File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/82/a7c230e62b59986ae5aa52097e7ec6/.command.log
Size
1.1 KB
Task
SOMATIC_CNV_CALLING:SOMA_CNV_ALLELE_COUNTS (1029_01S-T1-TDNA-1_B23KFCWLT4_1)
Attempt

Content

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  Downloading: s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260318_LH00519_0070_B23KFCWLT4__d7a6b981--20260320-092016/alignments/recalibrated/1029_01S-T1-TDNA-1_B23KFCWLT4_1/1029_01S-T1-TDNA-1_B23KFCWLT4_1.recalibrated.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/82/a7c230e62b59986ae5aa52097e7ec6/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/82/a7c230e62b59986ae5aa52097e7ec6/.command.run
  Downloading: s3://ai-pipelines-experiment/chnobles/ref_data/dbsnp138.snps.hg38.tsv.gz
  Downloading: s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260318_LH00519_0070_B23KFCWLT4__d7a6b981--20260320-092016/alignments/recalibrated/1029_01S-T1-TDNA-1_B23KFCWLT4_1/1029_01S-T1-TDNA-1_B23KFCWLT4_1.recalibrated.bam.bai
==> STAGING COMPLETE (5 inputs)

[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1029_01S-T1-TDNA-1_B23KFCWLT4_1.recalibrated.bam.baiThe index file is older than the data file: 1029_01S-T1-TDNA-1_B23KFCWLT4_1.recalibrated.bam.bai

Loaded 53092669 sites across 3366 contigs
Loaded 53092669 sites across 3366 contigs