File Info

Filename
1029_01S_segments.tsv
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d5/220921dce80d0c96b5533fba9353fc/1029_01S_segments.tsv
Size
30.9 KB
Task
SOMATIC_CNV_CALLING:SOMA_CNV_CALL (1029_01S)
Attempt

Content

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seg_id specimen_id chrom start end tumor_sample_id normal_sample_id n_probes n_het_sites cnlr_median cnlr_wmean mean_mbaf median_het_depth mean_valor mafR tcn lcn call clone_subset clone_purity purity clonal_frac n_clones dipLogR z_score residual_lr residual_lor sample_type
1 1029_01S chr1 69641 3775914 1029_01S-T1-TDNA-1_B23KFCWLT4_1 1029_01S-N1-BDNA-1_B23KGCJLT4_1 1324 314 -0.0015 -0.0072 0.5381 1154.0 0.1759 0.0352 2 0 cn-loh 4;5 0.0663 0.1851 0.3581 5 -0.244 6.75 -0.0015 -0.0036 somatic
2 1029_01S chr1 3781087 15848144 1029_01S-T1-TDNA-1_B23KFCWLT4_1 1029_01S-N1-BDNA-1_B23KGCJLT4_1 2830 437 0.1807 0.1777 0.5272 1151.0 0.1342 0.025 5 2 amp 2;4;5 0.0916 0.1851 0.495 5 -0.244 30.46 -0.0051 0.0048 somatic
3 1029_01S chr1 15848027 15931107 1029_01S-T1-TDNA-1_B23KFCWLT4_1 1029_01S-N1-BDNA-1_B23KGCJLT4_1 151 2 -0.1856 -0.0826 0.5121 40383.0 0.049 0.0017 0 0 del 1;2;3 0.1188 0.1851 0.6419 5 -0.244 7.12 -0.0031 0.0 somatic
4 1029_01S chr1 15931040 15940007 1029_01S-T1-TDNA-1_B23KFCWLT4_1 1029_01S-N1-BDNA-1_B23KGCJLT4_1 180 5 -0.6527 -0.5459 0.5141 28145.0 0.0369 0.0014 0 0 del 1;2;3;4;5 0.1851 0.1851 1.0 5 -0.244 27.33 -0.3573 0.0517 somatic
5 1029_01S chr1 15940007 18859686 1029_01S-T1-TDNA-1_B23KFCWLT4_1 1029_01S-N1-BDNA-1_B23KGCJLT4_1 787 205 0.1148 0.1057 0.5575 1498.0 0.1272 0.0181 6 0 amp 2;3 0.0409 0.1851 0.2209 5 -0.244 13.41 0.0014 -0.0174 somatic
6 1029_01S chr1 18872840 111184353 1029_01S-T1-TDNA-1_B23KFCWLT4_1 1029_01S-N1-BDNA-1_B23KGCJLT4_1 15547 1647 0.2294 0.2173 0.5307 1044.0 0.1531 0.0297 5 2 amp 1;5 0.1132 0.1851 0.6114 5 -0.244 90.05 0.0031 0.0014 somatic
7 1029_01S chr1 111187554 117368483 1029_01S-T1-TDNA-1_B23KFCWLT4_1 1029_01S-N1-BDNA-1_B23KGCJLT4_1 1303 183 0.3635 0.3515 0.533 1213.0 0.1487 0.0282 5 2 amp 1;2;3;4;5 0.1851 0.1851 1.0 5 -0.244 41.18 0.01 -0.0359 somatic
8 1029_01S chr1 117402184 156832531 1029_01S-T1-TDNA-1_B23KFCWLT4_1 1029_01S-N1-BDNA-1_B23KGCJLT4_1 5085 423 0.2412 0.2392 0.529 1338.5 0.12 0.019 5 2 amp 1;2;3 0.1188 0.1851 0.6419 5 -0.244 53.99 0.0046 -0.0066 somatic
9 1029_01S chr1 156837671 156963623 1029_01S-T1-TDNA-1_B23KFCWLT4_1 1029_01S-N1-BDNA-1_B23KGCJLT4_1 280 30 -0.0016 -0.0119 0.5181 1958.0 0.0381 0.0015 2 0 cn-loh 2 0.0253 0.1851 0.1369 5 -0.244 0.88 -0.0016 0.0037 somatic
10 1029_01S chr1 156967995 184054918 1029_01S-T1-TDNA-1_B23KFCWLT4_1 1029_01S-N1-BDNA-1_B23KGCJLT4_1 5032 940 0.3505 0.3301 0.5257 1158.5 0.139 0.0243 5 2 amp 1;2;4;5 0.1696 0.1851 0.916 5 -0.244 77.93 0.0235 -0.056 somatic
11 1029_01S chr1 184072099 193148001 1029_01S-T1-TDNA-1_B23KFCWLT4_1 1029_01S-N1-BDNA-1_B23KGCJLT4_1 756 83 0.1197 0.12 0.5409 664.5 0.182 0.0396 3 1 amp 1;2;3;5 0.1541 0.1851 0.8323 5 -0.244 10.88 0.0126 -0.0103 somatic
