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Filename
1029_16G_segments.tsv
Full Path
s3://ai-pipelines-experiment/chnobles/nf-runs/probe-agg-test/somatic/segments/1029_16G_segments.tsv
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47.3 KB
Workflow Run
nf-probe-agg-test
Published
Jun 03, 2026 7:13 AM

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seg_id specimen_id chrom start end tumor_sample_id normal_sample_id n_probes n_het_sites cnlr_median cnlr_wmean mean_mbaf median_het_depth mean_valor mafR tcn lcn call clone_subset clone_purity purity clonal_frac n_clones dipLogR z_score residual_lr residual_lor sample_type
1 1029_16G chr1 69641 3602657 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 1249 246 0.0007 -0.0036 0.553 471.0 0.2233 0.0576 2 0 cn-loh 1 0.0915 0.2854 0.3207 5 -0.376 6.53 0.0007 -0.0075 somatic
2 1029_16G chr1 3611139 11779136 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 2016 210 0.2107 0.202 0.536 516.5 0.1806 0.037 5 2 amp 2;5 0.111 0.2854 0.3888 5 -0.376 29.43 -0.0114 0.0139 somatic
3 1029_16G chr1 11779770 15725582 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 826 133 0.3693 0.4187 0.5449 555.5 0.2158 0.0533 5 2 amp 2;3;4;5 0.1939 0.2854 0.6793 5 -0.376 32.99 0.001 -0.0043 somatic
4 1029_16G chr1 15726999 15931707 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 226 12 0.0956 0.1297 0.5247 767.0 0.076 0.0041 7 2 high-amp 4 0.0295 0.2854 0.1035 5 -0.376 4.47 -0.0072 -0.0125 somatic
5 1029_16G chr1 15931714 15940367 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 171 5 -0.3966 -0.3666 0.5104 13561.0 0.0531 0.0024 0 0 del 1;3;4;5 0.2396 0.2854 0.8393 5 -0.376 16.0 -0.0015 0.0348 somatic
6 1029_16G chr1 15940367 18886547 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 806 243 0.2254 0.2215 0.5478 630.5 0.1197 0.018 6 2 amp 3;4 0.0829 0.2854 0.2905 5 -0.376 20.61 0.004 0.0175 somatic
7 1029_16G chr1 18889347 19219482 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 216 39 0.5828 0.5885 0.5316 544.8 0.1894 0.0356 6 3 amp 1;2;3;5 0.2559 0.2854 0.8965 5 -0.376 26.46 -0.0134 0.0924 somatic
8 1029_16G chr1 19219574 46594239 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 7637 972 0.3617 0.367 0.536 590.0 0.1637 0.0328 5 2 amp 1;4;5 0.1862 0.2854 0.6523 5 -0.376 97.88 0.0064 -0.0344 somatic
9 1029_16G chr1 46609583 110604784 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 7612 831 0.4156 0.4442 0.5326 507.0 0.1678 0.0319 5 2 amp 1;3;5 0.21 0.2854 0.7358 5 -0.376 112.07 0.0205 -0.0649 somatic
10 1029_16G chr1 110673087 224730577 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 17511 2032 0.5322 0.5429 0.5373 691.0 0.1673 0.0337 5 2 amp 1;2;3;4;5 0.2854 0.2854 1.0 5 -0.376 217.68 0.0181 -0.0814 somatic
11 1029_16G chr1 224734539 226632388 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 536 66 0.4525 0.4801 0.5275 696.0 0.1369 0.0165 6 3 amp 1;4;5 0.1862 0.2854 0.6523 5 -0.376 32.36 -0.0042 0.0799 somatic
12 1029_16G chr1 226632388 226737555 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 124 9 -0.1188 -0.1156 0.5189 9471.0 0.1372 0.0253 0 0 del 2;4 0.0754 0.2854 0.2642 5 -0.376 4.11 -0.0057 0.0674 somatic
13 1029_16G chr1 226737555 228274834 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 289 77 0.3346 0.3498 0.5405 729.5 0.2072 0.0405 5 2 amp 1;3;4 0.1744 0.2854 0.6112 5 -0.376 17.77 -0.0007 -0.0057 somatic
14 1029_16G chr1 228275705 228425403 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 264 53 0.0696 0.0857 0.5413 876.0 0.1795 0.0391 5 0 amp 4 0.0295 0.2854 0.1035 5 -0.376 4.23 0.0071 -0.003 somatic
15 1029_16G chr1 228457409 248918363 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 3007 427 0.5252 0.531 0.5563 661.2 0.1765 0.0407 5 2 amp 1;2;3;4;5 0.2854 0.2854 1.0 5 -0.376 89.38 0.0111 -0.0054 somatic
16 1029_16G chr10 47057 37142119 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 3759 548 0.5485 0.5647 0.5415 536.0 0.1878 0.042 5 2 amp 1;2;3;4;5 0.2854 0.2854 1.0 5 -0.376 104.02 0.0344 -0.0686 somatic
17 1029_16G chr10 37142088 43076704 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 164 28 0.3848 0.4159 0.5456 564.5 0.2036 0.0459 5 2 amp 1;2;5 0.2025 0.2854 0.7095 5 -0.376 15.32 0.0021 -0.0063 somatic
18 1029_16G chr10 43077020 43121910 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 128 24 -0.2166 -0.2424 0.5524 5795.0 0.2523 0.0745 1 0 del 1;2;3;4 0.2203 0.2854 0.7719 5 -0.376 7.91 -0.0482 -0.049 somatic
19 1029_16G chr10 43121925 121479412 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 10742 1456 0.3479 0.3663 0.5692 514.0 0.2858 0.0952 6 2 amp 2;4;5 0.1405 0.2854 0.4923 5 -0.376 113.4 -0.0094 0.0231 somatic
20 1029_16G chr10 121479532 121597668 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 354 73 0.2092 0.2124 0.5741 9454.0 0.2794 0.0855 4 1 amp 2;3;5 0.1644 0.2854 0.5758 5 -0.376 13.49 -0.0103 0.0062 somatic
21 1029_16G chr10 121597668 132117361 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 1114 222 0.306 0.3159 0.5831 704.2 0.2721 0.0887 4 1 amp 1;3;5 0.21 0.2854 0.7358 5 -0.376 33.3 0.031 -0.0452 somatic
22 1029_16G chr10 132117445 133240010 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 332 105 -0.1207 -0.1161 0.5952 467.5 0.2832 0.0932 1 0 del 1;3;4;5 0.2396 0.2854 0.8393 5 -0.376 10.83 0.0634 0.0747 somatic
23 1029_16G chr10 133240019 133626762 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 179 32 0.1979 0.2134 0.5942 493.0 0.2527 0.0682 7 0 high-amp 5 0.0651 0.2854 0.2281 5 -0.376 9.38 -0.0197 -0.0517 somatic
24 1029_16G chr11 193064 865577 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 601 134 0.1436 0.1389 0.5604 633.5 0.2461 0.0687 4 1 amp 2;5 0.111 0.2854 0.3888 5 -0.376 12.3 -0.0082 0.0106 somatic
25 1029_16G chr11 865503 1471477 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 528 172 -0.2176 -0.2026 0.5731 562.5 0.1586 0.0312 1 0 del 1;2;3;5 0.2559 0.2854 0.8965 5 -0.376 17.42 -0.0201 -0.0347 somatic
