4;5 0.3786 0.3786 1.0 5 -0.192 17.72 -0.3225 0.5544 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
76 1029_0W2 chr14 105773280 105774553 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 23 16 -0.983 -1.0005 0.7239 6886.0 0.9628 0.9391 0 0 del 1;2;3;4;5 0.3786 0.3786 1.0 5 -0.192 16.68 -0.2966 0.9543 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
77 1029_0W2 chr14 105774493 105860505 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 66 2 -0.8214 -0.7407 0.6642 1434.0 0.6794 0.4708 0 0 del 1;2;3;4;5 0.3786 0.3786 1.0 5 -0.192 20.32 -0.135 0.0 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
78 1029_0W2 chr14 105860445 105860685 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 3 2 -0.3559 -0.3173 0.693 5371.0 0.8139 0.6616 0 0 del 1;3 0.2141 0.3786 0.5655 5 -0.192 1.88 -0.0083 0.0 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
79 1029_0W2 chr14 105860625 105863145 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 39 0 0.1385 0.0984 3 0 amp 1;4;5 0.2034 0.3786 0.5373 5 -0.192 2.63 -0.0013 0.0 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
80 1029_0W2 chr14 105863085 105863325 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 3 8 -0.3994 -0.3869 0.7318 5045.8 1.0012 1.0022 1 0 del 1;2;3;4;5 0.3786 0.3786 1.0 5 -0.192 6.59 -0.0966 0.5168 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
81 1029_0W2 chr14 105863265 105865485 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 36 0 -0.4718 -0.5019 0 0 del 1;2;4;5 0.2814 0.3786 0.7432 5 -0.192 8.62 0.0049 0.0 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
82 1029_0W2 chr14 105865425 105918954 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 33 22 -0.3024 -0.3229 0.6705 976.9 0.7061 0.5105 1 0 del 1;2;3;4;5 0.3786 0.3786 1.0 5 -0.192 8.89 0.0004 0.2091 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
83 1029_0W2 chr14 105918988 106389586 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 110 50 0.0004 0.0217 0.7204 2432.0 0.9327 0.8518 2 0 cn-loh 1;2;3;4;5 0.3786 0.3786 1.0 5 -0.192 14.62 0.0004 0.1334 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
84 1029_0W2 chr14 106390459 106874851 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 92 38 0.0119 0.0301 0.6604 2425.0 0.6581 0.4636 2 0 cn-loh 1;2;3;5 0.3219 0.3786 0.8503 5 -0.192 8.9 0.0119 -0.0187 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
85 1029_0W2 chr15 20535569 40165216 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 2231 387 0.0811 0.0796 0.6834 415.0 0.7566 0.6041 2 0 cn-loh 1;2;3;4 0.3487 0.3786 0.9211 5 -0.192 34.0 0.0811 0.0023 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
86 1029_0W2 chr15 40170031 43406396 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 2068 378 -0.0356 -0.0439 0.6873 364.5 0.7774 0.6411 2 0 cn-loh 1;2;3;4 0.3487 0.3786 0.9211 5 -0.192 32.61 -0.0356 0.0177 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
87 1029_0W2 chr15 43406396 43525923 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 165 31 -0.0618 -0.1169 0.7055 1001.0 0.865 0.723 2 0 cn-loh 1;2;3;4;5 0.3786 0.3786 1.0 5 -0.192 10.78 -0.0618 0.0515 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
88 1029_0W2 chr15 43525916 82241432 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 7111 909 -0.0541 -0.0543 0.6859 249.2 0.771 0.6264 2 0 cn-loh 1;2;3;4 0.3487 0.3786 0.9211 5 -0.192 50.89 -0.0541 0.0025 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
89 1029_0W2 chr15 82252660 85736201 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 604 63 0.2579 0.2594 0.7299 335.0 0.9799 1.0033 3 0 amp 1;2;3;4 0.3487 0.3786 0.9211 5 -0.192 25.57 0.026 -0.0074 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
90 1029_0W2 chr15 85740210 87860456 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 74 22 0.2311 0.2646 0.735 548.5 1.0123 1.0286 3 0 amp 1;2;3;4 0.3487 0.3786 0.9211 5 -0.192 11.93 -0.0008 0.0281 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
91 1029_0W2 chr15 87860456 87957250 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 296 65 0.1167 0.1275 0.7249 5295.0 0.9637 0.9777 3 0 amp 1;2;3;5 0.3219 0.3786 0.8503 5 -0.192 18.22 -0.0986 0.0724 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
92 1029_0W2 chr15 87957250 88032370 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 589 43 0.2128 0.2081 0.7139 5101.5 0.9095 0.909 3 0 amp 1;2;3;5 0.3219 0.3786 0.8503 5 -0.192 20.51 -0.0025 0.0177 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
93 1029_0W2 chr15 88032370 88083250 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 386 61 0.1619 0.1627 0.7327 7291.5 1.0065 1.02 3 0 amp 1;2;3;4 0.3487 0.3786 0.9211 5 -0.192 19.87 -0.07 0.0411 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
94 1029_0W2 chr15 88083490 88124530 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 302 13 0.2122 0.1945 0.7211 9588.0 0.9489 0.9006 3 0 amp 1;2;3;4 0.3487 0.3786 0.9211 5 -0.192 13.53 -0.0197 -0.0162 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
95 1029_0W2 chr15 88124530 88125490 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 7 3 0.4997 0.3627 0.7196 10304.0 0.9415 0.8891 6 0 amp 2;3;5 0.205 0.3786 0.5416 5 -0.192 5.4 0.0039 -0.0005 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
96 1029_0W2 chr15 88125490 88131250 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 53 0 0.2579 0.1838 4 0 amp 1;2 0.1948 0.3786 0.5146 5 -0.192 5.72 0.0011 0.0 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
97 1029_0W2 chr15 88131250 88146484 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 114 16 0.1612 0.0783 0.7198 8140.5 0.9411 0.8958 3 0 amp 1;2;3;5 0.3219 0.3786 0.8503 5 -0.192 9.83 -0.0541 0.0491 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
98 1029_0W2 chr15 88146484 90241207 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 676 199 0.2132 0.2008 0.7281 526.0 0.9743 0.9973 3 0 amp 1;2;3;4 0.3487 0.3786 0.9211 5 -0.192 34.25 -0.0187 -0.0077 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
99 1029_0W2 chr15 90241271 92972454 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 600 106 0.2895 0.2896 0.7316 345.0 0.9914 1.015 3 0 amp 1;2;3;4 0.3487 0.3786 0.9211 5 -0.192 30.8 0.0576 0.0018 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