12 1029_01S chr1 193150257 196258501 1029_01S-T1-TDNA-1_B23KFCWLT4_1 1029_01S-N1-BDNA-1_B23KGCJLT4_1 47 2 0.6337 0.6196 0.5211 1951.5 0.258 0.0554 8 0 high-amp 1;2;3;4;5 0.1851 0.1851 1.0 5 -0.244 13.56 -0.0036 0.0 somatic
13 1029_01S chr1 196273387 197143863 1029_01S-T1-TDNA-1_B23KFCWLT4_1 1029_01S-N1-BDNA-1_B23KGCJLT4_1 251 45 -0.1577 -0.1688 0.5447 682.0 0.1858 0.0313 1 0 del 1;3;4;5 0.1598 0.1851 0.8631 5 -0.244 8.33 -0.0376 -0.0254 somatic
14 1029_01S chr1 197146140 248918363 1029_01S-T1-TDNA-1_B23KFCWLT4_1 1029_01S-N1-BDNA-1_B23KGCJLT4_1 8915 1594 0.2667 0.2524 0.5321 1190.5 0.1357 0.0233 5 2 amp 1;2;4 0.1343 0.1851 0.7256 5 -0.244 79.57 0.0019 -0.0065 somatic
15 1029_01S chr10 47057 37130266 1029_01S-T1-TDNA-1_B23KFCWLT4_1 1029_01S-N1-BDNA-1_B23KGCJLT4_1 3746 674 0.3732 0.3495 0.5325 1009.0 0.1579 0.0342 5 2 amp 1;2;3;4;5 0.1851 0.1851 1.0 5 -0.244 71.74 0.0197 -0.0401 somatic
16 1029_01S chr10 37130203 43109258 1029_01S-T1-TDNA-1_B23KFCWLT4_1 1029_01S-N1-BDNA-1_B23KGCJLT4_1 212 29 0.1816 0.1477 0.5312 1789.8 0.1317 0.0268 6 2 amp 4;5 0.0663 0.1851 0.3581 5 -0.244 8.42 0.002 -0.0111 somatic
17 1029_01S chr10 43111140 43121910 1029_01S-T1-TDNA-1_B23KFCWLT4_1 1029_01S-N1-BDNA-1_B23KGCJLT4_1 93 12 -0.2724 -0.27 0.5163 21803.0 0.0344 0.0003 0 0 del 1;2;3;4;5 0.1851 0.1851 1.0 5 -0.244 8.22 0.023 0.0598 somatic
18 1029_01S chr10 43121925 132104934 1029_01S-T1-TDNA-1_B23KFCWLT4_1 1029_01S-N1-BDNA-1_B23KGCJLT4_1 12208 1667 0.2698 0.2576 0.5327 1128.0 0.1193 0.02 5 2 amp 1;2;4 0.1343 0.1851 0.7256 5 -0.244 93.93 0.005 -0.0047 somatic
19 1029_01S chr10 132117085 133626762 1029_01S-T1-TDNA-1_B23KFCWLT4_1 1029_01S-N1-BDNA-1_B23KGCJLT4_1 513 90 0.1008 0.1084 0.5502 1153.8 0.1842 0.0375 7 0 high-amp 4 0.031 0.1851 0.1677 5 -0.244 8.69 -0.007 -0.0243 somatic
20 1029_01S chr11 193064 2929364 1029_01S-T1-TDNA-1_B23KFCWLT4_1 1029_01S-N1-BDNA-1_B23KGCJLT4_1 1480 365 0.0147 0.0315 0.5542 1417.0 0.1225 0.0201 2 0 cn-loh 1;3 0.0935 0.1851 0.505 5 -0.244 11.21 0.0147 0.0089 somatic
21 1029_01S chr11 2949152 61444227 1029_01S-T1-TDNA-1_B23KFCWLT4_1 1029_01S-N1-BDNA-1_B23KGCJLT4_1 8041 1317 0.3279 0.3094 0.5362 1472.0 0.1457 0.0252 5 2 amp 1;2;4;5 0.1696 0.1851 0.916 5 -0.244 92.73 0.0009 -0.0111 somatic
22 1029_01S chr11 61445912 73395533 1029_01S-T1-TDNA-1_B23KFCWLT4_1 1029_01S-N1-BDNA-1_B23KGCJLT4_1 4845 483 0.1644 0.1604 0.531 1275.0 0.1506 0.0275 6 2 amp 2;5 0.0606 0.1851 0.3273 5 -0.244 36.32 -0.0007 -0.0064 somatic
23 1029_01S chr11 73407526 77214036 1029_01S-T1-TDNA-1_B23KFCWLT4_1 1029_01S-N1-BDNA-1_B23KGCJLT4_1 827 153 0.2827 0.2716 0.5285 1008.5 0.1627 0.0298 5 2 amp 1;2;5 0.1385 0.1851 0.7483 5 -0.244 25.58 0.0103 -0.0258 somatic
24 1029_01S chr11 77214591 134387716 1029_01S-T1-TDNA-1_B23KFCWLT4_1 1029_01S-N1-BDNA-1_B23KGCJLT4_1 7950 999 0.3267 0.316 0.5295 1091.0 0.1601 0.0322 5 2 amp 1;3;4;5 0.1598 0.1851 0.8631 5 -0.244 91.34 0.0167 -0.0351 somatic
25 1029_01S chr12 66830 18081473 1029_01S-T1-TDNA-1_B23KFCWLT4_1 1029_01S-N1-BDNA-1_B23KGCJLT4_1 4650 856 0.3084 0.3075 0.522 1480.2 0.0766 0.0085 5 2 amp 1;2;3;4 0.1499 0.1851 0.8095 5 -0.244 65.89 0.0158 -0.0552 somatic