26 1029_16G chr11 1480716 2929364 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 351 52 -0.0005 0.018 0.5787 384.2 0.197 0.0401 2 0 cn-loh 1;2 0.1374 0.2854 0.4814 5 -0.376 4.72 -0.0005 0.0002 somatic
27 1029_16G chr11 2949152 62981436 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 8856 1204 0.4404 0.454 0.5471 776.0 0.1759 0.0366 5 2 amp 1;3;4;5 0.2396 0.2854 0.8393 5 -0.376 128.56 -0.0025 -0.0164 somatic
28 1029_16G chr11 62981832 74161560 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 4200 417 0.3446 0.3335 0.5374 666.0 0.1639 0.0305 5 2 amp 1;3;4 0.1744 0.2854 0.6112 5 -0.376 69.15 0.0093 -0.0195 somatic
29 1029_16G chr11 74168352 134387716 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 8607 1198 0.5613 0.5839 0.6151 643.0 0.4808 0.2598 6 2 amp 1;2;3;5 0.2559 0.2854 0.8965 5 -0.376 164.62 -0.0349 0.0955 somatic
30 1029_16G chr12 66830 11267474 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 3023 473 0.3482 0.3655 0.5678 613.0 0.271 0.0902 6 2 amp 2;4;5 0.1405 0.2854 0.4923 5 -0.376 60.35 -0.0091 0.0204 somatic
31 1029_16G chr12 11267599 11819038 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 522 80 0.6611 0.6594 0.5712 13430.0 0.232 0.0565 6 2 amp 1;2;3;4;5 0.2854 0.2854 1.0 5 -0.376 46.98 0.0096 -0.0876 somatic
32 1029_16G chr12 11819038 15217516 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 942 67 0.5364 0.5335 0.5722 1484.0 0.2645 0.078 6 2 amp 1;2;3;4 0.2203 0.2854 0.7719 5 -0.376 51.07 0.0097 -0.0381 somatic
33 1029_16G chr12 15483919 47967296 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 3696 538 0.3266 0.3675 0.558 423.0 0.2639 0.0828 6 2 amp 2;3;4 0.1288 0.2854 0.4512 5 -0.376 62.19 -0.004 -0.0113 somatic
34 1029_16G chr12 47968125 49025310 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 569 104 0.2159 0.1979 0.5843 757.0 0.262 0.0884 4 1 amp 1;3;4 0.1744 0.2854 0.6112 5 -0.376 17.58 -0.0161 0.0122 somatic
35 1029_16G chr12 49026138 49055338 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 562 3 -0.4693 -0.4513 0.5768 11263.0 0.3051 0.0946 0 0 del 1;2;3;4;5 0.2854 0.2854 1.0 5 -0.376 34.35 0.0155 0.3021 somatic
36 1029_16G chr12 49055254 57091438 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 3634 365 0.3163 0.3201 0.5667 677.0 0.2771 0.0923 6 2 amp 2;3;4 0.1288 0.2854 0.4512 5 -0.376 59.81 -0.0143 0.0322 somatic
37 1029_16G chr12 57091363 57096403 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 54 6 -0.068 -0.097 0.5592 13258.5 0.2762 0.0812 1 0 del 1;5 0.1566 0.2854 0.5488 5 -0.376 2.04 0.0497 0.0606 somatic
38 1029_16G chr12 57096403 57731658 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 785 35 0.1452 0.136 0.5722 980.0 0.2634 0.0697 6 0 amp 3 0.0534 0.2854 0.187 5 -0.376 13.09 -0.0011 -0.0261 somatic
39 1029_16G chr12 57731755 110614469 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 6286 709 0.3472 0.3796 0.5653 440.0 0.2784 0.0943 6 2 amp 1;2 0.1374 0.2854 0.4814 5 -0.376 86.11 -0.003 0.0083 somatic
40 1029_16G chr12 110619780 113010533 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 802 42 0.2599 0.2594 0.5918 724.5 0.3136 0.1121 6 1 amp 2;3 0.0992 0.2854 0.3477 5 -0.376 23.31 -0.0013 0.0075 somatic
41 1029_16G chr12 113056717 113098032 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 116 0 -0.3241 -0.2987 0 0 del 1;2;5 0.2025 0.2854 0.7095 5 -0.376 10.77 0.0024 0.0 somatic
42 1029_16G chr12 113099885 113952643 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 233 11 0.223 0.2417 0.5899 454.0 0.2979 0.0798 5 1 amp 3;5 0.1185 0.2854 0.4152 5 -0.376 10.81 -0.013 0.0219 somatic
43 1029_16G chr12 113955105 120725961 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 955 141 0.3558 0.3559 0.5652 578.0 0.254 0.0759 6 2 amp 2;4;5 0.1405 0.2854 0.4923 5 -0.376 34.53 -0.0015 0.0088 somatic
44 1029_16G chr12 120727003 121002562 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 95 31 -0.0389 -0.0118 0.5501 2946.0 0.2493 0.0659 2 0 cn-loh 1 0.0915 0.2854 0.3207 5 -0.376 2.72 -0.0389 0.0028 somatic
45 1029_16G chr12 121004148 121808375 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 241 48 0.3017 0.2806 0.5583 451.0 0.2693 0.0785 6 2 amp 3;5 0.1185 0.2854 0.4152 5 -0.376 14.81 -0.0051 0.0045 somatic
46 1029_16G chr12 121809560 122059548 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 278 20 -0.1841 -0.2159 0.5773 994.5 0.2708 0.084 1 0 del 1;3;4;5 0.2396 0.2854 0.8393 5 -0.376 9.94 -0.0 0.0125 somatic
47 1029_16G chr12 122059548 132139328 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 1708 271 0.2114 0.228 0.5751 477.5 0.2952 0.0995 4 1 amp 1;5 0.1566 0.2854 0.5488 5 -0.376 28.88 0.0015 -0.0064 somatic
48 1029_16G chr12 132139640 132677498 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 275 79 -0.0637 -0.0647 0.5686 1588.0 0.2675 0.0793 2 0 cn-loh 2;3;4 0.1288 0.2854 0.4512 5 -0.376 6.29 -0.0637 -0.0029 somatic
49 1029_16G chr12 132677529 133234376 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 246 77 0.142 0.1908 0.571 467.0 0.3101 0.117 7 0 high-amp 2 0.0459 0.2854 0.1607 5 -0.376 8.6 -0.0146 -0.041 somatic
50 1029_16G chr13 19173833 29519607 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 1645 197 0.2709 0.2685 0.5637 644.0 0.2728 0.0817 6 2 amp 2;5 0.111 0.2854 0.3888 5 -0.376 34.71 -0.0183 0.0426 somatic
51 1029_16G chr13 29522278 109756122 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 5581 682 0.3821 0.4229 0.5717 453.0 0.2864 0.0957 6 2 amp 1;5 0.1566 0.2854 0.5488 5 -0.376 89.43 -0.0111 0.0116 somatic
52 1029_16G chr13 109756122 109786233 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 60 2 -0.0971 -0.1882 0.5573 6020.0 0.277 0.0746 0 0 del 5 0.0651 0.2854 0.2281 5 -0.376 2.32 0.0 0.0 somatic
