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1029_11H_segments.tsv
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s3://ai-pipelines-experiment/chnobles/nf-runs/probe-agg-test/somatic/segments/1029_11H_segments.tsv
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nf-probe-agg-test
Published
Jun 03, 2026 7:13 AM

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seg_id specimen_id chrom start end tumor_sample_id normal_sample_id n_probes n_het_sites cnlr_median cnlr_wmean mean_mbaf median_het_depth mean_valor mafR tcn lcn call clone_subset clone_purity purity clonal_frac n_clones dipLogR z_score residual_lr residual_lor sample_type
1 1029_11H chr1 69641 24459012 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 6912 1067 -0.7525 -0.7469 0.831 611.0 1.5998 2.9209 1 0 del 1;2;3 0.782 0.8773 0.8914 5 0.258 217.67 -0.037 0.0371 somatic
2 1029_11H chr1 24460452 65430062 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 8937 977 -0.726 -0.7257 0.851 478.0 1.7293 3.1391 1 0 del 1;2;3;4 0.817 0.8773 0.9313 5 0.258 236.76 0.0316 0.0075 somatic
3 1029_11H chr1 65431769 103664520 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 3905 375 -0.8685 -0.8766 0.8474 266.0 1.7396 3.094 1 0 del 1;2;3;4 0.817 0.8773 0.9313 5 0.258 180.35 -0.1109 -0.0331 somatic
4 1029_11H chr1 103692405 109203021 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 421 67 0.0378 -0.0205 0.5478 547.0 0.1931 0.0406 3 0 amp 5 0.0603 0.8773 0.0687 5 0.258 3.41 -0.0051 -0.0184 somatic
5 1029_11H chr1 109214001 115768594 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 1622 158 -0.7436 -0.746 0.8541 544.0 1.7573 3.1724 1 0 del 1;2;3;4 0.817 0.8773 0.9313 5 0.258 102.19 0.014 0.0344 somatic
6 1029_11H chr1 115837963 248918363 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 20695 2510 0.0331 0.0143 0.5318 793.0 0.1436 0.0249 3 0 amp 4 0.035 0.8773 0.0399 5 0.258 17.53 0.0081 -0.0043 somatic
7 1029_11H chr10 47057 133240334 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 16595 2393 0.0487 0.0362 0.5306 722.8 0.1302 0.0243 4 1 amp 4 0.035 0.8773 0.0399 5 0.258 21.39 -0.001 0.0252 somatic
8 1029_11H chr10 133263134 133626762 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 177 5 -0.7131 -0.6968 0.6678 909.5 0.4552 0.0998 1 0 del 1;3;4;5 0.6012 0.8773 0.6853 5 0.258 29.88 -0.1972 -0.2476 somatic
9 1029_11H chr11 193064 1445941 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 1108 183 -0.0357 -0.0409 0.7883 1153.8 1.268 4.1846 2 0 cn-loh 1;3;5 0.5662 0.8773 0.6454 5 0.258 32.53 -0.0357 0.0073 somatic
10 1029_11H chr11 1449745 1881679 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 121 61 -0.0801 -0.0537 0.834 1380.0 1.8294 4.5986 2 0 cn-loh 2;3 0.661 0.8773 0.7534 5 0.258 23.18 -0.0801 0.0036 somatic
11 1029_11H chr11 1883372 11352063 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 2476 466 0.0379 0.0454 0.9151 1006.0 2.3678 5.6653 2 0 cn-loh 1;2;3;4 0.817 0.8773 0.9313 5 0.258 94.13 0.0379 0.0567 somatic
12 1029_11H chr11 11352115 44310116 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 3011 480 0.5229 0.5038 0.6409 914.0 0.5933 0.3768 4 1 amp 3;4 0.4199 0.8773 0.4786 5 0.258 92.73 0.0171 -0.0568 somatic
13 1029_11H chr11 44594631 44935011 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 23 15 0.0981 0.0626 0.925 1399.5 2.5475 6.4932 2 0 cn-loh 1;2;3;5 0.8423 0.8773 0.9601 5 0.258 17.91 0.0981 0.0327 somatic
14 1029_11H chr11 44934948 48264141 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 1066 125 0.0876 0.0805 0.9155 937.5 2.3856 5.7311 2 0 cn-loh 1;2;3;4 0.817 0.8773 0.9313 5 0.258 49.56 0.0876 0.061 somatic
15 1029_11H chr11 48264175 50033242 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 129 47 -0.3386 -0.3331 0.9061 930.8 2.2949 5.4308 2 0 cn-loh 1;2;3;4 0.817 0.8773 0.9313 5 0.258 30.87 -0.3386 -0.0549 somatic
16 1029_11H chr11 50033410 57816357 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 647 161 -0.3824 -0.3609 0.5966 1155.5 0.3175 0.1386 1 0 del 3 0.3849 0.8773 0.4387 5 0.258 31.7 -0.074 -0.1181 somatic
17 1029_11H chr11 58030895 117905746 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 11334 1178 -0.7322 -0.7339 0.5411 496.8 0.1898 0.056 0 0 del 1;2 0.3971 0.8773 0.4526 5 0.258 244.59 -0.0022 0.129 somatic
18 1029_11H chr11 117908396 119728573 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 1169 101 -0.3296 -0.3532 0.6033 578.0 0.4272 0.2089 1 0 del 2;4;5 0.3714 0.8773 0.4233 5 0.258 36.06 -0.0332 -0.0782 somatic
19 1029_11H chr11 120112384 134387716 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 2059 279 -0.6908 -0.6805 0.539 478.5 0.2127 0.053 0 0 del 3 0.3849 0.8773 0.4387 5 0.258 98.37 0.0103 0.1198 somatic
20 1029_11H chr12 66830 5647854 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 1155 155 -0.2104 -0.2094 0.6117 611.0 0.4359 0.2419 1 0 del 2;4 0.3111 0.8773 0.3546 5 0.258 24.44 0.0335 0.0495 somatic
21 1029_11H chr12 5732484 7795089 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 1120 97 0.0697 0.0691 0.5438 1093.0 0.1694 0.0413 5 0 amp 4 0.035 0.8773 0.0399 5 0.258 7.82 -0.0042 -0.0152 somatic