26 1029_01S chr12 18084494 21478007 1029_01S-T1-TDNA-1_B23KFCWLT4_1 1029_01S-N1-BDNA-1_B23KGCJLT4_1 525 97 -0.0433 0.0253 0.536 789.0 0.1372 0.0247 1 0 del 2;4;5 0.0916 0.1851 0.495 5 -0.244 4.57 0.0244 0.0197 somatic
27 1029_01S chr12 21479181 38675805 1029_01S-T1-TDNA-1_B23KFCWLT4_1 1029_01S-N1-BDNA-1_B23KGCJLT4_1 1587 247 0.3283 0.3021 0.5243 909.5 0.1471 0.0292 5 2 amp 1;3;4;5 0.1598 0.1851 0.8631 5 -0.244 40.95 0.0183 -0.0583 somatic
28 1029_01S chr12 38677393 40466083 1029_01S-T1-TDNA-1_B23KFCWLT4_1 1029_01S-N1-BDNA-1_B23KGCJLT4_1 412 117 -0.118 -0.0587 0.5425 504.3 0.2203 0.0574 1 0 del 1;2;5 0.1385 0.1851 0.7483 5 -0.244 8.63 -0.0144 -0.0142 somatic
29 1029_01S chr12 40473085 49019304 1029_01S-T1-TDNA-1_B23KFCWLT4_1 1029_01S-N1-BDNA-1_B23KGCJLT4_1 1514 240 0.2437 0.2282 0.5335 1129.0 0.1789 0.0367 5 2 amp 1;3;4 0.1245 0.1851 0.6727 5 -0.244 30.02 -0.0034 0.0054 somatic
30 1029_01S chr12 49019304 49055079 1029_01S-T1-TDNA-1_B23KFCWLT4_1 1029_01S-N1-BDNA-1_B23KGCJLT4_1 625 17 -0.45 -0.3671 0.5129 25792.0 0.0706 0.0051 0 0 del 1;2;3;4;5 0.1851 0.1851 1.0 5 -0.244 35.12 -0.1546 0.0466 somatic
31 1029_01S chr12 49055218 57089372 1029_01S-T1-TDNA-1_B23KFCWLT4_1 1029_01S-N1-BDNA-1_B23KGCJLT4_1 3630 441 0.2248 0.2218 0.5342 1385.2 0.1431 0.025 5 2 amp 1;5 0.1132 0.1851 0.6114 5 -0.244 42.87 -0.0015 0.0187 somatic
32 1029_01S chr12 57091072 57106634 1029_01S-T1-TDNA-1_B23KFCWLT4_1 1029_01S-N1-BDNA-1_B23KGCJLT4_1 155 6 -0.1625 -0.1746 0.5192 28538.5 0.0604 0.0042 0 0 del 2;3;4;5 0.1072 0.1851 0.579 5 -0.244 6.34 0.0011 0.0721 somatic
33 1029_01S chr12 57106642 62592765 1029_01S-T1-TDNA-1_B23KFCWLT4_1 1029_01S-N1-BDNA-1_B23KGCJLT4_1 1026 48 0.1249 0.107 0.5129 1907.5 0.0996 0.0133 5 2 amp 2;4 0.0564 0.1851 0.3046 5 -0.244 12.51 0.0078 -0.0187 somatic
34 1029_01S chr12 62648433 78181047 1029_01S-T1-TDNA-1_B23KFCWLT4_1 1029_01S-N1-BDNA-1_B23KGCJLT4_1 1794 183 0.3068 0.2662 0.527 830.0 0.1323 0.0272 5 2 amp 1;2;3;4 0.1499 0.1851 0.8095 5 -0.244 40.69 0.0142 -0.0421 somatic
35 1029_01S chr12 78185560 90953971 1029_01S-T1-TDNA-1_B23KFCWLT4_1 1029_01S-N1-BDNA-1_B23KGCJLT4_1 917 46 -0.0099 0.0707 0.5464 564.5 0.2179 0.0592 2 0 cn-loh 2;3;5 0.0762 0.1851 0.4113 5 -0.244 3.19 -0.0099 -0.0 somatic
36 1029_01S chr12 90954009 120090070 1029_01S-T1-TDNA-1_B23KFCWLT4_1 1029_01S-N1-BDNA-1_B23KGCJLT4_1 5027 665 0.3102 0.292 0.5263 873.0 0.1453 0.03 5 2 amp 1;2;3;4 0.1499 0.1851 0.8095 5 -0.244 68.9 0.0176 -0.0442 somatic
37 1029_01S chr12 120092964 121808375 1029_01S-T1-TDNA-1_B23KFCWLT4_1 1029_01S-N1-BDNA-1_B23KGCJLT4_1 653 108 0.2281 0.2072 0.523 1300.5 0.1169 0.0206 5 2 amp 1;4 0.109 0.1851 0.5887 5 -0.244 18.32 0.0097 -0.0238 somatic
38 1029_01S chr12 121809560 122138930 1029_01S-T1-TDNA-1_B23KFCWLT4_1 1029_01S-N1-BDNA-1_B23KGCJLT4_1 322 43 -0.063 -0.0641 0.5093 1113.5 0.0566 0.0076 0 0 del 2;3 0.0409 0.1851 0.2209 5 -0.244 3.54 -0.0028 0.0133 somatic