53 1029_16G chr13 109786233 112871795 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 393 145 0.4373 0.416 0.5658 419.3 0.331 0.1238 6 2 amp 1;3;4 0.1744 0.2854 0.6112 5 -0.376 27.51 0.0055 -0.0343 somatic
54 1029_16G chr13 112871722 114326203 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 517 130 0.1207 0.1361 0.5591 392.0 0.3281 0.1272 5 1 amp 5 0.0651 0.2854 0.2281 5 -0.376 10.0 -0.0138 0.0188 somatic
55 1029_16G chr14 18601119 62802581 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 5476 574 0.5263 0.5591 0.5485 618.0 0.1998 0.0447 5 2 amp 1;2;3;4;5 0.2854 0.2854 1.0 5 -0.376 120.52 0.0122 -0.038 somatic
56 1029_16G chr14 62849649 67593952 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 820 71 0.32 0.3507 0.5645 567.0 0.3372 0.1248 6 2 amp 2;3;4 0.1288 0.2854 0.4512 5 -0.376 28.63 -0.0106 0.0204 somatic
57 1029_16G chr14 67599985 93706907 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 3431 516 0.5176 0.5255 0.537 475.0 0.1962 0.0487 5 2 amp 1;2;3;4;5 0.2854 0.2854 1.0 5 -0.376 93.74 0.0035 -0.0889 somatic
58 1029_16G chr14 93721435 102830523 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 1485 210 0.261 0.2715 0.5712 527.0 0.291 0.1018 4 1 amp 1;3;4 0.1744 0.2854 0.6112 5 -0.376 32.21 0.029 -0.0473 somatic
59 1029_16G chr14 102870136 104085871 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 516 49 0.0519 0.0688 0.5658 378.0 0.3238 0.1112 3 0 amp 2;4 0.0754 0.2854 0.2642 5 -0.376 5.19 -0.0015 0.0049 somatic
60 1029_16G chr14 104092573 105604986 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 622 104 -0.2026 -0.2141 0.5891 512.0 0.2959 0.0949 1 0 del 1;2;3;4;5 0.2854 0.2854 1.0 5 -0.376 17.45 0.0195 -0.0111 somatic
61 1029_16G chr14 105626098 105745752 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 116 61 -0.5687 -0.5445 0.5901 5636.8 0.2391 0.0566 0 0 del 1;2;3;4;5 0.2854 0.2854 1.0 5 -0.376 20.0 -0.0839 0.3538 somatic
62 1029_16G chr14 105745692 105775678 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 118 43 -0.9407 -0.9741 0.5893 5764.0 0.2404 0.0752 0 0 del 1;2;3;4;5 0.2854 0.2854 1.0 5 -0.376 32.0 -0.4559 0.3506 somatic
63 1029_16G chr14 105851733 105940161 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 167 19 -0.3767 -0.3906 0.5701 1130.2 0.2019 0.0629 1 0 del 1;2;3;4;5 0.2854 0.2854 1.0 5 -0.376 15.26 -0.1546 -0.0775 somatic
64 1029_16G chr14 105986636 106874851 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 194 31 0.2916 0.3267 0.5987 3687.0 0.2871 0.0879 4 1 amp 1;2;4;5 0.232 0.2854 0.813 5 -0.376 13.53 -0.0094 0.0057 somatic
65 1029_16G chr15 20535569 24679397 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 278 39 0.2013 0.2316 0.5864 774.0 0.2992 0.0994 4 1 amp 1;2;4 0.1669 0.2854 0.5848 5 -0.376 11.39 -0.0214 0.0324 somatic
66 1029_16G chr15 24954995 31002464 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 707 54 0.3457 0.379 0.5728 757.0 0.2722 0.0796 6 2 amp 2;4;5 0.1405 0.2854 0.4923 5 -0.376 28.73 -0.0116 0.044 somatic
67 1029_16G chr15 31002445 41045110 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 1730 239 0.4994 0.5135 0.5434 667.5 0.1582 0.0319 5 2 amp 1;2;3;5 0.2559 0.2854 0.8965 5 -0.376 64.31 0.0307 -0.0423 somatic
68 1029_16G chr15 41047362 43558964 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 1787 209 0.3188 0.3278 0.5453 558.0 0.2149 0.047 5 2 amp 1;2;4 0.1669 0.2854 0.5848 5 -0.376 41.89 -0.0036 0.0142 somatic
69 1029_16G chr15 43564091 73301393 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 5191 470 0.4512 0.478 0.5388 414.0 0.181 0.0434 5 2 amp 1;3;4;5 0.2396 0.2854 0.8393 5 -0.376 100.49 0.0083 -0.0604 somatic
70 1029_16G chr15 73301328 79293404 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 1561 205 0.3119 0.3158 0.546 475.0 0.1911 0.0446 5 2 amp 2;3;5 0.1644 0.2854 0.5758 5 -0.376 38.35 -0.006 0.0159 somatic
71 1029_16G chr15 79293976 87861056 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 1002 172 0.4563 0.4708 0.5573 422.0 0.2755 0.087 5 2 amp 1;2;3;5 0.2559 0.2854 0.8965 5 -0.376 44.96 -0.0124 0.0059 somatic
72 1029_16G chr15 87861056 88106650 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 1441 137 0.2878 0.2716 0.5833 8983.0 0.2981 0.0942 4 1 amp 1;3;5 0.21 0.2854 0.7358 5 -0.376 34.91 0.0128 -0.0228 somatic
73 1029_16G chr15 88107490 88125370 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 135 57 0.2749 0.2494 0.5915 12817.0 0.3238 0.1084 5 1 amp 2;4;5 0.1405 0.2854 0.4923 5 -0.376 11.8 -0.001 0.0114 somatic
74 1029_16G chr15 88125370 90091659 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 799 112 0.2282 0.2349 0.5659 500.0 0.2987 0.1021 7 2 high-amp 2;4 0.0754 0.2854 0.2642 5 -0.376 20.71 -0.0209 0.0386 somatic
75 1029_16G chr15 90099068 101819015 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 1446 281 0.3593 0.374 0.5774 630.0 0.2862 0.0893 6 2 amp 3;4;5 0.148 0.2854 0.5186 5 -0.376 43.6 -0.0148 0.0509 somatic
76 1029_16G chr16 47432 2063081 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 1516 196 0.0002 -0.0033 0.5747 530.0 0.2574 0.0829 2 0 cn-loh 2;3;4 0.1288 0.2854 0.4512 5 -0.376 8.82 0.0002 0.0074 somatic
77 1029_16G chr16 2064236 2189637 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 335 8 -0.3232 -0.3555 0.5399 473.0 0.1414 0.0115 0 0 del 1;2;5 0.2025 0.2854 0.7095 5 -0.376 18.27 0.0033 0.1233 somatic
78 1029_16G chr16 2190043 3579188 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 792 75 0.1716 0.1802 0.5818 685.0 0.17 0.0305 7 0 high-amp 3 0.0534 0.2854 0.187 5 -0.376 16.11 -0.0091 -0.033 somatic
79 1029_16G chr16 3582286 3851063 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 479 35 -0.0818 -0.1036 0.5168 4913.0 0.0986 0.0115 1 0 del 3;4 0.0829 0.2854 0.2905 5 -0.376 5.58 -0.0207 -0.0307 somatic
80 1029_16G chr16 3862047 11253747 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 1140 122 0.2518 0.2389 0.5286 601.5 0.1139 0.0159 5 2 amp 1;4 0.1211 0.2854 0.4242 5 -0.376 26.32 0.0111 -0.0206 somatic