22 1029_11H chr12 7814316 11650218 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 773 153 -0.4247 -0.4072 0.6251 671.0 0.4615 0.2488 1 0 del 3;5 0.4452 0.8773 0.5075 5 0.258 38.63 -0.0614 -0.1087 somatic
23 1029_11H chr12 11662938 12722028 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 1111 122 -0.2096 -0.2192 0.626 9647.5 0.5141 0.2694 1 0 del 2;5 0.3364 0.8773 0.3834 5 0.258 24.23 0.0561 0.0969 somatic
24 1029_11H chr12 12722028 19343462 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 717 79 -0.1483 -0.1321 0.5527 621.5 0.216 0.0509 1 0 del 1;5 0.1813 0.8773 0.2067 5 0.258 12.8 -0.0112 -0.0205 somatic
25 1029_11H chr12 19345774 34026573 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 1865 267 0.3465 0.4058 0.6261 612.5 0.557 0.3514 3 1 amp 1;3;5 0.5662 0.8773 0.6454 5 0.258 49.15 -0.0132 0.0346 somatic
26 1029_11H chr12 34026789 39294530 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 57 5 -0.8941 -0.9845 0.8755 284.0 1.8283 3.4489 1 0 del 1;2;3;5 0.8423 0.8773 0.9601 5 0.258 22.59 -0.1053 0.0559 somatic
27 1029_11H chr12 39301476 39363215 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 69 0 0.161 0.2464 6 0 amp 5 0.0603 0.8773 0.0687 5 0.258 4.19 -0.0033 0.0 somatic
28 1029_11H chr12 39366338 49030473 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 1954 356 -0.8104 -0.8101 0.8537 321.5 1.7548 3.2108 1 0 del 1;2;3;4 0.817 0.8773 0.9313 5 0.258 127.37 -0.0528 0.0209 somatic
29 1029_11H chr12 49030379 49060804 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 507 0 -1.0799 -1.0968 0 0 del 1;3;4 0.5409 0.8773 0.6166 5 0.258 76.25 0.0434 0.0 somatic
30 1029_11H chr12 49065086 51916267 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 1123 74 -0.6832 -0.6862 0.8046 544.0 1.5537 2.6799 1 0 del 2;3;4;5 0.7563 0.8773 0.8621 5 0.258 75.09 0.0022 -0.0308 somatic
31 1029_11H chr12 51918992 52601286 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 368 151 -0.7167 -0.7124 0.8291 921.0 1.6653 2.8743 1 0 del 1;2;3 0.782 0.8773 0.8914 5 0.258 55.72 -0.0012 0.0296 somatic
32 1029_11H chr12 52601340 57623865 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 2845 187 -0.6984 -0.7055 0.8547 677.0 1.7998 3.2861 1 0 del 1;2;3;4 0.817 0.8773 0.9313 5 0.258 124.85 0.0592 0.0428 somatic
33 1029_11H chr12 57623815 57633246 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 83 15 -0.8841 -0.9326 0.8607 4849.0 1.815 3.3155 1 0 del 1;2;3;5 0.8423 0.8773 0.9601 5 0.258 28.39 -0.0953 -0.0376 somatic
34 1029_11H chr12 57694103 64610747 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 640 84 -0.7401 -0.7546 0.8408 301.0 1.6847 2.9023 1 0 del 1;2;3;4 0.817 0.8773 0.9313 5 0.258 64.81 0.0175 -0.0803 somatic
35 1029_11H chr12 64684739 133234376 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 10635 1338 -0.0259 -0.0398 0.5348 680.0 0.1645 0.0369 2 0 cn-loh 5 0.0603 0.8773 0.0687 5 0.258 11.15 -0.0259 -0.0119 somatic
36 1029_11H chr13 19173833 29440119 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 1622 178 0.4723 0.4496 0.6468 968.2 0.6144 0.3888 3 1 amp 1;2;3 0.782 0.8773 0.8914 5 0.258 61.34 -0.0038 0.0016 somatic
37 1029_11H chr13 29480145 40663120 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 1462 165 0.0247 0.0246 0.5351 535.0 0.1606 0.0306 3 0 amp 4 0.035 0.8773 0.0399 5 0.258 3.89 -0.0003 0.0028 somatic
38 1029_11H chr13 40665540 101711366 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 3622 431 -0.7704 -0.7754 0.8204 274.0 1.6555 2.8759 1 0 del 1;2;3 0.782 0.8773 0.8914 5 0.258 155.99 -0.0549 -0.0525 somatic
39 1029_11H chr13 101711366 110307084 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 661 108 -0.8372 -0.8347 0.8486 663.5 1.6922 2.8805 1 0 del 1;2;3;4 0.817 0.8773 0.9313 5 0.258 74.93 -0.0796 -0.0058 somatic
40 1029_11H chr13 110307857 114326203 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 829 112 -0.631 -0.6616 0.8342 489.0 1.6569 3.0566 1 0 del 1;2;3 0.782 0.8773 0.8914 5 0.258 64.83 0.0845 0.0562 somatic
41 1029_11H chr14 18601119 21234193 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 522 114 0.1123 0.1286 0.5542 1113.0 0.131 0.0248 7 1 high-amp 4 0.035 0.8773 0.0399 5 0.258 8.91 -0.0088 0.0324 somatic
42 1029_11H chr14 21287938 22836931 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 319 28 -0.6904 -0.6944 0.8487 481.0 1.6943 2.9495 1 0 del 1;2;3;4 0.817 0.8773 0.9313 5 0.258 42.05 0.0672 -0.0104 somatic
43 1029_11H chr14 22841441 23645372 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 627 90 0.0785 0.0878 0.5292 1058.5 0.1374 0.0256 5 1 amp 4 0.035 0.8773 0.0399 5 0.258 6.37 0.0046 -0.0075 somatic
44 1029_11H chr14 23953787 26597427 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 633 90 -0.6665 -0.6458 0.8558 537.5 1.8279 3.4035 1 0 del 1;2;3;4 0.817 0.8773 0.9313 5 0.258 60.87 0.0911 0.0479 somatic
45 1029_11H chr14 28767239 39432163 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 1193 139 -0.0993 -0.123 0.5315 429.5 0.1288 0.041 1 0 del 1 0.121 0.8773 0.1379 5 0.258 10.92 -0.0093 -0.0413 somatic