39 1029_01S chr12 122140956 132140208 1029_01S-T1-TDNA-1_B23KFCWLT4_1 1029_01S-N1-BDNA-1_B23KGCJLT4_1 1667 206 0.2587 0.262 0.5395 1117.0 0.1845 0.0411 5 2 amp 1;2;4 0.1343 0.1851 0.7256 5 -0.244 33.45 -0.0061 0.0225 somatic
40 1029_01S chr12 132140420 132696098 1029_01S-T1-TDNA-1_B23KFCWLT4_1 1029_01S-N1-BDNA-1_B23KGCJLT4_1 300 83 0.0102 0.006 0.5227 4291.0 0.1051 0.014 3 0 amp 2 0.0253 0.1851 0.1369 5 -0.244 2.18 -0.008 0.0036 somatic
41 1029_01S chr12 132701249 133234376 1029_01S-T1-TDNA-1_B23KFCWLT4_1 1029_01S-N1-BDNA-1_B23KGCJLT4_1 218 63 0.2429 0.2607 0.5359 1004.0 0.215 0.056 5 2 amp 1;3;4 0.1245 0.1851 0.6727 5 -0.244 11.53 -0.0042 0.0136 somatic
42 1029_01S chr13 19173833 114326203 1029_01S-T1-TDNA-1_B23KFCWLT4_1 1029_01S-N1-BDNA-1_B23KGCJLT4_1 8196 1172 0.3025 0.278 0.5294 863.8 0.1603 0.0333 5 2 amp 1;2;3;4 0.1499 0.1851 0.8095 5 -0.244 85.96 0.0099 -0.0319 somatic
43 1029_01S chr14 18601119 102897451 1029_01S-T1-TDNA-1_B23KFCWLT4_1 1029_01S-N1-BDNA-1_B23KGCJLT4_1 11257 1759 0.257 0.2502 0.5332 911.0 0.1591 0.0335 5 2 amp 1;3;5 0.1287 0.1851 0.6954 5 -0.244 86.12 0.0023 -0.0015 somatic
44 1029_01S chr14 102903206 102911297 1029_01S-T1-TDNA-1_B23KFCWLT4_1 1029_01S-N1-BDNA-1_B23KGCJLT4_1 71 1 -0.3298 -0.2638 0.5236 26596.0 0.0732 0 0 del 1;2;3;4;5 0.1851 0.1851 1.0 5 -0.244 8.67 -0.0344 0.0 somatic
45 1029_01S chr14 102911297 104112023 1029_01S-T1-TDNA-1_B23KFCWLT4_1 1029_01S-N1-BDNA-1_B23KGCJLT4_1 419 74 0.1522 0.1509 0.5454 760.0 0.1824 0.0356 4 1 amp 1;3 0.0935 0.1851 0.505 5 -0.244 10.47 0.0233 -0.0183 somatic
46 1029_01S chr14 104112499 105604986 1029_01S-T1-TDNA-1_B23KFCWLT4_1 1029_01S-N1-BDNA-1_B23KGCJLT4_1 603 137 -0.0594 -0.0651 0.5254 1284.5 0.1263 0.0236 1 0 del 1 0.0779 0.1851 0.421 5 -0.244 5.31 -0.0021 -0.0017 somatic
47 1029_01S chr14 105626098 106117340 1029_01S-T1-TDNA-1_B23KFCWLT4_1 1029_01S-N1-BDNA-1_B23KGCJLT4_1 431 41 -0.4153 -0.43 0.6049 27386.0 0.1038 0.0126 0 0 del 1;2;3;4;5 0.1851 0.1851 1.0 5 -0.244 28.06 -0.1199 0.4211 somatic
48 1029_01S chr14 106117354 106874851 1029_01S-T1-TDNA-1_B23KFCWLT4_1 1029_01S-N1-BDNA-1_B23KGCJLT4_1 164 37 0.1335 0.1779 0.6177 5055.0 0.1393 0.0201 3 0 amp 1;2;4;5 0.1696 0.1851 0.916 5 -0.244 9.96 0.0161 -0.0093 somatic
49 1029_01S chr15 20535569 34347974 1029_01S-T1-TDNA-1_B23KFCWLT4_1 1029_01S-N1-BDNA-1_B23KGCJLT4_1 1643 244 0.3428 0.3382 0.5302 1201.0 0.1234 0.0204 5 2 amp 1;2;4;5 0.1696 0.1851 0.916 5 -0.244 43.6 0.0158 -0.0375 somatic
50 1029_01S chr15 34347910 101819015 1029_01S-T1-TDNA-1_B23KFCWLT4_1 1029_01S-N1-BDNA-1_B23KGCJLT4_1 14434 2042 0.2308 0.2266 0.5184 1264.0 0.089 0.0121 5 2 amp 2;3;4;5 0.1072 0.1851 0.579 5 -0.244 86.81 0.0157 -0.0412 somatic
51 1029_01S chr16 47432 3851063 1029_01S-T1-TDNA-1_B23KFCWLT4_1 1029_01S-N1-BDNA-1_B23KGCJLT4_1 3122 401 -0.0136 -0.0374 0.5407 1372.0 0.1223 0.0218 2 0 cn-loh 2;3;4 0.0719 0.1851 0.3886 5 -0.244 8.69 -0.0136 -0.0025 somatic
52 1029_01S chr16 3862047 11254505 1029_01S-T1-TDNA-1_B23KFCWLT4_1 1029_01S-N1-BDNA-1_B23KGCJLT4_1 1141 199 0.1892 0.162 0.5186 973.0 0.0892 0.0146 5 2 amp 2;4;5 0.0916 0.1851 0.495 5 -0.244 20.05 0.0034 -0.0318 somatic