100 1029_0W2 chr15 92972344 92979210 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 14 6 0.351 0.3132 0.7711 5530.5 1.2095 1.4161 4 0 amp 1;2;3;4 0.3487 0.3786 0.9211 5 -0.192 7.68 -0.0806 0.059 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
101 1029_0W2 chr15 92979091 98960496 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 345 77 0.2476 0.2262 0.7427 567.0 1.0552 1.126 3 0 amp 1;2;3;4;5 0.3786 0.3786 1.0 5 -0.192 24.44 -0.0025 -0.013 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
102 1029_0W2 chr15 98960496 98962296 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 13 4 0.126 -0.0265 0.7253 14448.5 0.9703 0.9316 3 0 amp 1;2;3;4 0.3487 0.3786 0.9211 5 -0.192 4.5 -0.1059 0.0063 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
103 1029_0W2 chr15 98962296 101819015 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 429 117 0.2727 0.2842 0.7425 365.0 1.0482 1.1142 3 0 amp 1;2;3;4;5 0.3786 0.3786 1.0 5 -0.192 29.9 0.0226 -0.0223 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
104 1029_0W2 chr16 47432 2060521 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1500 446 0.036 0.0353 0.5882 443.0 0.3533 0.1417 2 0 cn-loh 3;4 0.1539 0.3786 0.4065 5 -0.192 15.55 0.036 0.0084 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
105 1029_0W2 chr16 2060605 2243437 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 413 47 -0.1536 -0.1797 0.5853 831.5 0.342 0.132 1 0 del 1;3;5 0.244 0.3786 0.6444 5 -0.192 10.66 0.0341 0.0372 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
106 1029_0W2 chr16 2244350 3739674 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1024 165 0.0925 0.1045 0.5942 586.0 0.3784 0.155 3 0 amp 3;5 0.1271 0.3786 0.3357 5 -0.192 13.42 0.0036 -0.014 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
107 1029_0W2 chr16 3739586 11965512 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1513 364 0.2162 0.1862 0.5829 386.8 0.3326 0.1216 4 1 amp 2;4;5 0.1645 0.3786 0.4345 5 -0.192 28.48 -0.0035 0.0097 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
108 1029_0W2 chr16 11966148 66768236 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 7028 1117 0.2844 0.2873 0.576 426.0 0.3027 0.1081 3 1 amp 1;2;3;4;5 0.3786 0.3786 1.0 5 -0.192 75.27 0.0343 -0.0534 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
109 1029_0W2 chr16 66769971 68191619 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1105 102 -0.034 -0.0441 0.6898 563.0 0.792 0.6434 2 0 cn-loh 1;2;3;4;5 0.3786 0.3786 1.0 5 -0.192 17.53 -0.034 -0.0313 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
110 1029_0W2 chr16 68191650 81130583 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 2237 424 0.0939 0.0903 0.6806 358.5 0.7428 0.5992 3 0 amp 1;3;5 0.244 0.3786 0.6444 5 -0.192 35.39 -0.0722 0.0373 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
111 1029_0W2 chr16 81130571 85911633 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 865 376 0.0676 0.0494 0.6816 498.0 0.7545 0.5875 2 0 cn-loh 1;2;3;4 0.3487 0.3786 0.9211 5 -0.192 31.85 0.0676 -0.0026 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
112 1029_0W2 chr16 85911527 90075935 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1388 243 -0.0837 -0.1056 0.683 484.5 0.7594 0.6058 2 0 cn-loh 1;2;3;4 0.3487 0.3786 0.9211 5 -0.192 27.06 -0.0837 0.0034 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
113 1029_0W2 chr17 137555 27303636 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 6927 1376 0.0173 0.0164 0.683 461.5 0.7583 0.6129 2 0 cn-loh 1;2;3;4 0.3487 0.3786 0.9211 5 -0.192 60.39 0.0173 0.0025 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
114 1029_0W2 chr17 27304751 76167829 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 14743 2319 0.2605 0.2457 0.5879 485.0 0.3506 0.1382 6 1 amp 3 0.0972 0.3786 0.2568 5 -0.192 102.19 0.0042 -0.0094 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
115 1029_0W2 chr17 76173680 83094575 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 2450 745 0.618 0.6275 0.6597 648.0 0.6525 0.4957 6 1 amp 1;2;4 0.2515 0.3786 0.6643 5 -0.192 100.7 0.0301 -0.0655 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
116 1029_0W2 chr18 47389 62716587 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 5754 893 0.0169 0.0039 0.5401 242.0 0.1587 0.0336 3 0 amp 5 0.0299 0.3786 0.0789 5 -0.192 8.25 -0.0045 0.0211 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
117 1029_0W2 chr18 62716677 63124493 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 99 7 -0.1959 -0.33 0.6175 198.0 0.4699 0.2866 1 0 del 1;3;4;5 0.3007 0.3786 0.7941 5 -0.192 6.43 0.0391 0.0646 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
118 1029_0W2 chr18 63124493 63318825 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 113 13 -0.1122 -0.2162 0.6141 3910.0 0.464 0.214 2 0 cn-loh 1;2;5 0.2247 0.3786 0.5935 5 -0.192 5.13 -0.1122 -0.0054 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
119 1029_0W2 chr18 63318720 80247372 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1035 183 -0.3131 -0.3022 0.6143 219.0 0.4568 0.2474 1 0 del 1;2;3;4 0.3487 0.3786 0.9211 5 -0.192 33.07 -0.0367 -0.0173 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
120 1029_0W2 chr19 110681 4124133 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 2392 638 0.061 0.028 0.5797 383.8 0.3191 0.1153 3 0 amp 3 0.0972 0.3786 0.2568 5 -0.192 18.2 -0.0075 0.0009 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
121 1029_0W2 chr19 4153684 8915577 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 2493 580 0.156 0.1583 0.5871 559.0 0.3482 0.1389 6 0 amp 4 0.0567 0.3786 0.1497 5 -0.192 29.2 0.0011 0.0104 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
122 1029_0W2 chr19 8915510 9160233 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 547 116 0.3498 0.3074 0.5955 5148.0 0.386 0.1547 6 1 amp 3;5 0.1271 0.3786 0.3357 5 -0.192 26.48 0.023 -0.0354 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
123 1029_0W2 chr19 9160264 58571441 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 17589 3674 0.1632 0.1451 0.5853 445.0 0.3405 0.1345 6 0 amp 4 0.0567 0.3786 0.1497 5 -0.192 77.79 0.0083 -0.0011 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