46 1029_11H chr14 41886575 49577878 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 368 6 -0.665 -0.7026 0.5739 208.0 0.2904 0.1093 0 0 del 2;4;5 0.3714 0.8773 0.4233 5 0.258 40.02 0.0048 0.2425 somatic
47 1029_11H chr14 49583561 53093470 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 747 96 0.0608 0.0812 0.5715 455.0 0.3319 0.1029 3 0 amp 4;5 0.0953 0.8773 0.1086 5 0.258 6.91 -0.0064 -0.0241 somatic
48 1029_11H chr14 53102981 63727944 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 1137 151 0.4595 0.4856 0.6507 544.5 0.6295 0.4272 4 1 amp 3 0.3849 0.8773 0.4387 5 0.258 50.39 -0.0103 0.017 somatic
49 1029_11H chr14 63940554 68411535 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 920 43 0.061 0.045 0.9113 750.0 2.3507 5.5271 2 0 cn-loh 1;2;3;4 0.817 0.8773 0.9313 5 0.258 28.5 0.061 0.0048 somatic
50 1029_11H chr14 68411416 68729893 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 37 16 0.0708 0.0566 0.8888 1128.5 2.1119 4.7024 2 0 cn-loh 1;2;3 0.782 0.8773 0.8914 5 0.258 15.26 0.0708 -0.0463 somatic
51 1029_11H chr14 68729893 68792112 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 39 0 -0.8724 -0.8811 0 0 del 1;2;5 0.4574 0.8773 0.5214 5 0.258 17.09 0.0097 0.0 somatic
52 1029_11H chr14 68792052 68793012 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 16 8 -0.9744 -0.9702 0.8706 10221.5 1.8918 3.6252 1 0 del 1;2;3;4;5 0.8773 0.8773 1.0 5 0.258 15.75 -0.1413 -0.2 somatic
53 1029_11H chr14 68792952 70329304 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 237 27 -0.6425 -0.669 0.8589 584.0 1.8057 3.4996 1 0 del 1;2;3;4 0.817 0.8773 0.9313 5 0.258 35.39 0.1151 0.0747 somatic
54 1029_11H chr14 70342615 78278720 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 1596 260 0.1122 0.0971 0.5294 600.5 0.1627 0.0338 7 2 high-amp 4 0.035 0.8773 0.0399 5 0.258 14.28 -0.0089 -0.0115 somatic
55 1029_11H chr14 78297786 81145883 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 185 21 0.3699 0.4064 0.6509 10743.0 0.6618 0.4406 7 0 high-amp 1 0.121 0.8773 0.1379 5 0.258 16.62 -0.0114 -0.0596 somatic
56 1029_11H chr14 81145883 103338830 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 2881 353 0.572 0.5585 0.6452 837.5 0.606 0.3945 4 1 amp 1;2;5 0.4574 0.8773 0.5214 5 0.258 98.3 0.0286 -0.0792 somatic
57 1029_11H chr14 103338791 105646487 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 927 212 0.822 0.7982 0.559 2201.0 0.0799 0.0083 5 2 amp 1;3 0.5059 0.8773 0.5767 5 0.258 78.71 0.0073 -0.0696 somatic
58 1029_11H chr14 105646427 106005526 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 375 38 0.2155 0.1928 0.5849 16081.5 0.4088 0.2645 3 1 amp 2;5 0.3364 0.8773 0.3834 5 0.258 13.64 -0.0088 0.0467 somatic
59 1029_11H chr14 106037826 106874851 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 186 7 0.7881 0.8323 0.5579 6016.0 0.1281 0.0182 5 2 amp 3;4;5 0.4802 0.8773 0.5474 5 0.258 33.72 0.0054 -0.0586 somatic
60 1029_11H chr15 20535569 24978495 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 292 40 -0.315 -0.2774 0.6264 1136.2 0.4696 0.2631 1 0 del 3 0.3849 0.8773 0.4387 5 0.258 17.84 -0.0066 0.0071 somatic
61 1029_11H chr15 25339112 32718083 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 875 111 -0.6575 -0.6476 0.8305 524.8 1.5848 2.8822 1 0 del 1;2;3 0.782 0.8773 0.8914 5 0.258 68.1 0.058 0.031 somatic
62 1029_11H chr15 32718083 32798957 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 78 18 -0.6202 -0.6882 0.859 8036.0 1.8236 3.3322 1 0 del 1;2;3;4 0.817 0.8773 0.9313 5 0.258 22.23 0.1374 0.0996 somatic
63 1029_11H chr15 32804216 84868239 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 10783 1135 -0.7121 -0.7312 0.848 369.0 1.7621 3.2193 1 0 del 1;2;3;4 0.817 0.8773 0.9313 5 0.258 254.37 0.0455 -0.021 somatic
64 1029_11H chr15 84887705 87861056 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 228 70 -0.7308 -0.7144 0.8548 715.3 1.7715 3.1707 1 0 del 1;2;3;4 0.817 0.8773 0.9313 5 0.258 43.88 0.0268 0.0444 somatic
65 1029_11H chr15 87861056 87874376 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 101 22 -0.7993 -0.8093 0.8534 7794.0 1.6589 2.7679 1 0 del 1;2;3;4 0.817 0.8773 0.9313 5 0.258 29.42 -0.0417 0.054 somatic
66 1029_11H chr15 87874496 88030690 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 769 63 -0.908 -0.9041 0.8339 6381.0 1.6549 2.9682 1 0 del 1;2;3;4 0.817 0.8773 0.9313 5 0.258 82.4 -0.1504 -0.095 somatic
67 1029_11H chr15 88030690 88047370 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 129 22 -0.8537 -0.8846 0.8455 7896.0 1.6861 2.8031 1 0 del 1;2;3;4 0.817 0.8773 0.9313 5 0.258 33.76 -0.0961 -0.0077 somatic
68 1029_11H chr15 88047370 88467418 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 779 0 -0.8182 -0.8354 0 0 del 1;2;4 0.4321 0.8773 0.4925 5 0.258 71.61 -0.0018 0.0 somatic
69 1029_11H chr15 88467689 93020607 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 1364 185 -0.707 -0.7043 0.8423 475.0 1.6764 2.9559 1 0 del 1;2;3;4 0.817 0.8773 0.9313 5 0.258 91.68 0.0506 -0.0597 somatic