53 1029_01S chr16 11254505 11255945 1029_01S-T1-TDNA-1_B23KFCWLT4_1 1029_01S-N1-BDNA-1_B23KGCJLT4_1 30 1 -0.3255 -0.309 0.5182 25901.0 0.037 0 0 del 1;2;3;4;5 0.1851 0.1851 1.0 5 -0.244 5.56 -0.0301 0.0 somatic
54 1029_01S chr16 11255945 27340324 1029_01S-T1-TDNA-1_B23KFCWLT4_1 1029_01S-N1-BDNA-1_B23KGCJLT4_1 2694 365 0.3157 0.3241 0.5329 1153.5 0.1481 0.0309 5 2 amp 1;3;4;5 0.1598 0.1851 0.8631 5 -0.244 51.51 0.0057 -0.0208 somatic
55 1029_01S chr16 27341015 27362315 1029_01S-T1-TDNA-1_B23KFCWLT4_1 1029_01S-N1-BDNA-1_B23KGCJLT4_1 58 5 0.1154 0.084 0.5236 4765.0 0.1094 0.0104 6 2 amp 2;3 0.0409 0.1851 0.2209 5 -0.244 2.8 0.002 0.0073 somatic
56 1029_01S chr16 27362203 27364715 1029_01S-T1-TDNA-1_B23KFCWLT4_1 1029_01S-N1-BDNA-1_B23KGCJLT4_1 66 14 -0.5485 -0.5038 0.5222 33772.0 0.0587 0.0033 0 0 del 1;2;3;4;5 0.1851 0.1851 1.0 5 -0.244 13.94 -0.2531 0.0845 somatic
57 1029_01S chr16 27364715 31150088 1029_01S-T1-TDNA-1_B23KFCWLT4_1 1029_01S-N1-BDNA-1_B23KGCJLT4_1 1720 58 0.1696 0.1641 0.5348 1683.5 0.1176 0.0154 6 2 amp 4;5 0.0663 0.1851 0.3581 5 -0.244 22.12 -0.01 0.0028 somatic
58 1029_01S chr16 31180132 88038051 1029_01S-T1-TDNA-1_B23KFCWLT4_1 1029_01S-N1-BDNA-1_B23KGCJLT4_1 7081 1299 0.2566 0.248 0.529 1202.5 0.1354 0.0236 5 2 amp 1;3;5 0.1287 0.1851 0.6954 5 -0.244 68.12 0.0019 -0.0149 somatic
59 1029_01S chr16 88072014 90075935 1029_01S-T1-TDNA-1_B23KFCWLT4_1 1029_01S-N1-BDNA-1_B23KGCJLT4_1 1161 219 0.0623 0.0284 0.522 1370.0 0.0952 0.0112 3 1 amp 2;3;5 0.0762 0.1851 0.4113 5 -0.244 7.23 0.0084 -0.0069 somatic
60 1029_01S chr17 137555 8382265 1029_01S-T1-TDNA-1_B23KFCWLT4_1 1029_01S-N1-BDNA-1_B23KGCJLT4_1 4070 746 0.157 0.154 0.5347 1317.0 0.1497 0.027 6 2 amp 2;5 0.0606 0.1851 0.3273 5 -0.244 32.65 -0.0081 0.0088 somatic
61 1029_01S chr17 8382213 16070525 1029_01S-T1-TDNA-1_B23KFCWLT4_1 1029_01S-N1-BDNA-1_B23KGCJLT4_1 1392 238 0.3464 0.3485 0.5352 1285.0 0.1679 0.0333 5 2 amp 1;2;4;5 0.1696 0.1851 0.916 5 -0.244 40.7 0.0194 -0.0166 somatic
62 1029_01S chr17 16071357 50508772 1029_01S-T1-TDNA-1_B23KFCWLT4_1 1029_01S-N1-BDNA-1_B23KGCJLT4_1 10536 1362 0.1996 0.1925 0.5309 1330.0 0.1009 0.0152 5 2 amp 1;2 0.1033 0.1851 0.5579 5 -0.244 64.9 -0.0082 0.0124 somatic
63 1029_01S chr17 50516513 50692273 1029_01S-T1-TDNA-1_B23KFCWLT4_1 1029_01S-N1-BDNA-1_B23KGCJLT4_1 282 58 0.0322 0.0025 0.5231 1858.0 0.1667 0.0342 5 0 amp 3 0.0155 0.1851 0.084 5 -0.244 2.37 -0.0011 -0.0021 somatic
64 1029_01S chr17 50695987 68996051 1029_01S-T1-TDNA-1_B23KFCWLT4_1 1029_01S-N1-BDNA-1_B23KGCJLT4_1 3587 268 0.3174 0.3094 0.5223 1242.0 0.1057 0.0164 5 2 amp 1;2;3;5 0.1541 0.1851 0.8323 5 -0.244 59.42 0.0174 -0.0587 somatic
65 1029_01S chr17 69007725 80945786 1029_01S-T1-TDNA-1_B23KFCWLT4_1 1029_01S-N1-BDNA-1_B23KGCJLT4_1 3172 518 0.195 0.1988 0.5338 1178.7 0.1406 0.0213 6 2 amp 2;3;4 0.0719 0.1851 0.3886 5 -0.244 35.09 0.0011 -0.0138 somatic
