.command.sh - Workdir - SOMATIC_CNV_CALLING:SOMA_CNV_EXPORT_VIEWER (1029_0W2)

File Info

Filename: .command.sh
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8c/525bc2f1e1bf70a6da544d40e52e27/.command.sh
Size: 240 bytes
Task: SOMATIC_CNV_CALLING:SOMA_CNV_EXPORT_VIEWER (1029_0W2)
Attempt

Content

#!/bin/bash -Ceuo pipefail
python /usr/local/bin/export_viewer.py \
    --normalized-dir . \
    --pairs pairs.tsv \
    --segments 1029_0W2_segments.tsv \
    --output-dir viewer \
    --specimens-file <(echo "1029_0W2") \
    --workers 4