70 1029_11H chr15 93020607 93045123 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 24 7 -0.5881 -0.6463 0.8564 7724.0 1.704 2.9045 1 0 del 1;2;3;4 0.817 0.8773 0.9313 5 0.258 12.54 0.1695 0.0781 somatic
71 1029_11H chr15 93045110 98960496 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 213 36 -0.7091 -0.7163 0.855 269.5 1.7615 3.1196 1 0 del 1;2;3;4 0.817 0.8773 0.9313 5 0.258 37.69 0.0485 0.0273 somatic
72 1029_11H chr15 98960496 98962776 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 17 6 -0.7272 -0.8157 0.8643 17056.5 1.786 3.1707 1 0 del 1;2;3;5 0.8423 0.8773 0.9601 5 0.258 12.58 0.0616 -0.0018 somatic
73 1029_11H chr15 98962776 101819015 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 425 70 -0.6222 -0.6308 0.8514 468.5 1.7388 3.1367 1 0 del 1;2;3;4 0.817 0.8773 0.9313 5 0.258 48.14 0.1354 0.0103 somatic
74 1029_11H chr16 47432 3029769 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 2395 410 -0.027 -0.0399 0.541 1100.0 0.1117 0.018 2 0 cn-loh 5 0.0603 0.8773 0.0687 5 0.258 6.69 -0.027 0.0196 somatic
75 1029_11H chr16 3030430 13937900 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 2182 211 -0.7585 -0.794 0.8517 480.0 1.7277 3.0229 1 0 del 1;2;3;4 0.817 0.8773 0.9313 5 0.258 120.25 -0.0009 0.0131 somatic
76 1029_11H chr16 13939258 13954453 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 43 16 -0.6819 -0.6114 0.8414 6911.0 1.7156 2.9639 1 0 del 1;2;3;4 0.817 0.8773 0.9313 5 0.258 18.64 0.0757 -0.0394 somatic
77 1029_11H chr16 13957348 27341343 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 2374 206 -0.6895 -0.6738 0.8379 422.9 1.6219 2.8313 1 0 del 1;2;3 0.782 0.8773 0.8914 5 0.258 113.63 0.026 0.0805 somatic
78 1029_11H chr16 27341253 27364835 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 118 28 -1.0701 -1.0433 0.8537 6977.0 1.7007 2.8889 1 0 del 1;2;3;5 0.8423 0.8773 0.9601 5 0.258 40.3 -0.2813 -0.0928 somatic
79 1029_11H chr16 27430027 28121804 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 172 8 -0.6994 -0.702 0.8445 348.5 1.704 2.9519 1 0 del 1;2;3;4 0.817 0.8773 0.9313 5 0.258 30.03 0.0582 -0.0491 somatic
80 1029_11H chr16 28125660 46674701 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 1880 209 0.0538 0.0534 0.5332 1175.5 0.1654 0.0304 4 0 amp 4 0.035 0.8773 0.0399 5 0.258 7.88 0.0041 -0.0258 somatic
81 1029_11H chr16 46676576 72951017 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 4924 457 -0.7063 -0.7033 0.8608 453.0 1.7975 3.302 1 0 del 1;2;3;4 0.817 0.8773 0.9313 5 0.258 170.69 0.0513 0.086 somatic
82 1029_11H chr16 72957371 88737646 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 2103 601 -0.7117 -0.7214 0.8498 588.8 1.734 3.064 1 0 del 1;2;3;4 0.817 0.8773 0.9313 5 0.258 128.14 0.0459 0.0017 somatic
83 1029_11H chr16 88737710 90075935 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 882 63 -0.7678 -0.7852 0.8321 640.0 1.6119 2.8377 1 0 del 1;2;3 0.782 0.8773 0.8914 5 0.258 75.13 -0.0523 0.0457 somatic
84 1029_11H chr17 137555 52987335 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 16481 2211 0.058 0.0539 0.5388 1007.5 0.1367 0.0224 4 0 amp 4 0.035 0.8773 0.0399 5 0.258 25.96 0.0083 -0.0052 somatic
85 1029_11H chr17 53822980 83094575 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 7639 1112 0.5296 0.5316 0.641 1274.7 0.6123 0.394 3 1 amp 1;2;3;5 0.8423 0.8773 0.9601 5 0.258 149.17 0.0225 -0.0537 somatic
86 1029_11H chr18 47389 677929 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 132 28 -0.5336 -0.5053 0.7057 311.0 0.9922 1.547 1 0 del 1;3;5 0.5662 0.8773 0.6454 5 0.258 20.87 -0.0534 -0.0059 somatic
87 1029_11H chr18 678648 722750 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 22 16 -0.4961 -0.5696 0.8708 326.5 1.8175 3.3125 1 0 del 1;2;3;4 0.817 0.8773 0.9313 5 0.258 15.6 0.2615 0.1654 somatic
88 1029_11H chr18 723110 812178 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 48 3 -0.6706 -0.7345 0.8713 1858.0 1.8739 3.5201 1 0 del 1;2;3;5 0.8423 0.8773 0.9601 5 0.258 15.78 0.1182 0.0468 somatic
89 1029_11H chr18 812178 812585 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 3 2 -0.7804 -0.7735 0.8777 3445.5 1.852 3.4241 0 0 del 3;4 0.4199 0.8773 0.4786 5 0.258 4.24 0.0053 0.0 somatic
90 1029_11H chr18 905381 78980375 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 6593 822 0.0253 -0.0046 0.5281 629.0 0.1486 0.0307 3 0 amp 4 0.035 0.8773 0.0399 5 0.258 7.73 0.0003 -0.0226 somatic
91 1029_11H chr18 78992020 80247372 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 203 40 -0.5959 -0.58 0.8616 381.0 1.7954 3.284 1 0 del 1;2;3;4 0.817 0.8773 0.9313 5 0.258 33.86 0.1617 0.0893 somatic
92 1029_11H chr19 110681 746825 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 237 80 -0.7094 -0.7089 0.7749 422.0 1.2534 2.3694 1 0 del 2;3;5 0.7213 0.8773 0.8222 5 0.258 39.57 -0.0641 -0.0803 somatic
93 1029_11H chr19 756935 29824344 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 11173 1603 0.0149 -0.0185 0.5314 887.0 0.151 0.0306 3 0 amp 4 0.035 0.8773 0.0399 5 0.258 8.84 -0.0101 -0.0044 somatic