81 1029_16G chr16 11254385 11255585 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 28 0 -0.2415 -0.2078 0 0 del 1;5 0.1566 0.2854 0.5488 5 -0.376 3.94 0.0043 0.0 somatic
82 1029_16G chr16 11255585 81101329 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 10515 1161 0.3584 0.3569 0.5404 585.5 0.1745 0.0377 5 2 amp 1;4;5 0.1862 0.2854 0.6523 5 -0.376 113.88 0.0031 -0.0168 somatic
83 1029_16G chr16 81108536 88076687 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 1110 342 0.3077 0.2909 0.5384 628.0 0.1932 0.0442 5 2 amp 1;5 0.1566 0.2854 0.5488 5 -0.376 32.08 0.0032 -0.0049 somatic
84 1029_16G chr16 88427470 89305408 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 647 98 0.0271 -0.0022 0.55 588.0 0.2238 0.0639 3 0 amp 3 0.0534 0.2854 0.187 5 -0.376 4.46 -0.0109 0.0115 somatic
85 1029_16G chr16 89312544 90075935 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 511 62 0.2121 0.1825 0.5541 660.0 0.209 0.0559 6 2 amp 3;4 0.0829 0.2854 0.2905 5 -0.376 15.19 -0.0093 0.0437 somatic
86 1029_16G chr17 137555 17207332 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 5792 962 0.2207 0.2219 0.5572 580.0 0.2596 0.0807 6 2 amp 1 0.0915 0.2854 0.3207 5 -0.376 53.8 -0.0218 0.0416 somatic
87 1029_16G chr17 17212201 19962959 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 984 156 0.0812 0.083 0.5474 638.0 0.1764 0.0383 6 0 amp 4 0.0295 0.2854 0.1035 5 -0.376 9.15 -0.0016 -0.0091 somatic
88 1029_16G chr17 19962908 38870297 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 3413 435 0.3163 0.317 0.5695 643.5 0.2391 0.0712 6 2 amp 2;3;4 0.1288 0.2854 0.4512 5 -0.376 58.32 -0.0143 0.0428 somatic
89 1029_16G chr17 38878028 40413680 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 1167 102 0.1571 0.1544 0.5759 588.5 0.3232 0.1188 6 0 amp 3 0.0534 0.2854 0.187 5 -0.376 17.8 0.0108 -0.0184 somatic
90 1029_16G chr17 40415958 41379472 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 496 73 0.6278 0.5994 0.5798 860.5 0.218 0.0496 6 2 amp 1;2;3;5 0.2559 0.2854 0.8965 5 -0.376 43.55 0.0316 -0.0471 somatic
91 1029_16G chr17 41379540 42337895 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 822 122 0.185 0.176 0.5712 828.7 0.3149 0.1077 5 1 amp 4;5 0.0947 0.2854 0.3316 5 -0.376 17.71 -0.0065 0.0091 somatic
92 1029_16G chr17 42338681 43028522 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 563 31 0.3514 0.3491 0.6163 922.0 0.4759 0.234 5 1 amp 1;4;5 0.1862 0.2854 0.6523 5 -0.376 26.39 -0.0039 0.0038 somatic
93 1029_16G chr17 43028576 43526279 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 361 75 0.4332 0.4196 0.5957 2440.5 0.474 0.2333 6 2 amp 1;2;3 0.1908 0.2854 0.6684 5 -0.376 26.51 -0.0331 0.0935 somatic
94 1029_16G chr17 43526446 43545081 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 120 5 0.0313 -0.001 0.6189 10805.0 0.5094 0.2595 2 0 cn-loh 1;2;4;5 0.232 0.2854 0.813 5 -0.376 2.74 0.0313 0.0045 somatic
95 1029_16G chr17 43545260 73257886 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 6591 598 0.3858 0.4043 0.6064 606.0 0.4206 0.1934 5 1 amp 1;4;5 0.1862 0.2854 0.6523 5 -0.376 99.37 0.0305 -0.044 somatic
96 1029_16G chr17 73260901 80883997 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 2699 511 0.2769 0.2804 0.5951 615.0 0.3945 0.1783 5 1 amp 2;4;5 0.1405 0.2854 0.4923 5 -0.376 48.23 0.001 0.0012 somatic
97 1029_16G chr17 80884958 82095510 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 807 124 0.0423 0.0435 0.6011 579.0 0.3823 0.1676 2 0 cn-loh 1;4;5 0.1862 0.2854 0.6523 5 -0.376 10.59 0.0423 0.0001 somatic
98 1029_16G chr17 82096319 83094575 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 303 59 0.2922 0.2653 0.5973 470.0 0.4026 0.193 4 1 amp 1;2;3;4 0.2203 0.2854 0.7719 5 -0.376 16.98 0.005 -0.0076 somatic
99 1029_16G chr18 47389 80247372 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 7001 917 0.3658 0.3834 0.5667 485.0 0.2737 0.0827 6 2 amp 1;3 0.1449 0.2854 0.5077 5 -0.376 95.89 -0.0014 0.0065 somatic
100 1029_16G chr19 110681 5274420 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 2995 684 0.1127 0.0853 0.5367 449.5 0.1657 0.0353 5 1 amp 2 0.0459 0.2854 0.1607 5 -0.376 20.2 0.0167 -0.0195 somatic
101 1029_16G chr19 5286034 38900254 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 10905 1666 0.2345 0.2127 0.532 617.5 0.122 0.0199 5 2 amp 3;5 0.1185 0.2854 0.4152 5 -0.376 76.13 -0.0015 -0.0046 somatic
102 1029_16G chr19 38905006 39168331 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 78 19 0.0563 0.0418 0.5858 435.0 0.4142 0.1818 3 0 amp 2;3 0.0992 0.2854 0.3477 5 -0.376 3.53 -0.0136 0.0228 somatic
103 1029_16G chr19 39168613 39199277 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 69 4 -0.4206 -0.4442 0.5389 401.0 0.3003 0.0678 0 0 del 1;2;3;4;5 0.2854 0.2854 1.0 5 -0.376 10.79 0.0642 0.1161 somatic
104 1029_16G chr19 39200297 58571441 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 8974 1437 0.1497 0.1403 0.5773 519.5 0.3017 0.1087 6 0 amp 3 0.0534 0.2854 0.187 5 -0.376 50.29 0.0034 -0.0147 somatic
105 1029_16G chr2 41522 48964016 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 7138 804 0.3453 0.3463 0.5345 571.0 0.1528 0.0261 5 2 amp 1;3;4 0.1744 0.2854 0.6112 5 -0.376 90.29 0.01 -0.0337 somatic
106 1029_16G chr2 48968697 143042200 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 11493 1478 0.4525 0.4687 0.5382 655.5 0.1366 0.0259 5 2 amp 1;3;4;5 0.2396 0.2854 0.8393 5 -0.376 150.09 0.0096 -0.0548 somatic
107 1029_16G chr2 143155467 218090066 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 10168 1020 0.51 0.5382 0.533 601.0 0.158 0.034 6 3 amp 1;3;5 0.21 0.2854 0.7358 5 -0.376 158.86 0.0041 0.0996 somatic
108 1029_16G chr2 218134744 219419040 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 815 43 0.4329 0.4265 0.528 841.0 0.1645 0.0199 6 3 amp 1;3;4 0.1744 0.2854 0.6112 5 -0.376 38.16 0.0011 0.0846 somatic