124 1029_0W2 chr2 41522 25799554 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 2637 445 0.0817 0.0798 0.5415 364.5 0.165 0.0366 3 1 amp 3;5 0.1271 0.3786 0.3357 5 -0.192 14.05 -0.0072 0.0049 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
125 1029_0W2 chr2 25799460 95279155 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 9572 1173 0.2903 0.2878 0.5702 341.0 0.2795 0.0943 6 2 amp 1 0.1169 0.3786 0.3087 5 -0.192 88.38 -0.0128 0.0494 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
126 1029_0W2 chr2 95279807 111092987 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 2986 513 0.2333 0.226 0.584 445.5 0.3311 0.1281 5 1 amp 1 0.1169 0.3786 0.3087 5 -0.192 41.68 0.0003 0.0008 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
127 1029_0W2 chr2 111117602 111122810 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 7 3 0.0142 0.0485 0.711 6487.0 0.8913 0.9033 2 0 cn-loh 1;2;3;4;5 0.3786 0.3786 1.0 5 -0.192 3.43 0.0142 0.0935 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
128 1029_0W2 chr2 111122810 112022385 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 199 46 0.4767 0.4813 0.6267 403.0 0.5158 0.2718 6 1 amp 2;3 0.1752 0.3786 0.4627 5 -0.192 21.71 0.0434 -0.0527 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
129 1029_0W2 chr2 112022326 112055765 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 18 12 0.8633 0.7194 0.6487 5828.0 0.6124 0.3791 6 2 amp 1;2;3;4;5 0.3786 0.3786 1.0 5 -0.192 12.08 0.05 0.1651 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
130 1029_0W2 chr2 112059926 113219827 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 416 80 0.4372 0.3978 0.631 312.0 0.5328 0.301 5 1 amp 1;2;5 0.2247 0.3786 0.5935 5 -0.192 28.86 0.0181 -0.0239 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
131 1029_0W2 chr2 113219827 113641017 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 221 53 0.2964 0.2995 0.648 7535.0 0.6084 0.3782 6 0 amp 1 0.1169 0.3786 0.3087 5 -0.192 16.57 -0.0067 0.0166 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
132 1029_0W2 chr2 113641306 129980729 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1172 163 0.4603 0.452 0.6253 327.0 0.5074 0.2794 6 1 amp 1;4 0.1736 0.3786 0.4584 5 -0.192 49.79 0.0304 -0.0592 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
133 1029_0W2 chr2 129980760 130474495 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 141 56 0.4427 0.4682 0.6874 1170.0 0.7585 0.5643 6 0 amp 2;4;5 0.1645 0.3786 0.4345 5 -0.192 20.45 0.0323 -0.0153 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
134 1029_0W2 chr2 130474447 191953865 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 7974 1071 0.3872 0.403 0.6266 322.0 0.5122 0.2869 5 1 amp 1;4;5 0.2034 0.3786 0.5373 5 -0.192 110.77 0.003 -0.0032 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
135 1029_0W2 chr2 191956254 238848702 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 7399 1243 0.2572 0.2556 0.5836 354.5 0.334 0.1316 4 1 amp 3;4;5 0.1838 0.3786 0.4854 5 -0.192 71.23 0.0138 -0.0178 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
136 1029_0W2 chr2 239048132 241873273 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 958 266 0.1649 0.1649 0.5839 444.0 0.3366 0.1253 6 0 amp 4 0.0567 0.3786 0.1497 5 -0.192 18.99 0.01 -0.0069 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
137 1029_0W2 chr20 87677 42077142 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 5928 1210 0.2803 0.2773 0.736 402.0 1.0146 1.0543 3 0 amp 1;2;3;4;5 0.3786 0.3786 1.0 5 -0.192 100.63 0.0302 -0.054 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
138 1029_0W2 chr20 42077142 42885990 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 150 37 0.2458 0.2042 0.7148 2990.0 0.9148 0.839 3 0 amp 1;2;3;5 0.3219 0.3786 0.8503 5 -0.192 15.28 0.0305 0.0187 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
139 1029_0W2 chr20 42953423 58714125 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 2604 447 0.3332 0.3376 0.7397 445.0 1.034 1.0965 4 0 amp 1;2;3 0.292 0.3786 0.7714 5 -0.192 70.13 -0.0365 0.032 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
140 1029_0W2 chr20 58714502 58854624 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 44 14 -0.2656 -0.2605 0.735 7511.0 1.0183 1.0408 2 0 cn-loh 1;2;3;4;5 0.3786 0.3786 1.0 5 -0.192 9.97 -0.2656 0.2141 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
141 1029_0W2 chr20 58854624 64273595 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1521 318 0.1676 0.1634 0.7242 514.1 0.954 0.9754 3 0 amp 1;2;3;5 0.3219 0.3786 0.8503 5 -0.192 41.9 -0.0477 0.0447 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
142 1029_0W2 chr21 5117108 29694060 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 807 123 0.2417 0.2913 0.7007 271.0 0.8109 0.7881 3 0 amp 1;3;4;5 0.3007 0.3786 0.7941 5 -0.192 28.78 0.0397 -0.0263 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
143 1029_0W2 chr21 29939381 41449210 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1839 341 0.3985 0.387 0.7435 366.0 1.0524 1.1349 4 0 amp 1;3;4;5 0.3007 0.3786 0.7941 5 -0.192 66.86 0.0193 0.022 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
144 1029_0W2 chr21 41449118 41465107 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 15 10 0.5194 0.5342 0.7593 1201.0 1.1481 1.3185 5 0 amp 1;2;3 0.292 0.3786 0.7714 5 -0.192 10.01 -0.0047 0.0066 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
145 1029_0W2 chr21 41465107 41494252 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 128 6 0.1671 0.2275 0.7556 4203.0 1.1222 1.1039 3 0 amp 1;2;3;4;5 0.3786 0.3786 1.0 5 -0.192 8.37 -0.083 0.0769 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
146 1029_0W2 chr21 41494252 41501812 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 51 7 0.3164 0.3406 0.7541 9213.0 1.1202 1.2554 3 0 amp 1;2;3;4;5 0.3786 0.3786 1.0 5 -0.192 9.49 0.0663 0.0728 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
147 1029_0W2 chr21 41501812 41504452 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 22 0 0.3456 0.3329 4 0 amp 1;3;4 0.2708 0.3786 0.7152 5 -0.192 4.94 -0.0001 0.0 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
148 1029_0W2 chr21 41504452 41512132 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 57 23 -0.1136 -0.2776 0.7446 7272.0 1.0668 1.1013 2 0 cn-loh 1;2;3;4;5 0.3786 0.3786 1.0 5 -0.192 11.61 -0.1136 0.2638 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
