Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/dc/da6a453cb3e8ab21e2aa16a8c8fbf8/1029_0W2-N1-BDNA-1_B23KGCJLT4_1_normalized.parquet
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4f/d0e59d1861d0a9f7fc099d1ac03de5/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b9/f75781ee9a4b8b65d85167da765c62/1029_0W2-T1-TDNA-1_A23KCGYLT4_1_alleles.tsv.gz
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/tmp/b0/86f7ac8f46fa983c8a51d84baf0279/pairs.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a6/ae4923592bdca2ff06b67e0f0fac53/1029_0W2_segments.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4f/d0e59d1861d0a9f7fc099d1ac03de5/.command.run
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/45/feab45abe93253f62496f461f0f437/1029_0W2-N1-BDNA-1_B23KGCJLT4_1_alleles.tsv.gz
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b6/86a8fe5f0dcb6f87f158470fa40e2d/1029_0W2-T1-TDNA-1_A23KCGYLT4_1_normalized.parquet
==> STAGING COMPLETE (8 inputs)
mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-xhopo_f7 because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
Batch mode: 1 of 1 specimens
Loading parquets for 1 specimens...
WARNING: missing ./1029_0W2/1029_0W2-T1-TDNA-1_A23KCGYLT4_1.parquet
WARNING: missing ./1029_0W2/1029_0W2-N1-BDNA-1_B23KGCJLT4_1.parquet
0 rows in 0.0s
Traceback (most recent call last):
File "/usr/local/bin/export_viewer.py", line 1331, in <module>
main()
File "/usr/local/bin/export_viewer.py", line 1221, in main
offsets = compute_offsets(sample_groups[first_sample])
~~~~~~~~~~~~~^^^^^^^^^^^^^^
KeyError: '1029_0W2-T1-TDNA-1_A23KCGYLT4_1'