94 1029_11H chr19 29923665 58571441 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 11611 1865 -0.745 -0.7551 0.8402 553.0 1.662 2.8946 1 0 del 1;2;3;4 0.817 0.8773 0.9313 5 0.258 283.28 0.0126 -0.0727 somatic
95 1029_11H chr2 41522 96921675 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 12948 1462 -0.0026 -0.0149 0.5287 741.0 0.1286 0.0249 2 0 cn-loh 4 0.035 0.8773 0.0399 5 0.258 6.13 -0.0026 0.0156 somatic
96 1029_11H chr2 96923476 97544030 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 161 55 -0.6953 -0.6321 0.6761 907.5 0.5416 0.1725 1 0 del 1;3;4;5 0.6012 0.8773 0.6853 5 0.258 29.33 -0.1794 -0.21 somatic
97 1029_11H chr2 97547493 98519055 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 268 78 -0.0525 -0.0731 0.539 1021.0 0.1202 0.0193 1 0 del 4;5 0.0953 0.8773 0.1086 5 0.258 3.45 0.0179 0.0312 somatic
98 1029_11H chr2 98519930 113074437 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 2378 311 -0.6803 -0.7065 0.8156 417.3 1.4027 2.5109 1 0 del 2;3;4;5 0.7563 0.8773 0.8621 5 0.258 114.25 0.0051 0.0358 somatic
99 1029_11H chr2 113074670 113278459 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 267 83 -0.8359 -0.825 0.8429 9635.0 1.681 2.8366 1 0 del 1;2;3;4 0.817 0.8773 0.9313 5 0.258 51.27 -0.0783 -0.0267 somatic
100 1029_11H chr2 113278348 214436812 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 12251 1407 -0.8035 -0.8081 0.843 371.5 1.6786 3.002 1 0 del 1;2;3;4 0.817 0.8773 0.9313 5 0.258 301.2 -0.0459 -0.0592 somatic
101 1029_11H chr2 214575630 241850111 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 5368 862 -0.7082 -0.7171 0.8508 573.0 1.7557 3.1961 1 0 del 1;2;3;4 0.817 0.8773 0.9313 5 0.258 187.29 0.0494 0.0091 somatic
102 1029_11H chr2 241850111 241873273 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 59 16 -1.1959 -1.119 0.8441 1252.0 1.7719 3.1483 1 0 del 1;2;3;5 0.8423 0.8773 0.9601 5 0.258 31.34 -0.4071 -0.1807 somatic
103 1029_11H chr20 87677 24665523 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 2803 462 -0.71 -0.7133 0.8568 422.0 1.7448 3.1016 1 0 del 1;2;3;4 0.817 0.8773 0.9313 5 0.258 136.89 0.0476 0.0516 somatic
104 1029_11H chr20 24949480 54650475 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 5489 752 -0.2495 -0.2455 0.6175 730.5 0.4745 0.2427 1 0 del 2;5 0.3364 0.8773 0.3834 5 0.258 62.29 0.0162 0.0394 somatic
105 1029_11H chr20 54650418 64273595 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 1951 393 -0.7852 -0.7774 0.8523 612.0 1.7707 3.2123 1 0 del 1;2;3;4 0.817 0.8773 0.9313 5 0.258 125.74 -0.0276 0.022 somatic
106 1029_11H chr21 5117108 41497732 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 2811 267 -0.7075 -0.7196 0.8495 384.5 1.7235 3.129 1 0 del 1;2;3;4 0.817 0.8773 0.9313 5 0.258 128.25 0.0501 -0.0085 somatic
107 1029_11H chr21 41497732 41508532 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 87 11 -0.7661 -1.0476 0.8539 11671.0 1.761 3.2029 1 0 del 1;2;3;4 0.817 0.8773 0.9313 5 0.258 24.87 -0.0085 0.0596 somatic
108 1029_11H chr21 41508532 44215493 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 693 191 -0.6141 -0.6314 0.8574 472.0 1.738 3.0824 1 0 del 1;2;3;4 0.817 0.8773 0.9313 5 0.258 67.74 0.1435 0.0586 somatic
109 1029_11H chr21 44215493 44241005 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 76 30 -1.0353 -1.0024 0.8437 3412.0 1.6989 2.8946 1 0 del 1;2;3;5 0.8423 0.8773 0.9601 5 0.258 32.99 -0.2465 -0.1749 somatic
110 1029_11H chr21 44241005 46664423 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 935 314 -0.7219 -0.7264 0.8454 498.8 1.6478 2.9963 1 0 del 1;2;3;4 0.817 0.8773 0.9313 5 0.258 88.12 0.0357 -0.0352 somatic
111 1029_11H chr22 15528158 20950049 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 1093 173 -0.7164 -0.71 0.8305 452.0 1.6389 2.8093 1 0 del 1;2;3 0.782 0.8773 0.8914 5 0.258 83.32 -0.0009 0.0283 somatic
112 1029_11H chr22 20950049 20998003 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 130 34 -0.8331 -0.8683 0.8554 2273.0 1.7775 3.2269 1 0 del 1;2;3;5 0.8423 0.8773 0.9601 5 0.258 35.33 -0.0443 -0.0864 somatic
113 1029_11H chr22 20998003 22162600 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 350 23 -0.682 -0.7024 0.7772 828.0 1.1556 2.3396 1 0 del 2;3;5 0.7213 0.8773 0.8222 5 0.258 41.45 -0.0367 -0.056 somatic
114 1029_11H chr22 22162604 22215248 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 21 13 -0.6918 -0.7592 0.8577 4444.0 1.7644 3.1119 1 0 del 1;2;3;4 0.817 0.8773 0.9313 5 0.258 15.51 0.0658 0.0859 somatic
115 1029_11H chr22 22244769 22395850 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 74 0 -0.8119 -0.7644 0 0 del 1;2;4 0.4321 0.8773 0.4925 5 0.258 21.9 0.0045 0.0 somatic
116 1029_11H chr22 22404280 22404927 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 10 13 -1.0802 -1.0593 0.832 7562.2 1.6828 2.8764 1 0 del 1;2;3;5 0.8423 0.8773 0.9601 5 0.258 15.08 -0.2914 -0.2565 somatic
117 1029_11H chr22 22404867 22940684 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 372 15 -0.9338 -0.9351 0.8619 2497.0 1.8581 3.4723 1 0 del 1;2;3;5 0.8423 0.8773 0.9601 5 0.258 57.96 -0.145 -0.032 somatic