109 1029_16G chr2 219420064 219641770 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 336 8 0.2743 0.2208 0.5298 458.0 0.1351 0.0141 5 2 amp 1;2 0.1374 0.2854 0.4814 5 -0.376 15.52 0.004 -0.032 somatic
110 1029_16G chr2 221426025 238082241 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 2619 415 0.4684 0.4659 0.5395 590.0 0.1512 0.0296 5 2 amp 1;2;3;5 0.2559 0.2854 0.8965 5 -0.376 74.21 -0.0003 -0.06 somatic
111 1029_16G chr2 238083195 241811491 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 1058 197 0.2604 0.2681 0.5396 459.0 0.111 0.0179 5 2 amp 1;2 0.1374 0.2854 0.4814 5 -0.376 26.44 -0.0099 0.0075 somatic
112 1029_16G chr2 241814402 241873273 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 73 5 -0.1656 -0.1497 0.5014 2037.0 0.0349 0.0 0 0 del 2;5 0.111 0.2854 0.3888 5 -0.376 4.37 0.0041 0.0 somatic
113 1029_16G chr20 87677 2652946 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 477 119 0.4631 0.4472 0.5554 541.0 0.2745 0.0792 5 2 amp 1;2;3;5 0.2559 0.2854 0.8965 5 -0.376 31.58 -0.0056 0.0028 somatic
114 1029_16G chr20 2653227 3784983 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 522 47 0.148 0.1525 0.5756 369.4 0.3213 0.1322 6 0 amp 3 0.0534 0.2854 0.187 5 -0.376 11.27 0.0017 -0.0282 somatic
115 1029_16G chr20 3785036 9390639 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 498 116 0.3702 0.3865 0.5556 564.5 0.3289 0.1318 6 2 amp 2;4;5 0.1405 0.2854 0.4923 5 -0.376 25.94 0.0129 -0.0305 somatic
116 1029_16G chr20 9393555 62200794 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 7681 930 0.4559 0.4557 0.5296 664.0 0.1395 0.026 6 3 amp 1;4;5 0.1862 0.2854 0.6523 5 -0.376 123.45 -0.0008 0.0876 somatic
117 1029_16G chr20 62200824 64273595 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 1065 197 0.0984 0.1013 0.5364 594.7 0.1886 0.0408 4 1 amp 5 0.0651 0.2854 0.2281 5 -0.376 10.6 0.0074 -0.0093 somatic
118 1029_16G chr21 5117108 41445597 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 2644 350 0.5497 0.5734 0.5464 606.0 0.192 0.0417 5 2 amp 1;2;3;4;5 0.2854 0.2854 1.0 5 -0.376 87.48 0.0356 -0.0468 somatic
119 1029_16G chr21 41445972 41531171 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 281 47 0.2213 0.123 0.5147 4363.5 0.084 0.0098 6 3 amp 3;4 0.0829 0.2854 0.2905 5 -0.376 11.47 -0.0001 0.0467 somatic
120 1029_16G chr21 41740840 44107485 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 630 134 0.4609 0.4737 0.5376 473.0 0.2031 0.042 5 2 amp 1;3;4;5 0.2396 0.2854 0.8393 5 -0.376 35.83 0.018 -0.0627 somatic
121 1029_16G chr21 44114568 46484893 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 967 222 0.1867 0.2083 0.542 513.0 0.1711 0.036 6 2 amp 2;4 0.0754 0.2854 0.2642 5 -0.376 18.52 -0.0159 0.002 somatic
122 1029_16G chr21 46490599 46664423 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 80 7 0.599 0.6689 0.54 478.0 0.1552 0.0121 6 3 amp 1;2;3;5 0.2559 0.2854 0.8965 5 -0.376 16.55 0.0028 0.1238 somatic
123 1029_16G chr22 15528158 19516908 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 610 109 0.3006 0.3136 0.5536 609.5 0.2315 0.06 6 2 amp 3;5 0.1185 0.2854 0.4152 5 -0.376 23.35 -0.0062 -0.0093 somatic
124 1029_16G chr22 19518830 22885518 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 1272 213 0.206 0.1785 0.5428 718.0 0.1084 0.0179 6 2 amp 2;4 0.0754 0.2854 0.2642 5 -0.376 23.19 0.0034 0.0106 somatic
125 1029_16G chr22 22885458 23838660 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 745 90 -0.0263 -0.0175 0.5498 4164.0 0.1263 0.0246 2 0 cn-loh 4;5 0.0947 0.2854 0.3316 5 -0.376 4.75 -0.0263 -0.0024 somatic
126 1029_16G chr22 23838646 31798692 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 2156 343 0.2298 0.2264 0.5749 678.0 0.3212 0.1216 4 1 amp 2;3;5 0.1644 0.2854 0.5758 5 -0.376 35.0 0.0103 -0.013 somatic
127 1029_16G chr22 31802709 36877865 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 622 140 0.3839 0.3782 0.583 632.5 0.2802 0.0904 6 2 amp 2;3;5 0.1644 0.2854 0.5758 5 -0.376 30.74 -0.0261 0.0547 somatic
128 1029_16G chr22 36922089 36936667 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 73 17 -0.2194 -0.1353 0.557 3153.0 0.2194 0.0506 1 0 del 1;2;4;5 0.232 0.2854 0.813 5 -0.376 6.15 -0.0415 -0.0492 somatic
129 1029_16G chr22 36937334 36938547 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 35 2 -0.7316 -0.7249 0.5775 11147.0 0.336 0.1118 0 0 del 1;2;3;4;5 0.2854 0.2854 1.0 5 -0.376 13.36 -0.2468 0.0 somatic
130 1029_16G chr22 36938534 39862007 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 1089 144 0.1709 0.1596 0.5724 555.0 0.2781 0.097 5 1 amp 1 0.0915 0.2854 0.3207 5 -0.376 18.88 -0.0147 0.0152 somatic
131 1029_16G chr22 39887399 41094675 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 247 38 0.3647 0.3914 0.563 735.0 0.3431 0.1354 6 2 amp 1;3 0.1449 0.2854 0.5077 5 -0.376 17.98 -0.0025 -0.0017 somatic
132 1029_16G chr22 41117136 50782316 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 2521 400 0.08 0.0894 0.572 547.0 0.3082 0.1091 4 0 amp 5 0.0651 0.2854 0.2281 5 -0.376 17.32 -0.011 0.0101 somatic
133 1029_16G chr3 319726 12292976 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 1400 270 0.3976 0.4168 0.5773 645.5 0.2267 0.0638 6 2 amp 2;3;5 0.1644 0.2854 0.5758 5 -0.376 47.18 -0.0124 0.0316 somatic
134 1029_16G chr3 12292976 12378416 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 516 116 0.7285 0.6812 0.5627 8411.0 0.2666 0.0732 7 3 high-amp 1;2;3;4;5 0.2854 0.2854 1.0 5 -0.376 51.44 -0.0485 0.0765 somatic
135 1029_16G chr3 12378416 12734823 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 262 16 0.384 0.3989 0.5708 7405.0 0.2645 0.0721 6 2 amp 1;5 0.1566 0.2854 0.5488 5 -0.376 19.36 -0.0092 0.0361 somatic
