[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1029_11H-T1-TDNA-1_B23KFCWLT4_1.recalibrated.bam.baiThe index file is older than the data file: 1029_11H-T1-TDNA-1_B23KFCWLT4_1.recalibrated.bam.bai

Loaded 53092669 sites across 3366 contigs
Loaded 53092669 sites across 3366 contigs
Reads: 763082458 total, 2663545 skipped (flags/unmapped), 63118875 no site overlap
Fragments: 362213758 total (333694227 paired, 3348 singletons, 1392053 discordant, 27124130 orphans)
Sites: 53092669 total, 9994095 with data, 4880668 output (depth>=10)
Reads: 802510377 total, 3103406 skipped (flags/unmapped), 68712911 no site overlap
Fragments: 380508574 total (349022403 paired, 2976 singletons, 1163083 discordant, 30320112 orphans)
Sites: 53092669 total, 11245177 with data, 5485863 output (depth>=10)