118 1029_11H chr22 22940624 23801437 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 517 52 -0.8734 -0.8906 0.8404 2567.0 1.721 2.9946 1 0 del 1;2;3;4 0.817 0.8773 0.9313 5 0.258 66.03 -0.1158 -0.053 somatic
119 1029_11H chr22 23801906 23958632 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 90 43 -0.9193 -0.8874 0.8518 2315.5 1.7267 2.9873 1 0 del 1;2;3;5 0.8423 0.8773 0.9601 5 0.258 34.49 -0.1305 -0.115 somatic
120 1029_11H chr22 23958629 50782316 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 6713 1188 -0.7259 -0.7248 0.8479 555.0 1.7242 3.0245 1 0 del 1;2;3;4 0.817 0.8773 0.9313 5 0.258 215.22 0.0317 -0.0141 somatic
121 1029_11H chr3 319726 2900843 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 107 6 -0.772 -0.8087 0.591 382.5 0.4533 0.2325 0 0 del 3;4 0.4199 0.8773 0.4786 5 0.258 25.09 0.0137 0.3273 somatic
122 1029_11H chr3 2902854 73624882 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 12754 1229 0.0537 0.0552 0.5271 827.0 0.128 0.0219 4 1 amp 4 0.035 0.8773 0.0399 5 0.258 19.73 0.004 0.0131 somatic
123 1029_11H chr3 74264388 75666040 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 56 61 -0.2168 -0.1427 0.657 1745.8 0.4275 0.1861 1 0 del 3 0.3849 0.8773 0.4387 5 0.258 10.44 0.0916 0.1449 somatic
124 1029_11H chr3 75730433 109308160 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 1800 167 -0.1817 -0.1475 0.5302 540.5 0.1616 0.0313 0 0 del 1 0.121 0.8773 0.1379 5 0.258 24.26 0.0044 0.0866 somatic
125 1029_11H chr3 109308164 198169878 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 12220 1312 0.0008 -0.0051 0.5299 671.0 0.1317 0.0209 2 0 cn-loh 4 0.035 0.8773 0.0399 5 0.258 5.97 0.0008 0.0189 somatic
126 1029_11H chr4 53399 55463810 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 6031 985 0.4904 0.4798 0.6513 1081.0 0.6 0.376 3 1 amp 1;2;3;4 0.817 0.8773 0.9313 5 0.258 124.41 -0.0038 0.0033 somatic
127 1029_11H chr4 55470669 57015668 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 365 54 -0.0138 0.0075 0.5523 539.0 0.1996 0.0418 2 0 cn-loh 4;5 0.0953 0.8773 0.1086 5 0.258 2.53 -0.0138 -0.0156 somatic
128 1029_11H chr4 57017034 184017293 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 10582 1215 -0.8442 -0.8409 0.8537 289.0 1.7311 3.1233 1 0 del 1;2;3;4 0.817 0.8773 0.9313 5 0.258 293.98 -0.0866 0.0185 somatic
129 1029_11H chr4 184091147 184474194 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 74 12 -0.5155 -0.5442 0.8434 5287.0 1.7436 3.0505 1 0 del 1;2;3 0.782 0.8773 0.8914 5 0.258 17.56 0.2 0.1494 somatic
130 1029_11H chr4 184474345 190174838 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 715 98 -0.6416 -0.6693 0.8457 447.0 1.6818 2.995 1 0 del 1;2;3 0.782 0.8773 0.8914 5 0.258 61.83 0.0739 0.1402 somatic
131 1029_11H chr5 113220 65994894 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 5348 746 -0.0218 -0.0365 0.5398 659.0 0.1397 0.0257 2 0 cn-loh 5 0.0603 0.8773 0.0687 5 0.258 8.19 -0.0218 0.0077 somatic
132 1029_11H chr5 66012001 72905444 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 939 50 0.5576 0.5375 0.6552 1221.0 0.6078 0.3931 4 1 amp 1;2;5 0.4574 0.8773 0.5214 5 0.258 54.19 0.0142 -0.0305 somatic
133 1029_11H chr5 72956028 74736881 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 243 32 0.0264 0.0408 0.5259 622.0 0.2086 0.0555 3 1 amp 5 0.0603 0.8773 0.0687 5 0.258 1.49 -0.0165 0.0131 somatic
134 1029_11H chr5 74736866 116292579 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 3608 474 -0.1078 -0.0794 0.5345 520.0 0.1869 0.0405 1 0 del 1 0.121 0.8773 0.1379 5 0.258 20.73 -0.0178 -0.0258 somatic
135 1029_11H chr5 116446612 126360494 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 524 62 0.4751 0.4775 0.6433 610.0 0.5954 0.3866 4 1 amp 3 0.3849 0.8773 0.4387 5 0.258 35.06 0.0053 -0.0135 somatic
136 1029_11H chr5 126423587 150073521 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 4911 412 -0.7042 -0.7204 0.8572 445.7 1.7762 3.2082 1 0 del 1;2;3;4 0.817 0.8773 0.9313 5 0.258 168.2 0.0534 0.0559 somatic
137 1029_11H chr5 150077236 150120175 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 52 13 -0.9099 -0.8047 0.8625 2579.0 1.7857 3.2018 1 0 del 1;2;3;5 0.8423 0.8773 0.9601 5 0.258 23.89 -0.1211 -0.0267 somatic
138 1029_11H chr5 150120829 154478008 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 784 153 -0.7019 -0.7217 0.8501 523.0 1.7227 3.0091 1 0 del 1;2;3;4 0.817 0.8773 0.9313 5 0.258 72.89 0.0557 0.002 somatic
139 1029_11H chr5 154712923 160604097 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 706 90 0.1057 0.0934 0.5396 673.5 0.2401 0.0686 6 1 amp 4 0.035 0.8773 0.0399 5 0.258 9.09 0.008 -0.0031 somatic
140 1029_11H chr5 160606763 171456817 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 756 122 0.5345 0.5098 0.6535 806.5 0.6088 0.3833 3 1 amp 1;2;3;4;5 0.8773 0.8773 1.0 5 0.258 47.72 0.0098 -0.0235 somatic
141 1029_11H chr5 171785863 177082025 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 646 52 -0.6959 -0.696 0.7901 402.5 1.311 2.4483 1 0 del 2;3;5 0.7213 0.8773 0.8222 5 0.258 58.06 -0.0506 0.0081 somatic
