[W::hts_idx_load3] The index file is older than the data file: 1029_01S-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_01S-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
Loaded 53092669 sites across 3366 contigs
Loaded 53092669 sites across 3366 contigs
Reads: 226167001 total, 141393 skipped (flags/unmapped), 19060797 no site overlap
Fragments: 108992327 total (97917056 paired, 749 singletons, 55428 discordant, 11019094 orphans)
Sites: 53092669 total, 8455238 with data, 3544927 output (depth>=10)
Reads: 243105212 total, 163906 skipped (flags/unmapped), 21773973 no site overlap
Fragments: 116319359 total (104455931 paired, 847 singletons, 392043 discordant, 11470538 orphans)
Sites: 53092669 total, 7969259 with data, 3434027 output (depth>=10)