136 1029_16G chr3 12735506 46689434 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 4496 666 0.3423 0.3632 0.5684 533.0 0.2987 0.1058 6 2 amp 1;2 0.1374 0.2854 0.4814 5 -0.376 72.33 -0.0079 0.0244 somatic
137 1029_16G chr3 46701473 49652233 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 1754 88 0.1287 0.1375 0.5767 518.0 0.2904 0.1049 6 0 amp 2 0.0459 0.2854 0.1607 5 -0.376 17.71 0.0021 0.0208 somatic
138 1029_16G chr3 49652304 50275752 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 643 48 0.0091 -0.0066 0.5682 808.5 0.3173 0.1097 2 0 cn-loh 1;4 0.1211 0.2854 0.4242 5 -0.376 4.1 0.0091 0.0031 somatic
139 1029_16G chr3 50275768 52292583 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 658 32 0.32 0.2996 0.5752 579.0 0.3289 0.1239 6 2 amp 2;3;4 0.1288 0.2854 0.4512 5 -0.376 25.58 -0.0106 0.0644 somatic
140 1029_16G chr3 52292635 52833797 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 766 10 0.0656 0.1085 0.5722 658.5 0.3057 0.1007 3 0 amp 1 0.0915 0.2854 0.3207 5 -0.376 5.93 0.001 -0.0044 somatic
141 1029_16G chr3 52834892 120909768 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 5476 669 0.398 0.4333 0.5782 580.8 0.2517 0.0806 6 2 amp 2;3;5 0.1644 0.2854 0.5758 5 -0.376 92.5 -0.012 0.0336 somatic
142 1029_16G chr3 120954893 142838963 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 4419 539 0.3114 0.314 0.5692 578.0 0.2888 0.097 6 2 amp 2;3;4 0.1288 0.2854 0.4512 5 -0.376 65.28 -0.0192 0.0399 somatic
143 1029_16G chr3 142842932 198169878 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 6547 720 0.3553 0.3936 0.5632 554.5 0.2803 0.0934 6 2 amp 2;4;5 0.1405 0.2854 0.4923 5 -0.376 89.8 -0.002 0.0 somatic
144 1029_16G chr4 53399 530554 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 63 6 0.4169 0.4955 0.5456 904.0 0.1734 0.0513 5 2 amp 1;2;3;4 0.2203 0.2854 0.7719 5 -0.376 10.25 0.005 -0.0096 somatic
145 1029_16G chr4 530616 1792067 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 417 123 0.1578 0.1618 0.5419 622.0 0.1518 0.0224 6 2 amp 5 0.0651 0.2854 0.2281 5 -0.376 10.56 -0.0188 0.0206 somatic
146 1029_16G chr4 1793263 1807841 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 90 2 -0.4951 -0.5051 0.5668 980.0 0.175 0.0333 0 0 del 1;2;3;4;5 0.2854 0.2854 1.0 5 -0.376 14.49 -0.0103 0.0 somatic
147 1029_16G chr4 1807841 1935307 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 107 0 -0.0226 0.0431 1 0 del 4 0.0295 0.2854 0.1035 5 -0.376 0.72 -0.0011 0.0 somatic
148 1029_16G chr4 1938392 1948496 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 79 1 0.5509 0.6549 0.5204 12166.0 0.0905 6 0 amp 1;2;4;5 0.232 0.2854 0.813 5 -0.376 15.11 0.0009 0.0 somatic
149 1029_16G chr4 1948496 2512522 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 297 25 0.1801 0.1619 0.535 435.0 0.205 0.0503 6 2 amp 5 0.0651 0.2854 0.2281 5 -0.376 9.65 0.0035 -0.0134 somatic
150 1029_16G chr4 2512491 10542355 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 1358 287 0.4071 0.4002 0.5395 576.8 0.2183 0.0572 5 2 amp 1;3;5 0.21 0.2854 0.7358 5 -0.376 46.56 0.012 -0.0349 somatic
151 1029_16G chr4 10558368 53573873 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 3150 359 0.5492 0.5959 0.5329 523.0 0.1507 0.0301 6 3 amp 1;2;4;5 0.232 0.2854 0.813 5 -0.376 95.21 -0.0008 0.0969 somatic
152 1029_16G chr4 53573887 70158456 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 1543 199 0.3988 0.4116 0.5279 703.5 0.1125 0.0237 5 2 amp 1;2;5 0.2025 0.2854 0.7095 5 -0.376 48.41 0.0161 -0.074 somatic
153 1029_16G chr4 70158487 190174838 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 10663 1291 0.4842 0.5226 0.5382 558.5 0.1732 0.0361 5 2 amp 1;2;3;5 0.2559 0.2854 0.8965 5 -0.376 154.61 0.0155 -0.0661 somatic
154 1029_16G chr5 113220 473420 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 193 24 0.6963 0.7041 0.5415 657.0 0.117 0.0105 6 3 amp 1;2;3;4;5 0.2854 0.2854 1.0 5 -0.376 29.89 0.0448 0.1353 somatic
155 1029_16G chr5 474881 1882697 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 414 89 0.3397 0.3011 0.5318 590.0 0.155 0.026 5 2 amp 1;3;4 0.1744 0.2854 0.6112 5 -0.376 21.43 0.0044 -0.044 somatic
156 1029_16G chr5 2747526 50795258 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 3359 345 0.6891 0.7093 0.5518 714.0 0.2238 0.0602 6 3 amp 1;2;3;4;5 0.2854 0.2854 1.0 5 -0.376 123.48 0.0376 0.1781 somatic
157 1029_16G chr5 50795293 69115356 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 1707 252 0.3477 0.367 0.5515 468.0 0.2153 0.0648 5 2 amp 1;4;5 0.1862 0.2854 0.6523 5 -0.376 44.78 -0.0076 0.0241 somatic
158 1029_16G chr5 69115320 83258689 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 2094 233 0.2198 0.2621 0.5475 412.0 0.2422 0.0764 6 2 amp 3;4 0.0829 0.2854 0.2905 5 -0.376 31.51 -0.0016 0.0088 somatic
159 1029_16G chr5 83310735 176529121 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 10540 1143 0.4196 0.4353 0.5759 609.0 0.32 0.1181 6 2 amp 1;3;4 0.1744 0.2854 0.6112 5 -0.376 134.71 -0.0122 0.0135 somatic
160 1029_16G chr5 176529276 177090582 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 219 39 0.0955 0.0837 0.5656 745.0 0.2988 0.0979 4 0 amp 5 0.0651 0.2854 0.2281 5 -0.376 5.57 0.0045 -0.0111 somatic
161 1029_16G chr5 177090547 177098196 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 54 3 -0.2607 -0.3241 0.5748 4059.0 0.255 0.0737 1 0 del 1;2;3;4;5 0.2854 0.2854 1.0 5 -0.376 6.03 -0.0386 -0.0471 somatic
162 1029_16G chr5 177098593 180590860 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 1076 110 0.2595 0.235 0.5805 476.5 0.3725 0.1675 6 1 amp 1 0.0915 0.2854 0.3207 5 -0.376 27.22 0.017 -0.0237 somatic
163 1029_16G chr5 180591380 180739499 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 126 3 -0.3366 -0.3179 0.5682 1880.0 0.052 0.0009 1 0 del 1;2;3;4;5 0.2854 0.2854 1.0 5 -0.376 11.71 -0.1145 -0.08 somatic