66 1029_01S chr17 80947169 83094575 1029_01S-T1-TDNA-1_B23KFCWLT4_1 1029_01S-N1-BDNA-1_B23KGCJLT4_1 1080 260 0.1025 0.1066 0.5375 991.0 0.1626 0.0305 3 1 amp 1;2;5 0.1385 0.1851 0.7483 5 -0.244 12.08 0.0059 -0.0048 somatic
67 1029_01S chr18 47389 80247372 1029_01S-T1-TDNA-1_B23KFCWLT4_1 1029_01S-N1-BDNA-1_B23KGCJLT4_1 7001 915 0.3564 0.3143 0.5292 1011.0 0.1416 0.029 5 2 amp 1;2;3;4;5 0.1851 0.1851 1.0 5 -0.244 93.43 0.0029 -0.0533 somatic
68 1029_01S chr19 110681 5229719 1029_01S-T1-TDNA-1_B23KFCWLT4_1 1029_01S-N1-BDNA-1_B23KGCJLT4_1 2939 897 0.0179 -0.0049 0.5279 943.0 0.1191 0.0207 3 0 amp 4 0.031 0.1851 0.1677 5 -0.244 8.15 -0.0043 -0.006 somatic
69 1029_01S chr19 5231283 51029517 1029_01S-T1-TDNA-1_B23KFCWLT4_1 1029_01S-N1-BDNA-1_B23KGCJLT4_1 16989 2761 0.1017 0.0835 0.5288 1132.5 0.1161 0.0176 6 2 amp 2;3 0.0409 0.1851 0.2209 5 -0.244 43.74 -0.0117 0.016 somatic
70 1029_01S chr19 51030792 58571441 1029_01S-T1-TDNA-1_B23KFCWLT4_1 1029_01S-N1-BDNA-1_B23KGCJLT4_1 3093 902 0.1839 0.1793 0.5424 1305.0 0.1457 0.0258 6 2 amp 2;3;4 0.0719 0.1851 0.3886 5 -0.244 34.51 -0.01 0.022 somatic
71 1029_01S chr2 41522 238848702 1029_01S-T1-TDNA-1_B23KFCWLT4_1 1029_01S-N1-BDNA-1_B23KGCJLT4_1 32742 4106 0.2759 0.2555 0.5317 1180.5 0.1255 0.0214 5 2 amp 1;2;5 0.1385 0.1851 0.7483 5 -0.244 157.05 0.0035 -0.0111 somatic
72 1029_01S chr2 239048132 241816347 1029_01S-T1-TDNA-1_B23KFCWLT4_1 1029_01S-N1-BDNA-1_B23KGCJLT4_1 893 238 0.1378 0.1327 0.5324 1118.0 0.1155 0.0228 6 2 amp 3;5 0.0508 0.1851 0.2744 5 -0.244 13.73 -0.0018 0.0136 somatic
73 1029_01S chr2 241816416 241873273 1029_01S-T1-TDNA-1_B23KFCWLT4_1 1029_01S-N1-BDNA-1_B23KGCJLT4_1 65 23 -0.2293 -0.2552 0.5168 3007.0 0.0853 0.0069 0 0 del 1;2;3;4;5 0.1851 0.1851 1.0 5 -0.244 5.82 0.0661 0.0527 somatic
74 1029_01S chr20 87677 62304585 1029_01S-T1-TDNA-1_B23KFCWLT4_1 1029_01S-N1-BDNA-1_B23KGCJLT4_1 9218 1245 0.2787 0.2697 0.5278 1122.0 0.1366 0.0264 5 2 amp 1;2;5 0.1385 0.1851 0.7483 5 -0.244 84.01 0.0063 -0.0273 somatic
75 1029_01S chr20 62306138 64273595 1029_01S-T1-TDNA-1_B23KFCWLT4_1 1029_01S-N1-BDNA-1_B23KGCJLT4_1 1029 231 0.0401 0.0407 0.5277 1283.0 0.1432 0.0241 6 0 amp 3 0.0155 0.1851 0.084 5 -0.244 5.65 -0.0041 -0.0019 somatic
76 1029_01S chr21 5117108 25606568 1029_01S-T1-TDNA-1_B23KFCWLT4_1 1029_01S-N1-BDNA-1_B23KGCJLT4_1 463 61 0.1508 0.1879 0.6035 906.0 0.2021 0.0456 4 0 amp 2;3;4;5 0.1072 0.1851 0.579 5 -0.244 13.59 0.0039 0.0013 somatic
77 1029_01S chr21 25606549 41464747 1029_01S-T1-TDNA-1_B23KFCWLT4_1 1029_01S-N1-BDNA-1_B23KGCJLT4_1 2196 256 0.3672 0.3478 0.5298 1030.5 0.1642 0.0322 5 2 amp 1;2;3;4;5 0.1851 0.1851 1.0 5 -0.244 53.89 0.0137 -0.0507 somatic
78 1029_01S chr21 41464747 41741797 1029_01S-T1-TDNA-1_B23KFCWLT4_1 1029_01S-N1-BDNA-1_B23KGCJLT4_1 271 51 -0.0563 -0.0332 0.5181 16171.0 0.0703 0.0064 1 0 del 4;5 0.0663 0.1851 0.3581 5 -0.244 3.21 -0.0077 -0.0024 somatic
79 1029_01S chr21 41741877 46664423 1029_01S-T1-TDNA-1_B23KFCWLT4_1 1029_01S-N1-BDNA-1_B23KGCJLT4_1 1672 458 0.2083 0.2002 0.5388 1091.0 0.1829 0.0412 6 2 amp 1 0.0779 0.1851 0.421 5 -0.244 27.85 -0.0007 -0.0037 somatic