149 1029_0W2 chr21 41529916 43969300 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 579 230 0.3965 0.4126 0.7477 410.0 1.0688 1.1717 4 0 amp 1;2;3;5 0.3219 0.3786 0.8503 5 -0.192 45.72 -0.0061 -0.0174 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
150 1029_0W2 chr21 43970651 44143396 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 89 5 0.404 0.4284 0.7512 451.0 1.099 1.2109 4 0 amp 1;2;3;5 0.3219 0.3786 0.8503 5 -0.192 12.76 0.0014 0.0031 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
151 1029_0W2 chr21 44144765 44237124 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 71 37 -0.2878 -0.1673 0.7262 3655.0 0.9676 1.0314 2 0 cn-loh 1;2;3;4;5 0.3786 0.3786 1.0 5 -0.192 14.96 -0.2878 0.1654 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
152 1029_0W2 chr21 44237097 44697937 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 247 160 0.1927 0.1794 0.7221 582.5 0.9363 0.9965 3 0 amp 1;2;3;5 0.3219 0.3786 0.8503 5 -0.192 27.51 -0.0226 0.0363 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
153 1029_0W2 chr21 44711413 45455983 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 168 19 0.2321 0.2217 0.7277 173.5 0.9606 0.9656 3 0 amp 1;2;3;4 0.3487 0.3786 0.9211 5 -0.192 12.8 0.0002 -0.0355 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
154 1029_0W2 chr21 45456030 46215847 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 245 150 0.1801 0.1696 0.7507 351.0 1.0862 1.2246 3 0 amp 1;2;3;4;5 0.3786 0.3786 1.0 5 -0.192 30.1 -0.07 0.0202 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
155 1029_0W2 chr21 46216395 46664423 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 283 106 0.4252 0.4504 0.7387 422.7 1.0274 1.0822 5 0 amp 1;3;5 0.244 0.3786 0.6444 5 -0.192 31.6 -0.0247 0.0397 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
156 1029_0W2 chr22 15528158 22646441 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1744 325 0.2524 0.2235 0.5908 463.5 0.3631 0.1556 6 1 amp 3 0.0972 0.3786 0.2568 5 -0.192 34.72 -0.0039 0.0017 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
157 1029_0W2 chr22 22646448 23837935 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 880 270 -0.029 -0.0357 0.5739 5679.0 0.2945 0.0841 2 0 cn-loh 1;5 0.1468 0.3786 0.3876 5 -0.192 10.81 -0.029 -0.0084 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
158 1029_0W2 chr22 23837935 25181759 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 397 81 0.2849 0.2804 0.5846 616.5 0.336 0.1253 5 1 amp 2;4 0.1346 0.3786 0.3556 5 -0.192 18.36 0.0195 -0.0297 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
159 1029_0W2 chr22 25181700 36872464 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 2379 452 0.0564 0.0393 0.6874 385.2 0.7806 0.6319 2 0 cn-loh 1;2;3;4 0.3487 0.3786 0.9211 5 -0.192 36.3 0.0564 0.0194 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
160 1029_0W2 chr22 36875633 36938484 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 110 21 -0.3547 -0.3549 0.6962 4086.0 0.8276 0.6975 1 0 del 1;2;3;4;5 0.3786 0.3786 1.0 5 -0.192 14.06 -0.0519 0.341 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
161 1029_0W2 chr22 36938374 50782316 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 3860 816 -0.0184 -0.0155 0.6938 379.0 0.8084 0.6861 2 0 cn-loh 1;2;3;4;5 0.3786 0.3786 1.0 5 -0.192 49.46 -0.0184 -0.0199 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
162 1029_0W2 chr3 319726 3030971 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 118 23 0.0161 -0.0588 0.5861 184.0 0.3389 0.1309 2 0 cn-loh 1;5 0.1468 0.3786 0.3876 5 -0.192 3.13 0.0161 -0.0066 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
163 1029_0W2 chr3 3030910 15217590 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 2548 333 0.3799 0.3724 0.5797 437.0 0.3184 0.1198 6 2 amp 3;4 0.1539 0.3786 0.4065 5 -0.192 59.51 -0.0072 0.0469 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
164 1029_0W2 chr3 15218426 58097996 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 8754 1232 0.2309 0.2356 0.5842 392.8 0.3372 0.1301 3 1 amp 1;2;3;4 0.3487 0.3786 0.9211 5 -0.192 69.82 -0.001 0.0006 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
165 1029_0W2 chr3 58098679 74521186 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1489 260 0.4749 0.4735 0.5329 430.8 0.1307 0.0242 5 2 amp 1;2;4 0.2515 0.3786 0.6643 5 -0.192 55.9 0.0131 -0.0898 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
166 1029_0W2 chr3 75664359 75666040 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 8 37 0.0405 -0.0306 0.6892 1415.8 0.7787 0.5423 2 0 cn-loh 1;2;3;4;5 0.3786 0.3786 1.0 5 -0.192 10.49 0.0405 -0.0217 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
167 1029_0W2 chr3 75730433 79125557 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 159 29 0.2799 0.42 0.5527 383.0 0.2095 0.0578 6 2 amp 2;5 0.1078 0.3786 0.2848 5 -0.192 10.94 -0.0018 -0.0071 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
168 1029_0W2 chr3 79589808 182918123 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 10633 1741 0.2087 0.2198 0.5824 299.0 0.3292 0.1285 3 1 amp 1;2;3;5 0.3219 0.3786 0.8503 5 -0.192 70.71 -0.0066 0.0074 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
169 1029_0W2 chr3 182938024 189238919 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1928 275 0.3365 0.3559 0.5781 573.7 0.3128 0.11 6 2 amp 2;4 0.1346 0.3786 0.3556 5 -0.192 46.17 -0.0075 0.0687 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
170 1029_0W2 chr3 189310332 198169878 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1300 251 0.0142 0.0259 0.6795 333.0 0.7416 0.5807 2 0 cn-loh 1;2;3;4 0.3487 0.3786 0.9211 5 -0.192 24.98 0.0142 -0.0202 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
171 1029_0W2 chr4 53399 1790240 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 479 76 0.1645 0.1749 0.5713 507.0 0.2833 0.0914 3 1 amp 2;3;4;5 0.2617 0.3786 0.6913 5 -0.192 12.0 -0.0129 0.0192 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
172 1029_0W2 chr4 1791947 1807841 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 91 4 -0.3582 -0.3433 0.5795 2161.0 0.3205 0.1018 1 0 del 1;2;3;5 0.3219 0.3786 0.8503 5 -0.192 10.49 -0.105 -0.0849 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
