[W::hts_idx_load3] The index file is older than the data file: 1029_0W2-T1-TDNA-1_A23KCGYLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_0W2-T1-TDNA-1_A23KCGYLT4_1.recalibrated.bam.bai
Loaded 53092669 sites across 3366 contigs
Loaded 53092669 sites across 3366 contigs
Reads: 461015399 total, 3945421 skipped (flags/unmapped), 39905205 no site overlap
Fragments: 216631828 total (199423931 paired, 1909 singletons, 1109014 discordant, 16096974 orphans)
Sites: 53092669 total, 10156821 with data, 4335314 output (depth>=10)
Reads: 497007630 total, 3690467 skipped (flags/unmapped), 43203720 no site overlap
Fragments: 233331000 total (215644312 paired, 2178 singletons, 1138131 discordant, 16546379 orphans)
Sites: 53092669 total, 9488436 with data, 4118502 output (depth>=10)