80 1029_01S chr22 15528158 22687308 1029_01S-T1-TDNA-1_B23KFCWLT4_1 1029_01S-N1-BDNA-1_B23KGCJLT4_1 1758 335 0.141 0.1299 0.5316 1315.5 0.1169 0.0163 6 2 amp 3;5 0.0508 0.1851 0.2744 5 -0.244 19.3 0.0014 0.0123 somatic
81 1029_01S chr22 22687229 23261574 1029_01S-T1-TDNA-1_B23KFCWLT4_1 1029_01S-N1-BDNA-1_B23KGCJLT4_1 362 63 -0.1492 -0.1391 0.5416 10980.0 0.0926 0.0103 1 0 del 1;3;4;5 0.1598 0.1851 0.8631 5 -0.244 9.61 -0.0291 -0.0149 somatic
82 1029_01S chr22 23261794 23309400 1029_01S-T1-TDNA-1_B23KFCWLT4_1 1029_01S-N1-BDNA-1_B23KGCJLT4_1 312 52 -0.4445 -0.3986 0.5132 31863.0 0.0536 0.0031 0 0 del 1;2;3;4;5 0.1851 0.1851 1.0 5 -0.244 24.53 -0.1491 0.0483 somatic
83 1029_01S chr22 23309393 23838458 1029_01S-T1-TDNA-1_B23KFCWLT4_1 1029_01S-N1-BDNA-1_B23KGCJLT4_1 194 71 0.0364 0.0141 0.5261 4425.5 0.0682 0.0068 4 0 amp 2 0.0253 0.1851 0.1369 5 -0.244 2.79 0.0003 -0.0064 somatic
84 1029_01S chr22 23838540 36870534 1029_01S-T1-TDNA-1_B23KFCWLT4_1 1029_01S-N1-BDNA-1_B23KGCJLT4_1 2771 549 0.2299 0.2205 0.5273 1243.0 0.1356 0.0232 5 2 amp 1;5 0.1132 0.1851 0.6114 5 -0.244 38.24 0.0036 -0.0102 somatic
85 1029_01S chr22 36871620 36936667 1029_01S-T1-TDNA-1_B23KFCWLT4_1 1029_01S-N1-BDNA-1_B23KGCJLT4_1 81 8 -0.0562 -0.0219 0.5122 1933.0 0.0526 0.0 1 0 del 3;4 0.0466 0.1851 0.2517 5 -0.244 1.6 -0.0222 -0.017 somatic
86 1029_01S chr22 36937334 36938654 1029_01S-T1-TDNA-1_B23KFCWLT4_1 1029_01S-N1-BDNA-1_B23KGCJLT4_1 36 0 -0.7253 -0.6617 0 0 del 1;2;3;4;5 0.1851 0.1851 1.0 5 -0.244 13.58 -0.4299 0.0 somatic
87 1029_01S chr22 36991142 50210907 1029_01S-T1-TDNA-1_B23KFCWLT4_1 1029_01S-N1-BDNA-1_B23KGCJLT4_1 3300 533 0.1477 0.1444 0.5315 1070.0 0.1536 0.0276 6 2 amp 2;4 0.0564 0.1851 0.3046 5 -0.244 27.37 -0.0065 0.0003 somatic
88 1029_01S chr22 50215691 50782316 1029_01S-T1-TDNA-1_B23KFCWLT4_1 1029_01S-N1-BDNA-1_B23KGCJLT4_1 556 69 0.019 0.0159 0.5396 1607.0 0.1442 0.0235 3 0 amp 3;4 0.0466 0.1851 0.2517 5 -0.244 3.68 -0.0142 0.002 somatic
89 1029_01S chr3 319726 3026195 1029_01S-T1-TDNA-1_B23KFCWLT4_1 1029_01S-N1-BDNA-1_B23KGCJLT4_1 115 21 0.1254 0.0713 0.5347 637.0 0.223 0.0562 6 2 amp 3;5 0.0508 0.1851 0.2744 5 -0.244 4.44 -0.0142 0.0151 somatic
90 1029_01S chr3 3026187 12735626 1029_01S-T1-TDNA-1_B23KFCWLT4_1 1029_01S-N1-BDNA-1_B23KGCJLT4_1 2064 284 0.3666 0.3818 0.5396 1353.5 0.1001 0.0203 5 2 amp 1;2;3;4;5 0.1851 0.1851 1.0 5 -0.244 52.43 0.0131 -0.0081 somatic
91 1029_01S chr3 12736554 47381198 1029_01S-T1-TDNA-1_B23KFCWLT4_1 1029_01S-N1-BDNA-1_B23KGCJLT4_1 4927 713 0.2862 0.2783 0.5283 1022.0 0.1681 0.0333 5 2 amp 1;2;5 0.1385 0.1851 0.7483 5 -0.244 63.09 0.0138 -0.0265 somatic
92 1029_01S chr3 47396099 52907317 1029_01S-T1-TDNA-1_B23KFCWLT4_1 1029_01S-N1-BDNA-1_B23KGCJLT4_1 3409 62 0.0847 0.0973 0.5167 1207.0 0.1216 0.0139 5 2 amp 2;3 0.0409 0.1851 0.2209 5 -0.244 15.47 -0.0012 0.0053 somatic
93 1029_01S chr3 52907554 78639917 1029_01S-T1-TDNA-1_B23KFCWLT4_1 1029_01S-N1-BDNA-1_B23KGCJLT4_1 2520 387 0.3593 0.3531 0.5589 1077.0 0.1526 0.028 6 2 amp 1;2;5 0.1385 0.1851 0.7483 5 -0.244 57.63 0.0064 -0.0054 somatic