173 1029_0W2 chr4 1807841 1930824 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 101 0 0.1317 0.1332 4 0 amp 3 0.0972 0.3786 0.2568 5 -0.192 4.03 -0.0022 0.0 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
174 1029_0W2 chr4 1935097 1941656 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 32 0 0.5793 0.8086 6 0 amp 1;3;5 0.244 0.3786 0.6444 5 -0.192 9.98 0.006 0.0 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
175 1029_0W2 chr4 1941776 42414762 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 4008 803 0.2644 0.2629 0.5847 372.0 0.336 0.13 3 1 amp 1;2;3;4;5 0.3786 0.3786 1.0 5 -0.192 54.38 0.0143 -0.0203 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
176 1029_0W2 chr4 42422761 184010775 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 12261 1767 0.1791 0.205 0.5832 241.0 0.3316 0.1297 4 1 amp 1;5 0.1468 0.3786 0.3876 5 -0.192 65.98 -0.0185 0.0272 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
177 1029_0W2 chr4 184010828 190174838 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 795 176 0.3737 0.372 0.5798 381.0 0.3198 0.1162 6 2 amp 3;4 0.1539 0.3786 0.4065 5 -0.192 33.14 -0.0134 0.0446 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
178 1029_0W2 chr5 113220 45696121 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 3931 661 0.4479 0.457 0.5367 389.0 0.1453 0.0318 5 2 amp 2;3;4 0.2319 0.3786 0.6124 5 -0.192 85.73 0.0173 -0.0658 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
179 1029_0W2 chr5 50399805 90506688 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 4142 598 -0.0328 -0.0163 0.685 233.0 0.7663 0.6181 2 0 cn-loh 1;2;3;4 0.3487 0.3786 0.9211 5 -0.192 39.91 -0.0328 -0.0034 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
180 1029_0W2 chr5 90512006 91102340 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 256 25 -0.26 -0.248 0.6867 226.5 0.769 0.6409 1 0 del 1;2;3;4;5 0.3786 0.3786 1.0 5 -0.192 15.05 0.0428 0.2559 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
181 1029_0W2 chr5 91149970 103276531 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 904 107 0.3305 0.3588 0.5641 193.0 0.2481 0.088 6 2 amp 3;5 0.1271 0.3786 0.3357 5 -0.192 30.61 0.0037 -0.003 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
182 1029_0W2 chr5 103550823 141123048 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 4419 579 -0.0079 -0.0195 0.6785 279.5 0.7386 0.5712 2 0 cn-loh 1;2;3;4 0.3487 0.3786 0.9211 5 -0.192 37.43 -0.0079 -0.0288 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
183 1029_0W2 chr5 141123054 141199897 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 106 41 0.0327 0.0701 0.7229 978.0 0.9371 0.8136 2 0 cn-loh 1;2;3;4;5 0.3786 0.3786 1.0 5 -0.192 13.33 0.0327 0.1365 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
184 1029_0W2 chr5 141199932 141588315 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 498 38 0.0898 0.1218 0.6759 826.0 0.7311 0.5494 3 0 amp 1;3;5 0.244 0.3786 0.6444 5 -0.192 11.45 -0.0763 0.0302 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
185 1029_0W2 chr5 141618802 172994889 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 3772 689 0.3034 0.2887 0.7386 370.0 1.0287 1.0856 3 0 amp 1;2;3;4;5 0.3786 0.3786 1.0 5 -0.192 81.27 0.0533 -0.0423 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
186 1029_0W2 chr5 173020195 180601608 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1630 293 0.1992 0.1887 0.7358 432.2 1.0064 1.076 3 0 amp 1;2;3;4 0.3487 0.3786 0.9211 5 -0.192 44.8 -0.0327 0.0279 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
187 1029_0W2 chr5 180601608 180649676 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 121 26 -0.0885 -0.0722 0.7383 2074.0 1.0334 1.0623 2 0 cn-loh 1;2;3;4;5 0.3786 0.3786 1.0 5 -0.192 11.93 -0.0885 0.2228 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
188 1029_0W2 chr5 180739122 181260807 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 146 48 0.2946 0.2684 0.714 747.5 0.9019 0.9129 4 0 amp 1;2;4 0.2515 0.3786 0.6643 5 -0.192 17.42 -0.0291 0.0338 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
189 1029_0W2 chr6 304553 26045567 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 2416 418 0.2854 0.2833 0.7263 350.2 0.9614 0.9984 3 0 amp 1;2;3;4 0.3487 0.3786 0.9211 5 -0.192 60.2 0.0535 -0.0247 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
190 1029_0W2 chr6 26045543 26124628 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 72 26 0.2588 0.1507 0.7227 2136.0 0.9541 0.9487 3 0 amp 1;2;3;4 0.3487 0.3786 0.9211 5 -0.192 12.59 0.0269 -0.0173 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
191 1029_0W2 chr6 26124551 31264825 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1731 362 0.2362 0.2175 0.7231 797.8 0.9473 0.9419 3 0 amp 1;2;3;4 0.3487 0.3786 0.9211 5 -0.192 49.48 0.0043 -0.0263 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
192 1029_0W2 chr6 31266616 31357708 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 60 82 -0.6177 -0.598 0.669 2592.6 0.6925 0.4823 1 0 del 1;2;3;4;5 0.3786 0.3786 1.0 5 -0.192 20.1 -0.3149 0.2122 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
193 1029_0W2 chr6 31362126 31530969 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 45 54 0.2102 0.1531 0.7108 1071.0 0.8952 0.8503 3 0 amp 1;2;3;5 0.3219 0.3786 0.8503 5 -0.192 14.92 -0.0051 -0.0106 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
194 1029_0W2 chr6 31531029 32222839 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1151 103 0.2218 0.2077 0.7104 634.0 0.8801 0.9445 3 0 amp 1;2;3;5 0.3219 0.3786 0.8503 5 -0.192 30.11 0.0065 -0.0199 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
195 1029_0W2 chr6 32222737 33176802 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 550 547 0.1932 0.2007 0.6632 4471.0 0.6659 0.5982 3 0 amp 1;3;5 0.244 0.3786 0.6444 5 -0.192 37.26 0.0271 -0.0114 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
196 1029_0W2 chr6 33176958 47811775 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 4020 705 0.2431 0.2333 0.7337 415.0 1.0039 1.0311 3 0 amp 1;2;3;4 0.3487 0.3786 0.9211 5 -0.192 74.23 0.0112 0.0164 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