142 1029_11H chr5 177086456 177298698 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 260 31 -0.8339 -0.8685 0.8592 4271.5 1.7528 3.1097 1 0 del 1;2;3;5 0.8423 0.8773 0.9601 5 0.258 46.05 -0.0451 -0.0508 somatic
143 1029_11H chr5 177298698 177299058 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 3 2 -1.0161 -0.9786 0.8585 16564.5 1.7538 3.0747 0 0 del 1;3 0.5059 0.8773 0.5767 5 0.258 5.52 0.0011 0.0 somatic
144 1029_11H chr5 177299058 180591500 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 877 139 -0.7079 -0.6959 0.8505 413.0 1.7229 3.1666 1 0 del 1;2;3;4 0.817 0.8773 0.9313 5 0.258 75.47 0.0497 0.0008 somatic
145 1029_11H chr5 180601488 180631831 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 118 29 -0.962 -0.9226 0.8577 2263.5 1.8207 3.3145 1 0 del 1;2;3;5 0.8423 0.8773 0.9601 5 0.258 37.26 -0.1732 -0.0677 somatic
146 1029_11H chr5 180649436 181260807 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 150 3 -0.714 -0.7319 0.8699 660.0 1.9183 3.6914 1 0 del 1;2;3;5 0.8423 0.8773 0.9601 5 0.258 28.07 0.0748 0.0218 somatic
147 1029_11H chr6 304553 29728774 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 3423 543 -0.2671 -0.2752 0.6204 695.0 0.5177 0.2854 1 0 del 2;4;5 0.3714 0.8773 0.4233 5 0.258 52.88 0.0293 -0.0033 somatic
148 1029_11H chr6 29728774 29950768 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 112 183 -0.6235 -0.5385 0.6593 11159.3 0.4643 0.2323 1 0 del 1;3;5 0.5662 0.8773 0.6454 5 0.258 26.36 -0.1433 -0.1826 somatic
149 1029_11H chr6 30061482 31170618 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 683 170 -0.231 -0.2476 0.6452 1074.0 0.5507 0.3209 1 0 del 2;4;5 0.3714 0.8773 0.4233 5 0.258 23.45 0.0654 0.1094 somatic
150 1029_11H chr6 31264705 31539271 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 119 141 -0.3716 -0.5206 0.6176 1224.2 0.4823 0.2481 1 0 del 1;2 0.3971 0.8773 0.4526 5 0.258 16.19 -0.0523 -0.0495 somatic
151 1029_11H chr6 31539211 32204242 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 1069 112 -0.225 -0.2524 0.6265 1205.0 0.5373 0.32 1 0 del 2;5 0.3364 0.8773 0.3834 5 0.258 25.02 0.0407 0.0842 somatic
152 1029_11H chr6 32204203 33085231 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 535 324 -0.3349 -0.3215 0.6227 5821.6 0.4646 0.2348 1 0 del 1;2 0.3971 0.8773 0.4526 5 0.258 29.27 -0.0156 -0.0155 somatic
153 1029_11H chr6 33085151 33164359 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 37 84 -0.1934 -0.2477 0.5595 12169.0 0.5566 0.3017 1 0 del 1;4;5 0.2163 0.8773 0.2466 5 0.258 5.39 -0.0282 -0.0119 somatic
154 1029_11H chr6 33164386 87340277 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 7394 882 -0.2959 -0.2993 0.6192 505.0 0.4768 0.2634 1 0 del 2;4;5 0.3714 0.8773 0.4233 5 0.258 83.54 0.0005 -0.0136 somatic
155 1029_11H chr6 87341176 95586653 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 792 122 0.0757 0.0688 0.5326 713.5 0.1941 0.0527 5 1 amp 4 0.035 0.8773 0.0399 5 0.258 6.99 0.0018 0.0008 somatic
156 1029_11H chr6 95586620 147373899 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 6325 603 -0.362 -0.3721 0.6288 501.2 0.5528 0.324 1 0 del 3;4 0.4199 0.8773 0.4786 5 0.258 93.0 -0.022 -0.0532 somatic
157 1029_11H chr6 147382759 170584636 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 3434 506 -0.2363 -0.2443 0.6211 717.8 0.5214 0.2862 1 0 del 2;5 0.3364 0.8773 0.3834 5 0.258 47.53 0.0294 0.0544 somatic
158 1029_11H chr7 193154 144648933 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 19132 2586 0.01 -0.0165 0.5409 798.5 0.133 0.0302 2 0 cn-loh 5 0.0603 0.8773 0.0687 5 0.258 13.49 0.01 0.015 somatic
159 1029_11H chr7 144667733 159144810 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 2357 257 -0.2713 -0.2862 0.6309 839.5 0.4742 0.2607 1 0 del 2;4;5 0.3714 0.8773 0.4233 5 0.258 43.97 0.0251 0.0443 somatic
160 1029_11H chr8 166190 32725075 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 4351 644 -0.7266 -0.7503 0.8407 466.0 1.6571 2.9517 1 0 del 1;2;3;4 0.817 0.8773 0.9313 5 0.258 168.58 0.031 -0.072 somatic
161 1029_11H chr8 32725075 32751715 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 191 43 -0.7257 -0.7666 0.838 4206.5 1.6801 2.8668 1 0 del 1;2;3;4 0.817 0.8773 0.9313 5 0.258 37.16 0.0319 -0.0674 somatic
162 1029_11H chr8 32751715 38428590 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 897 52 -0.771 -0.7873 0.8543 925.2 1.735 3.0343 1 0 del 1;2;3;4 0.817 0.8773 0.9313 5 0.258 76.05 -0.0134 0.044 somatic
163 1029_11H chr8 38428590 38467710 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 249 20 -0.8018 -0.7912 0.8563 14708.0 1.8157 3.308 1 0 del 1;2;3;5 0.8423 0.8773 0.9601 5 0.258 42.32 -0.013 -0.0689 somatic
164 1029_11H chr8 38467710 40153853 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 313 46 -0.8043 -0.8261 0.8583 279.2 1.7832 3.2116 1 0 del 1;2;3;4 0.817 0.8773 0.9313 5 0.258 49.75 -0.0467 0.055 somatic
165 1029_11H chr8 40532125 68446485 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 2731 199 0.0121 -0.006 0.5309 678.0 0.108 0.0154 3 0 amp 4 0.035 0.8773 0.0399 5 0.258 3.14 -0.0129 -0.0102 somatic