164 1029_16G chr5 180739589 181260807 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 143 13 0.4341 0.4256 0.5743 777.8 0.3309 0.142 6 2 amp 1;3;4 0.1744 0.2854 0.6112 5 -0.376 16.18 0.0023 0.0107 somatic
165 1029_16G chr6 304553 24798721 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 2128 293 0.3983 0.4139 0.5655 630.0 0.2726 0.0893 6 2 amp 1;5 0.1566 0.2854 0.5488 5 -0.376 57.46 0.0051 -0.008 somatic
166 1029_16G chr6 24798664 28996220 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 1066 110 0.5424 0.5848 0.5625 819.0 0.2254 0.0617 5 2 amp 1;2;3;4;5 0.2854 0.2854 1.0 5 -0.376 54.92 0.0283 0.0229 somatic
167 1029_16G chr6 28996231 29723008 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 190 60 0.3139 0.3958 0.5625 914.0 0.2908 0.0883 6 2 amp 2;3;4 0.1288 0.2854 0.4512 5 -0.376 13.97 -0.0167 0.0194 somatic
168 1029_16G chr6 29723297 29950768 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 151 161 0.0363 -0.0162 0.5453 9907.0 0.2343 0.0631 3 0 amp 3 0.0534 0.2854 0.187 5 -0.376 5.39 -0.0017 0.0174 somatic
169 1029_16G chr6 30061482 31269105 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 690 164 0.39 0.3875 0.5764 964.5 0.2717 0.0864 6 2 amp 2;3;5 0.1644 0.2854 0.5758 5 -0.376 32.75 -0.02 0.0337 somatic
170 1029_16G chr6 31269045 31507311 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 88 58 0.0752 -0.0619 0.5788 2440.0 0.2504 0.0739 3 0 amp 2;5 0.111 0.2854 0.3888 5 -0.376 5.85 -0.0027 -0.0164 somatic
171 1029_16G chr6 31507363 32196451 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 1046 25 0.3507 0.3478 0.5613 954.5 0.1752 0.0328 6 2 amp 1;2 0.1374 0.2854 0.4814 5 -0.376 35.09 0.0005 0.0042 somatic
172 1029_16G chr6 32196854 32370030 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 166 70 0.0365 0.0927 0.564 2417.0 0.2836 0.086 3 0 amp 3;4 0.0829 0.2854 0.2905 5 -0.376 4.99 -0.0221 0.0012 somatic
173 1029_16G chr6 32393924 32857388 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 230 226 0.5753 0.6436 0.5822 3951.0 0.2473 0.0781 6 2 amp 1;3;4;5 0.2396 0.2854 0.8393 5 -0.376 29.21 0.0106 -0.0077 somatic
174 1029_16G chr6 32857966 33435346 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 575 47 0.4348 0.4521 0.5642 1051.0 0.2177 0.0498 6 2 amp 1;3;4 0.1744 0.2854 0.6112 5 -0.376 32.39 0.003 -0.0265 somatic
175 1029_16G chr6 33435464 44404018 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 3269 443 0.2913 0.2851 0.569 571.0 0.297 0.1025 6 2 amp 3;5 0.1185 0.2854 0.4152 5 -0.376 52.81 -0.0155 0.0522 somatic
176 1029_16G chr6 44406265 111376813 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 6292 687 0.3566 0.3991 0.5648 511.0 0.2784 0.0964 6 2 amp 2;4;5 0.1405 0.2854 0.4923 5 -0.376 88.39 -0.0007 0.0051 somatic
177 1029_16G chr6 111377672 170584636 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 8032 1134 0.4375 0.4478 0.5723 719.0 0.2837 0.0912 6 2 amp 1;3;4 0.1744 0.2854 0.6112 5 -0.376 122.76 0.0057 0.0014 somatic
178 1029_16G chr7 193154 5605387 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 1186 229 0.1804 0.1564 0.535 545.0 0.1629 0.0282 6 2 amp 5 0.0651 0.2854 0.2281 5 -0.376 19.54 0.0038 -0.0093 somatic
179 1029_16G chr7 5605383 6792041 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 474 71 0.3786 0.3776 0.5399 797.0 0.1283 0.0179 5 2 amp 2;3;4;5 0.1939 0.2854 0.6793 5 -0.376 25.57 0.0103 -0.0188 somatic
180 1029_16G chr7 6796653 43877970 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 3811 599 0.5984 0.6101 0.5331 625.8 0.1203 0.0211 6 3 amp 1;2;3;5 0.2559 0.2854 0.8965 5 -0.376 114.14 0.0022 0.1007 somatic
181 1029_16G chr7 43878038 45662229 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 489 52 0.3303 0.3283 0.5325 604.5 0.1741 0.0375 5 2 amp 1;2;4 0.1669 0.2854 0.5848 5 -0.376 22.6 0.0079 -0.036 somatic
182 1029_16G chr7 45664268 55165856 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 772 136 0.5715 0.5703 0.5237 759.5 0.143 0.0259 6 3 amp 1;3;4;5 0.2396 0.2854 0.8393 5 -0.376 49.03 0.0068 0.0659 somatic
183 1029_16G chr7 55166216 55205672 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 286 4 0.1766 0.0933 0.6691 5761.0 0.1487 0.0256 3 0 amp 1;2;3;5 0.2559 0.2854 0.8965 5 -0.376 9.78 0.0029 -0.0152 somatic
184 1029_16G chr7 55205672 80674175 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 1860 238 0.4079 0.4025 0.5366 662.0 0.1539 0.0307 5 2 amp 1;3;5 0.21 0.2854 0.7358 5 -0.376 54.45 0.0128 -0.0444 somatic
185 1029_16G chr7 80744899 100626853 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 3173 318 0.5085 0.5369 0.5279 634.5 0.1439 0.0294 6 3 amp 1;3;5 0.21 0.2854 0.7358 5 -0.376 88.45 0.0026 0.08 somatic
186 1029_16G chr7 100626838 103304100 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 1111 245 0.2284 0.2262 0.5539 917.5 0.1253 0.0185 6 2 amp 1 0.0915 0.2854 0.3207 5 -0.376 24.52 -0.0141 0.0351 somatic
187 1029_16G chr7 103304356 121873578 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 1988 129 0.5706 0.5956 0.5231 590.5 0.1049 0.0128 6 3 amp 1;3;4;5 0.2396 0.2854 0.8393 5 -0.376 78.52 0.0059 0.0596 somatic
188 1029_16G chr7 121967940 159144810 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 6339 888 0.4925 0.5004 0.5391 707.0 0.1469 0.0264 5 2 amp 1;2;3;5 0.2559 0.2854 0.8965 5 -0.376 121.32 0.0238 -0.0587 somatic
189 1029_16G chr8 166190 32607063 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 3660 634 0.3503 0.3628 0.5721 581.0 0.3056 0.1037 6 2 amp 2;4;5 0.1405 0.2854 0.4923 5 -0.376 67.16 -0.007 0.0371 somatic
190 1029_16G chr8 32607063 36817806 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 1121 54 0.6356 0.5905 0.5586 7289.0 0.2451 0.0644 6 2 amp 1;2;3;5 0.2559 0.2854 0.8965 5 -0.376 65.78 0.0394 -0.1157 somatic
191 1029_16G chr8 36833499 37844671 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 206 7 -0.0752 -0.0678 0.539 1903.0 0.2243 0.0547 1 0 del 3;5 0.1185 0.2854 0.4152 5 -0.376 3.44 0.0129 0.0119 somatic