197 1029_0W2 chr6 47823940 64307110 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1348 210 0.3519 0.3864 0.63 259.0 0.5265 0.3011 4 1 amp 1;2;3 0.292 0.3786 0.7714 5 -0.192 42.3 -0.0178 0.0226 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
198 1029_0W2 chr6 64388667 134002167 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 7236 953 -0.0586 -0.0439 0.5361 222.5 0.1417 0.031 1 0 del 4;5 0.0866 0.3786 0.2286 5 -0.192 16.42 0.0052 0.0006 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
199 1029_0W2 chr6 134006815 170584636 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 5294 935 0.0797 0.0644 0.5296 389.7 0.117 0.0218 3 1 amp 3 0.0972 0.3786 0.2568 5 -0.192 18.44 0.0112 -0.0147 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
200 1029_0W2 chr7 193154 5741092 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1211 390 0.5237 0.4999 0.6487 681.2 0.6096 0.3876 5 1 amp 1;2;4;5 0.2814 0.3786 0.7432 5 -0.192 61.11 0.0157 -0.0293 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
201 1029_0W2 chr7 5741128 6159561 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 229 75 0.7979 0.7319 0.6655 950.0 0.6816 0.4739 7 2 high-amp 1;2;3;5 0.3219 0.3786 0.8503 5 -0.192 38.91 -0.0539 0.1136 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
202 1029_0W2 chr7 6164887 6826197 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 242 30 0.6848 0.6836 0.648 618.0 0.6001 0.387 7 2 high-amp 2;3;4;5 0.2617 0.3786 0.6913 5 -0.192 33.19 -0.0414 0.0943 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
203 1029_0W2 chr7 7234265 13892398 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 384 58 0.1654 0.1466 0.5641 200.5 0.2537 0.0789 5 1 amp 2 0.078 0.3786 0.2059 5 -0.192 10.44 0.0059 -0.0087 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
204 1029_0W2 chr7 13892398 13977222 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 480 109 0.6184 0.6054 0.5692 3954.5 0.2761 0.0673 5 2 amp 1;2;3;4 0.3487 0.3786 0.9211 5 -0.192 41.71 0.0114 0.0359 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
205 1029_0W2 chr7 13977222 13986222 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 56 44 0.7673 0.6577 0.6108 4032.3 0.4486 0.1962 6 2 amp 1;2;3;4 0.3487 0.3786 0.9211 5 -0.192 18.64 0.0039 0.0213 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
206 1029_0W2 chr7 13986222 34051989 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 2027 378 0.2539 0.2641 0.5668 280.0 0.2653 0.0879 6 2 amp 2;5 0.1078 0.3786 0.2848 5 -0.192 36.1 -0.0278 0.0433 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
207 1029_0W2 chr7 34055118 77311434 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 3873 666 0.5031 0.489 0.5342 447.0 0.135 0.0282 5 2 amp 1;3;4 0.2708 0.3786 0.7152 5 -0.192 95.51 0.0113 -0.0939 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
208 1029_0W2 chr7 77311374 86765550 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 843 105 0.2569 0.2312 0.5352 353.5 0.1382 0.0283 5 2 amp 3;5 0.1271 0.3786 0.3357 5 -0.192 22.82 0.0052 -0.0083 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
209 1029_0W2 chr7 86765493 151971095 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 11138 1700 0.4428 0.4431 0.547 469.5 0.1817 0.0475 5 2 amp 2;3;4 0.2319 0.3786 0.6124 5 -0.192 142.97 0.0122 -0.0207 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
210 1029_0W2 chr7 151982985 159144810 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1006 249 0.6045 0.5705 0.5464 574.0 0.1803 0.0452 5 2 amp 1;2;3;4 0.3487 0.3786 0.9211 5 -0.192 58.63 -0.0025 -0.0771 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
211 1029_0W2 chr8 166190 8797550 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 575 218 0.1416 0.1535 0.5525 351.0 0.2074 0.0614 3 1 amp 1;2 0.1948 0.3786 0.5146 5 -0.192 11.72 0.0075 -0.0098 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
212 1029_0W2 chr8 8890022 32606703 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 3087 717 0.0104 0.0049 0.5382 300.0 0.1516 0.0331 2 0 cn-loh 4 0.0567 0.3786 0.1497 5 -0.192 6.61 0.0104 -0.0065 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
213 1029_0W2 chr8 32606703 32741875 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 797 74 0.3886 0.3392 0.5219 3092.0 0.0869 0.0077 6 3 amp 3;4 0.1539 0.3786 0.4065 5 -0.192 33.43 0.0015 0.0733 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
214 1029_0W2 chr8 32741875 36784606 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 313 68 0.0936 0.0741 0.5287 2336.5 0.1122 0.0136 6 1 amp 5 0.0299 0.3786 0.0789 5 -0.192 5.36 0.0099 -0.0145 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
215 1029_0W2 chr8 36787305 38516549 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 930 48 -0.1259 -0.1396 0.5281 1811.0 0.112 0.02 1 0 del 3;5 0.1271 0.3786 0.3357 5 -0.192 11.78 -0.0312 -0.0422 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
216 1029_0W2 chr8 38528321 43356929 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1015 102 0.0608 0.0482 0.5329 176.5 0.1303 0.0226 3 1 amp 2 0.078 0.3786 0.2059 5 -0.192 6.11 0.0056 -0.0033 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
217 1029_0W2 chr8 47260901 48050005 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 397 20 1.6889 1.66 0.5546 3560.0 0.219 0.051 14 6 high-amp 1;2;3;4;5 0.3786 0.3786 1.0 5 -0.192 102.49 -0.0211 -0.0266 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
218 1029_0W2 chr8 48060622 56010599 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 486 90 0.8543 0.8735 0.8427 587.0 1.6667 2.7907 6 0 amp 1;2;3;4;5 0.3786 0.3786 1.0 5 -0.192 67.03 0.041 0.1074 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
219 1029_0W2 chr8 56010599 56074467 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 30 14 1.0213 1.1368 0.8453 1214.7 1.6943 2.878 7 0 high-amp 1;2;3;4;5 0.3786 0.3786 1.0 5 -0.192 22.01 0.0604 0.0142 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
220 1029_0W2 chr8 56112941 127735667 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 6137 887 0.8559 0.8706 0.8283 397.0 1.5527 2.4555 6 0 amp 1;2;3;4;5 0.3786 0.3786 1.0 5 -0.192 228.02 0.0426 -0.0045 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
221 1029_0W2 chr8 127735578 127749388 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 150 23 0.5623 0.7652 0.835 9047.0 1.6193 2.6742 5 0 amp 1;2;3;4;5 0.3786 0.3786 1.0 5 -0.192 27.12 -0.0865 0.2153 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