166 1029_11H chr8 68468658 145054212 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 7931 1075 -0.3789 -0.3831 0.6292 551.5 0.5367 0.3132 1 0 del 3;4 0.4199 0.8773 0.4786 5 0.258 109.99 -0.0389 -0.0498 somatic
167 1029_11H chr9 15056 2023267 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 213 39 -0.6524 -0.6312 0.8536 425.0 1.6974 3.2525 1 0 del 1;2;3;4 0.817 0.8773 0.9313 5 0.258 35.89 0.1052 0.0259 somatic
168 1029_11H chr9 2028937 2039788 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 16 5 -0.8026 -0.7674 0.8282 7518.0 1.5974 2.5572 1 0 del 1;2;3 0.782 0.8773 0.8914 5 0.258 11.97 -0.0871 0.0404 somatic
169 1029_11H chr9 2039828 2158535 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 125 10 -0.6847 -0.6999 0.8454 2072.0 1.714 2.9458 1 0 del 1;2;3;4 0.817 0.8773 0.9313 5 0.258 25.94 0.0729 -0.017 somatic
170 1029_11H chr9 2158535 2192445 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 39 12 -0.6328 -0.7257 0.8705 9094.5 1.8349 3.3791 1 0 del 1;2;3;5 0.8423 0.8773 0.9601 5 0.258 17.36 0.156 0.0498 somatic
171 1029_11H chr9 2192445 5450745 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 387 52 -0.7525 -0.8103 0.8541 477.5 1.7106 2.9735 1 0 del 1;2;3;4 0.817 0.8773 0.9313 5 0.258 51.85 0.0051 0.0321 somatic
172 1029_11H chr9 5450685 5451045 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 5 4 -0.6092 -0.6425 0.8427 9290.5 1.7699 3.1307 1 0 del 1;2;3 0.782 0.8773 0.8914 5 0.258 7.51 0.1063 0.1468 somatic
173 1029_11H chr9 5450985 5468005 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 55 8 -0.5621 -0.7068 0.8347 3329.0 1.5782 2.4985 1 0 del 1;2;3 0.782 0.8773 0.8914 5 0.258 15.54 0.1534 0.0821 somatic
174 1029_11H chr9 5467930 5512416 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 33 11 -0.5222 -0.479 0.8488 11265.0 1.7001 2.9185 1 0 del 1;2;3 0.782 0.8773 0.8914 5 0.258 14.13 0.1933 0.1943 somatic
175 1029_11H chr9 5518959 21141577 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 1559 191 -0.808 -0.8058 0.8399 333.0 1.6982 2.9908 1 0 del 1;2;3;4 0.817 0.8773 0.9313 5 0.258 108.22 -0.0504 -0.0847 somatic
176 1029_11H chr9 21166043 21228164 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 23 17 -0.9738 -0.9887 0.8141 2419.6 1.6646 2.7876 1 0 del 1;2;3;4 0.817 0.8773 0.9313 5 0.258 18.4 -0.2162 -0.2378 somatic
177 1029_11H chr9 21239374 21481292 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 44 4 -0.8085 -0.7871 0.8678 1425.0 1.616 2.6276 1 0 del 1;2;3;5 0.8423 0.8773 0.9601 5 0.258 18.17 -0.0197 0.0133 somatic
178 1029_11H chr9 21797636 26995849 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 303 39 -2.6064 -2.6315 0.5319 498.5 0.1399 0.027 0 0 del 1;2;3;5 0.8423 0.8773 0.9601 5 0.258 142.28 0.0586 0.092 somatic
179 1029_11H chr9 26996302 36837913 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 1734 233 -0.6899 -0.6954 0.8146 517.0 1.6307 2.9477 1 0 del 2;3;4;5 0.7563 0.8773 0.8621 5 0.258 98.9 -0.0045 0.0332 somatic
180 1029_11H chr9 36837913 36838273 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 3 1 -0.9586 -0.9145 0.872 12939.0 1.9159 0 0 del 3;4;5 0.4802 0.8773 0.5474 5 0.258 5.21 -0.0145 0.0 somatic
181 1029_11H chr9 36838273 37025393 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 92 15 -0.9513 -0.8674 0.8453 2031.0 1.7751 3.1632 1 0 del 1;2;3;5 0.8423 0.8773 0.9601 5 0.258 31.04 -0.1625 -0.1667 somatic
182 1029_11H chr9 37025333 37033788 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 25 7 -1.138 -1.0933 0.8455 8958.0 1.6993 2.8887 1 0 del 1;2;3;5 0.8423 0.8773 0.9601 5 0.258 19.67 -0.3492 -0.1559 somatic
183 1029_11H chr9 37033724 39140638 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 367 68 -0.7837 -0.7686 0.7966 431.0 1.4293 2.4566 1 0 del 2;3;4;5 0.7563 0.8773 0.8621 5 0.258 51.25 -0.0983 -0.0852 somatic
184 1029_11H chr9 39144232 68384558 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 377 38 -0.4254 -0.3769 0.6087 971.0 0.2522 0.0756 1 0 del 3;4 0.4199 0.8773 0.4786 5 0.258 26.33 -0.0854 -0.1284 somatic
185 1029_11H chr9 68387411 136496018 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 11948 1515 0.0537 0.0456 0.5254 768.0 0.123 0.0193 4 1 amp 4 0.035 0.8773 0.0399 5 0.258 19.14 0.004 0.0052 somatic
186 1029_11H chr9 136495936 136663636 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 332 16 -0.4899 -0.4043 0.5133 10234.5 0.0441 0.002 0 0 del 2 0.2761 0.8773 0.3147 5 0.258 27.99 -0.0238 0.0453 somatic
187 1029_11H chr9 136664679 138231128 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 1042 183 -0.0411 -0.0432 0.5279 1115.8 0.1266 0.0185 1 0 del 5 0.0603 0.8773 0.0687 5 0.258 4.71 0.0031 0.0256 somatic
188 1029_11H chrX 284194 112823178 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 11666 547 -0.0761 -0.0699 0.5684 850.2 0.2388 0.0851 1 0 del 1;4 0.156 0.8773 0.1778 5 0.258 27.92 0.0411 0.0783 somatic
189 1029_11H chrX 114726864 156010443 1029_11H-T1-TDNA-1_B23KFCWLT4_1 1029_11H-N1-BDNA-1_B23KGCJLT4_1 4693 215 -0.4278 -0.4524 0.5971 727.0 0.3913 0.1739 1 0 del 1;2 0.3971 0.8773 0.4526 5 0.258 92.43 -0.1085 -0.1422 somatic
190 rows