192 1029_16G chr8 37844671 38412642 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 363 11 0.3725 0.3868 0.5833 359.5 0.3676 0.1589 6 2 amp 1;5 0.1566 0.2854 0.5488 5 -0.376 22.02 -0.0207 0.0546 somatic
193 1029_16G chr8 38412642 38516549 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 347 15 -0.066 -0.1043 0.5763 7792.0 0.2433 0.0596 2 0 cn-loh 3;4;5 0.148 0.2854 0.5186 5 -0.376 4.68 -0.066 0.0003 somatic
194 1029_16G chr8 38528321 39821190 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 227 41 0.2741 0.3679 0.5554 348.8 0.3375 0.1299 6 2 amp 2;5 0.111 0.2854 0.3888 5 -0.376 13.03 -0.0151 -0.0023 somatic
195 1029_16G chr8 39821534 141422350 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 9019 1042 0.4744 0.4902 0.5363 610.7 0.1513 0.0321 5 2 amp 1;2;3;5 0.2559 0.2854 0.8965 5 -0.376 139.28 0.0057 -0.0723 somatic
196 1029_16G chr8 141425033 145054212 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 1715 328 0.1118 0.1053 0.5304 706.0 0.1384 0.023 6 2 amp 2 0.0459 0.2854 0.1607 5 -0.376 14.82 -0.0148 0.0077 somatic
197 1029_16G chr9 15056 21969828 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 2597 315 0.4632 0.484 0.5703 781.5 0.283 0.0913 6 2 amp 1;4;5 0.1862 0.2854 0.6523 5 -0.376 73.61 0.0065 -0.0185 somatic
198 1029_16G chr9 21970760 39086874 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 2412 284 0.3453 0.3542 0.5436 673.0 0.2047 0.0632 5 2 amp 1;4;5 0.1862 0.2854 0.6523 5 -0.376 52.64 -0.01 -0.0017 somatic
199 1029_16G chr9 39088425 87731121 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 3059 248 0.5157 0.5324 0.5442 624.5 0.1461 0.028 5 2 amp 1;2;3;4;5 0.2854 0.2854 1.0 5 -0.376 88.18 0.0016 -0.0552 somatic
200 1029_16G chr9 87882839 88132373 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 80 13 0.0915 0.0753 0.5749 987.5 0.153 0.0244 4 0 amp 2;4 0.0754 0.2854 0.2642 5 -0.376 3.45 -0.0134 -0.0058 somatic
201 1029_16G chr9 88132432 122519753 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 4751 598 0.4466 0.4645 0.5448 621.0 0.1842 0.0463 5 2 amp 1;3;4;5 0.2396 0.2854 0.8393 5 -0.376 95.37 0.0037 -0.029 somatic
202 1029_16G chr9 122519806 128611903 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 1530 138 0.2555 0.2747 0.5791 552.5 0.2932 0.0993 5 1 amp 1;4 0.1211 0.2854 0.4242 5 -0.376 31.84 0.0148 -0.0247 somatic
203 1029_16G chr9 128612083 130880702 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 889 100 0.1499 0.1354 0.5719 331.2 0.3285 0.1247 7 1 high-amp 2 0.0459 0.2854 0.1607 5 -0.376 14.96 -0.0067 0.0393 somatic
204 1029_16G chr9 130883917 130885564 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 23 0 -0.5291 -0.5225 0 0 del 1;2;3;4;5 0.2854 0.2854 1.0 5 -0.376 7.83 -0.0443 0.0 somatic
205 1029_16G chr9 130885522 131009426 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 37 15 -0.1754 -0.1817 0.5698 665.0 0.2846 0.0823 1 0 del 1;2;3;4 0.2203 0.2854 0.7719 5 -0.376 4.01 -0.007 0.0012 somatic
206 1029_16G chr9 131009468 132892497 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 635 83 0.234 0.2628 0.5775 666.0 0.2992 0.1005 4 1 amp 1;2;4 0.1669 0.2854 0.5848 5 -0.376 19.18 0.0113 -0.0065 somatic
207 1029_16G chr9 132892497 133051025 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 159 37 0.3597 0.3456 0.57 2779.2 0.3055 0.0973 6 2 amp 3;4;5 0.148 0.2854 0.5186 5 -0.376 14.51 -0.0144 0.0373 somatic
208 1029_16G chr9 133052002 133776113 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 365 56 0.1111 0.1099 0.5699 394.0 0.3224 0.1142 5 0 amp 3 0.0534 0.2854 0.187 5 -0.376 7.82 -0.0 -0.0071 somatic
209 1029_16G chr9 133777378 136493954 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 776 154 -0.0454 -0.0389 0.5796 362.0 0.3506 0.1396 2 0 cn-loh 1;2 0.1374 0.2854 0.4814 5 -0.376 9.07 -0.0454 0.0027 somatic
210 1029_16G chr9 136494376 136524030 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 341 38 -0.8157 -0.7639 0.5679 3888.0 0.266 0.0756 0 0 del 1;2;3;4;5 0.2854 0.2854 1.0 5 -0.376 46.63 -0.3309 0.2605 somatic
211 1029_16G chr9 136529043 137065715 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 486 98 -0.1142 -0.121 0.5762 704.0 0.3003 0.1017 1 0 del 1;2;5 0.2025 0.2854 0.7095 5 -0.376 10.12 0.0398 0.0508 somatic
212 1029_16G chr9 137066257 138231128 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 582 33 0.0488 0.0371 0.572 390.0 0.3499 0.1262 3 0 amp 3;4 0.0829 0.2854 0.2905 5 -0.376 4.97 -0.0098 0.0096 somatic
213 1029_16G chrX 2853959 17750293 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 1146 0 -0.4574 -0.4473 6 0 high-amp 1 0.0915 0.2854 0.3207 5 -0.376 47.78 -0.6999 0.0 somatic
214 1029_16G chrX 17751784 71460715 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 6639 18 -0.6074 -0.6092 0.6167 1266.5 0.2323 0.079 3 0 amp 1;5 0.1566 0.2854 0.5488 5 -0.376 152.78 -0.7162 0.0102 somatic
215 1029_16G chrX 71460611 152869126 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 6517 11 -0.4899 -0.4776 0.6539 1609.0 0.1486 0.0278 4 0 amp 2;4;5 0.1405 0.2854 0.4923 5 -0.376 122.13 -0.6796 0.1132 somatic
216 1029_16G chrX 152914709 153919311 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 479 0 -0.7851 -0.797 4 0 amp 3 0.0534 0.2854 0.187 5 -0.376 53.02 -0.8601 0.0 somatic
217 1029_16G chrX 153919566 154563722 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 543 10 -0.5468 -0.5805 0.6239 1549.5 0.172 0.0244 5 0 high-amp 1 0.0915 0.2854 0.3207 5 -0.376 39.48 -0.7324 0.0779 somatic
218 1029_16G chrX 154563929 155545278 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 246 0 -0.3107 -0.3231 4 0 amp 1;2;5 0.2025 0.2854 0.7095 5 -0.376 15.04 -0.5767 0.0 somatic
219 1029_16G chrY 2786997 20779689 1029_16G-T1-TDNA-1_B23KFCWLT4_1 1029_16G-N1-BDNA-1_B23KGCJLT4_1 316 0 -0.7328 -0.6887 2 0 amp 1;2;5 0.2025 0.2854 0.7095 5 -0.376 40.19 -0.7328 0.0 somatic
220 rows