222 1029_0W2 chr8 127751786 140735464 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 887 230 0.8666 0.8378 0.8185 537.5 1.4915 2.2462 6 0 amp 1;2;3;4;5 0.3786 0.3786 1.0 5 -0.192 92.94 0.0533 -0.0663 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
223 1029_0W2 chr8 140738972 144511602 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1568 340 0.6323 0.6245 0.8183 837.0 1.4925 2.2488 5 0 amp 1;2;3;4;5 0.3786 0.3786 1.0 5 -0.192 97.36 -0.0165 0.0795 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
224 1029_0W2 chr8 144511675 144516506 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 61 14 0.4296 0.4233 0.8353 7210.0 1.6216 2.6441 5 0 amp 1;2;3;4;5 0.3786 0.3786 1.0 5 -0.192 16.87 -0.2192 0.2164 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
225 1029_0W2 chr8 144516433 145054212 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 230 39 0.7371 0.7075 0.8344 1012.5 1.6057 2.5938 6 0 amp 1;2;3;4;5 0.3786 0.3786 1.0 5 -0.192 40.58 -0.0762 0.054 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
226 1029_0W2 chr9 15056 2033139 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 223 76 0.1306 0.2034 0.6757 338.2 0.7108 0.5764 3 0 amp 1;3;5 0.244 0.3786 0.6444 5 -0.192 14.64 -0.0355 0.0136 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
227 1029_0W2 chr9 2039100 2077830 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 83 24 0.07 0.0958 0.6731 4013.0 0.7205 0.5222 2 0 cn-loh 1;2;3;4 0.3487 0.3786 0.9211 5 -0.192 7.97 0.07 -0.0183 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
228 1029_0W2 chr9 2081798 5450559 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 470 85 0.0181 0.0101 0.6819 251.0 0.756 0.5831 2 0 cn-loh 1;2;3;4 0.3487 0.3786 0.9211 5 -0.192 14.64 0.0181 -0.0158 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
229 1029_0W2 chr9 5450505 5451045 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 9 6 0.2629 0.2385 0.7049 7024.0 0.8695 0.7575 3 0 amp 1;2;3;5 0.3219 0.3786 0.8503 5 -0.192 5.27 0.0476 -0.0243 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
230 1029_0W2 chr9 5450985 5470577 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 76 2 0.2868 0.2104 0.6801 311.0 0.7487 0.5645 5 0 amp 1;5 0.1468 0.3786 0.3876 5 -0.192 7.61 -0.0002 0.0 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
231 1029_0W2 chr9 5494469 5569971 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 174 30 0.2185 0.2579 0.6615 3136.0 0.6679 0.4564 4 0 amp 3;4;5 0.1838 0.3786 0.4854 5 -0.192 11.86 -0.0249 0.0135 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
232 1029_0W2 chr9 5569898 39361809 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 4039 653 -0.0181 -0.01 0.6858 343.0 0.7693 0.6225 2 0 cn-loh 1;2;3;4 0.3487 0.3786 0.9211 5 -0.192 42.04 -0.0181 0.0095 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
233 1029_0W2 chr9 40227161 83978473 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 1865 294 0.2852 0.3184 0.7211 308.0 0.9258 0.9542 4 0 amp 2;3;4;5 0.2617 0.3786 0.6913 5 -0.192 50.94 -0.0502 0.0215 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
234 1029_0W2 chr9 83979243 83980009 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 5 3 -0.014 0.0514 0.7308 9286.0 0.9986 0.997 2 0 cn-loh 1;2;3;4;5 0.3786 0.3786 1.0 5 -0.192 3.81 -0.014 0.1935 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
235 1029_0W2 chr9 83980081 84729524 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 108 12 -0.0403 0.0009 0.7286 520.0 0.985 0.9766 2 0 cn-loh 1;2;3;4;5 0.3786 0.3786 1.0 5 -0.192 7.45 -0.0403 0.1557 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
236 1029_0W2 chr9 84729524 84874446 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 257 20 0.4191 0.3702 0.7227 4423.0 0.9561 0.9225 5 0 amp 2;3;4 0.2319 0.3786 0.6124 5 -0.192 22.52 -0.0115 0.0259 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
237 1029_0W2 chr9 84874446 84923526 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 353 5 0.4771 0.4501 0.7396 3457.0 1.0416 1.1082 5 0 amp 2;3;4;5 0.2617 0.3786 0.6913 5 -0.192 27.77 -0.0007 0.0105 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
238 1029_0W2 chr9 84923526 84927846 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 26 10 0.3138 0.2737 0.7217 2942.5 0.9479 0.9197 4 0 amp 1;3;4 0.2708 0.3786 0.7152 5 -0.192 8.2 -0.0319 0.0278 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
239 1029_0W2 chr9 84927966 90865109 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 618 90 0.222 0.2381 0.7342 463.0 1.0056 1.054 3 0 amp 1;2;3;4 0.3487 0.3786 0.9211 5 -0.192 26.62 -0.0099 0.021 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
240 1029_0W2 chr9 90865013 90897159 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 36 22 0.347 0.2958 0.7198 1828.0 0.9376 0.9091 4 0 amp 1;3;4 0.2708 0.3786 0.7152 5 -0.192 11.54 0.0013 0.0144 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
241 1029_0W2 chr9 90897159 91950008 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 61 13 0.2617 0.3296 0.7395 999.0 1.0406 1.0858 3 0 amp 1;2;3;4;5 0.3786 0.3786 1.0 5 -0.192 10.26 0.0116 -0.0214 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
242 1029_0W2 chr9 92032312 95443066 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 741 112 0.2519 0.2537 0.7315 248.0 0.9865 1.0456 3 0 amp 1;2;3;4 0.3487 0.3786 0.9211 5 -0.192 30.61 0.02 -0.0064 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
243 1029_0W2 chr9 95443066 95476216 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 95 19 0.2259 0.2702 0.7384 3888.0 1.0336 1.0985 3 0 amp 1;2;3;4;5 0.3786 0.3786 1.0 5 -0.192 11.98 -0.0242 -0.0146 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
244 1029_0W2 chr9 95476727 97432238 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 347 89 0.2395 0.2915 0.7438 449.5 1.0528 1.1268 3 0 amp 1;2;3;4;5 0.3786 0.3786 1.0 5 -0.192 25.49 -0.0106 -0.0113 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
245 1029_0W2 chr9 97439201 130878600 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 5725 987 0.2644 0.2653 0.7373 379.0 1.0168 1.0664 3 0 amp 1;2;3;4;5 0.3786 0.3786 1.0 5 -0.192 92.2 0.0143 -0.0485 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
246 1029_0W2 chr9 130878491 130893508 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 50 16 -0.2524 -0.2105 0.7397 6825.0 1.0404 1.1565 2 0 cn-loh 1;2;3;4;5 0.3786 0.3786 1.0 5 -0.192 10.69 -0.2524 0.2379 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
247 1029_0W2 chr9 130893533 132892497 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 652 149 0.3055 0.3114 0.7359 396.5 1.0139 1.0558 4 0 amp 1;2;4;5 0.2814 0.3786 0.7432 5 -0.192 35.75 -0.0522 0.0422 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
248 1029_0W2 chr9 132892497 132895017 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 21 5 0.4771 0.4167 0.7431 14370.0 1.0609 1.0848 5 0 amp 1;3;4 0.2708 0.3786 0.7152 5 -0.192 8.48 -0.0147 0.0059 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
249 1029_0W2 chr9 132895017 133255958 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 217 36 0.2591 0.2341 0.7277 632.0 0.9781 0.9723 3 0 amp 1;2;3;4 0.3487 0.3786 0.9211 5 -0.192 17.21 0.0272 -0.0067 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
250 1029_0W2 chr9 133255881 133332180 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 17 23 0.2033 0.2114 0.7664 1999.0 1.1855 1.4099 3 0 amp 1;2;3;4;5 0.3786 0.3786 1.0 5 -0.192 12.73 -0.0468 0.1307 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
251 1029_0W2 chr9 133332228 134379369 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 355 67 0.2185 0.239 0.7316 413.3 0.9855 0.9878 3 0 amp 1;2;3;4 0.3487 0.3786 0.9211 5 -0.192 21.55 -0.0134 0.0056 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
252 1029_0W2 chr9 134379369 134386436 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 10 6 -0.4413 -0.418 0.7324 10477.5 1.0044 1.0165 1 0 del 1;2;3;4;5 0.3786 0.3786 1.0 5 -0.192 6.9 -0.1385 0.5232 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
253 1029_0W2 chr9 134401577 134438226 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 46 1 -0.128 -0.0984 0.7098 665.0 0.8928 0 0 del 4;5 0.0866 0.3786 0.2286 5 -0.192 2.64 0.0026 0.0 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
254 1029_0W2 chr9 134438226 134439306 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 9 3 -0.2226 -0.2174 0.7406 12472.2 1.0489 1.101 2 0 cn-loh 1;2;3;4;5 0.3786 0.3786 1.0 5 -0.192 4.5 -0.2226 0.2451 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
255 1029_0W2 chr9 134439306 135090388 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 117 60 0.1805 0.1367 0.7308 318.0 0.9841 0.9935 3 0 amp 1;2;3;4 0.3487 0.3786 0.9211 5 -0.192 17.47 -0.0514 -0.004 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
256 1029_0W2 chr9 135095840 136489553 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 507 141 0.1532 0.1638 0.7394 413.2 1.0312 1.0899 3 0 amp 1;2;3;4 0.3487 0.3786 0.9211 5 -0.192 28.5 -0.0787 0.0456 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
257 1029_0W2 chr9 136493834 136494818 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 10 6 -0.0835 -0.1201 0.7269 14735.0 0.9787 0.9585 2 0 cn-loh 1;2;3;4;5 0.3786 0.3786 1.0 5 -0.192 5.36 -0.0835 0.1755 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
258 1029_0W2 chr9 136494736 136497218 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 62 0 -0.186 -0.1129 1 0 del 1;3;5 0.244 0.3786 0.6444 5 -0.192 4.46 0.0017 0.0 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
259 1029_0W2 chr9 136497136 136497338 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 3 2 -0.4963 -0.493 0.7606 10328.0 1.1556 1.3348 0 0 del 1;2;3 0.292 0.3786 0.7714 5 -0.192 2.62 0.002 0.0 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
260 1029_0W2 chr9 136497227 136507157 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 112 10 -0.3175 -0.267 0.746 4957.0 1.076 1.1643 2 0 cn-loh 1;2;3;4;5 0.3786 0.3786 1.0 5 -0.192 12.68 -0.3175 0.2692 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
261 1029_0W2 chr9 136507247 136513546 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 66 0 -0.2674 -0.2479 0 0 del 1;4 0.1736 0.3786 0.4584 5 -0.192 6.61 0.0076 0.0 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
262 1029_0W2 chr9 136513457 136517452 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 38 17 -0.3797 -0.3129 0.7423 4156.5 1.0533 1.0752 2 0 cn-loh 1;2;3;4;5 0.3786 0.3786 1.0 5 -0.192 11.94 -0.3797 0.2487 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
263 1029_0W2 chr9 136517707 136665865 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 79 12 -0.2657 -0.2124 0.724 1832.0 0.9627 0.9376 2 0 cn-loh 1;2;3;4;5 0.3786 0.3786 1.0 5 -0.192 10.23 -0.2657 0.1489 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
264 1029_0W2 chr9 136668182 136837920 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 121 51 0.1109 0.0956 0.7422 447.0 1.0424 1.1267 3 0 amp 1;2;3;4 0.3487 0.3786 0.9211 5 -0.192 16.61 -0.121 0.0617 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
265 1029_0W2 chr9 136837933 138231128 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 919 98 0.135 0.1166 0.7403 346.5 1.0276 1.1114 3 0 amp 1;2;3;4 0.3487 0.3786 0.9211 5 -0.192 25.38 -0.0969 0.0467 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
266 1029_0W2 chrX 2853959 27748025 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 2153 0 -0.4509 -0.4453 3 0 amp 2;3;4 0.2319 0.3786 0.6124 5 -0.192 63.71 -0.6091 0.0 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
267 1029_0W2 chrX 27748040 37011509 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 506 0 -0.7054 -0.7162 5 0 high-amp 4 0.0567 0.3786 0.1497 5 -0.192 48.32 -0.8231 0.0 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
268 1029_0W2 chrX 37042970 111902235 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 8198 0 -0.5441 -0.5562 3 0 amp 3;4;5 0.1838 0.3786 0.4854 5 -0.192 150.01 -0.6709 0.0 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
269 1029_0W2 chrX 111912277 155545278 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 4713 0 -0.2313 -0.2334 5 0 high-amp 2;3 0.1752 0.3786 0.4627 5 -0.192 48.35 -0.5679 0.0 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
270 1029_0W2 chrY 2786997 20779689 1029_0W2-T1-TDNA-1_A23KCGYLT4_1 316 0 -0.9941 -1.0111 1 0 neutral 1 0.1169 0.3786 0.3087 5 -0.192 53.81 -0.9072 0.0 tumor A23KCGYLT4 1029_0W2-T1-TDNA-1_A23KCGYLT4_1
271 rows