94 1029_01S chr3 78646079 198169878 1029_01S-T1-TDNA-1_B23KFCWLT4_1 1029_01S-N1-BDNA-1_B23KGCJLT4_1 13902 1800 0.3042 0.2837 0.5279 1019.0 0.1436 0.0272 5 2 amp 1;2;3;4 0.1499 0.1851 0.8095 5 -0.244 112.47 0.0116 -0.0358 somatic
95 1029_01S chr4 53399 2462975 1029_01S-T1-TDNA-1_B23KFCWLT4_1 1029_01S-N1-BDNA-1_B23KGCJLT4_1 1045 124 0.0587 0.0332 0.5295 1212.0 0.1335 0.0219 4 1 amp 3;4 0.0466 0.1851 0.2517 5 -0.244 6.7 -0.007 0.0061 somatic
96 1029_01S chr4 2490400 165210213 1029_01S-T1-TDNA-1_B23KFCWLT4_1 1029_01S-N1-BDNA-1_B23KGCJLT4_1 14822 2016 0.2783 0.2566 0.5374 875.8 0.1589 0.033 5 2 amp 1;4;5 0.1442 0.1851 0.7791 5 -0.244 107.0 -0.0043 0.0042 somatic
97 1029_01S chr4 165219899 176193047 1029_01S-T1-TDNA-1_B23KFCWLT4_1 1029_01S-N1-BDNA-1_B23KGCJLT4_1 774 169 0.1241 0.1341 0.5364 640.7 0.2132 0.0541 6 2 amp 3;5 0.0508 0.1851 0.2744 5 -0.244 11.63 -0.0155 0.022 somatic
98 1029_01S chr4 176195329 190174838 1029_01S-T1-TDNA-1_B23KFCWLT4_1 1029_01S-N1-BDNA-1_B23KGCJLT4_1 1126 229 0.3659 0.3555 0.5251 1119.0 0.148 0.0309 5 2 amp 1;2;3;4;5 0.1851 0.1851 1.0 5 -0.244 38.47 0.0124 -0.0685 somatic
99 1029_01S chr5 113220 1235686 1029_01S-T1-TDNA-1_B23KFCWLT4_1 1029_01S-N1-BDNA-1_B23KGCJLT4_1 404 164 0.1903 0.2004 0.5402 1392.3 0.1164 0.015 6 2 amp 2;3;4 0.0719 0.1851 0.3886 5 -0.244 13.05 -0.0036 0.0138 somatic
100 1029_01S chr5 1237904 1474066 1029_01S-T1-TDNA-1_B23KFCWLT4_1 1029_01S-N1-BDNA-1_B23KGCJLT4_1 161 30 0.0567 -0.0508 0.5155 867.5 0.108 0.0192 5 2 amp 4 0.031 0.1851 0.1677 5 -0.244 2.32 -0.009 0.0053 somatic
101 1029_01S chr5 1474016 35646761 1029_01S-T1-TDNA-1_B23KFCWLT4_1 1029_01S-N1-BDNA-1_B23KGCJLT4_1 1811 254 0.4157 0.3686 0.5317 1163.0 0.1915 0.0381 5 2 amp 1;2;3;4;5 0.1851 0.1851 1.0 5 -0.244 55.43 0.0622 -0.0416 somatic
102 1029_01S chr5 35646701 140539462 1029_01S-T1-TDNA-1_B23KFCWLT4_1 1029_01S-N1-BDNA-1_B23KGCJLT4_1 10826 1441 0.2759 0.248 0.5267 861.0 0.1599 0.0357 5 2 amp 1;2;4 0.1343 0.1851 0.7256 5 -0.244 90.04 0.0111 -0.0322 somatic
103 1029_01S chr5 140542166 150051793 1029_01S-T1-TDNA-1_B23KFCWLT4_1 1029_01S-N1-BDNA-1_B23KGCJLT4_1 2314 356 0.3504 0.3421 0.5247 1756.5 0.1224 0.0189 5 2 amp 1;2;4;5 0.1696 0.1851 0.916 5 -0.244 52.8 0.0234 -0.0556 somatic
104 1029_01S chr5 150051724 151108563 1029_01S-T1-TDNA-1_B23KFCWLT4_1 1029_01S-N1-BDNA-1_B23KGCJLT4_1 527 93 0.1508 0.1366 0.5195 1548.0 0.0818 0.0079 5 2 amp 2;3;4 0.0719 0.1851 0.3886 5 -0.244 10.93 0.003 -0.0072 somatic
105 1029_01S chr5 151109740 176568866 1029_01S-T1-TDNA-1_B23KFCWLT4_1 1029_01S-N1-BDNA-1_B23KGCJLT4_1 2286 415 0.3656 0.3571 0.5272 1038.5 0.1495 0.0304 5 2 amp 1;2;3;4;5 0.1851 0.1851 1.0 5 -0.244 54.79 0.0121 -0.061 somatic
106 1029_01S chr5 176568924 181260807 1029_01S-T1-TDNA-1_B23KFCWLT4_1 1029_01S-N1-BDNA-1_B23KGCJLT4_1 1596 348 0.1478 0.1234 0.5268 1523.0 0.1136 0.0169 6 2 amp 3;5 0.0508 0.1851 0.2744 5 -0.244 19.04 0.0082 -0.0055 somatic
107 1029_01S chr6 304553 29723008 1029_01S-T1-TDNA-1_B23KFCWLT4_1 1029_01S-N1-BDNA-1_B23KGCJLT4_1 3384 560 0.3439 0.3329 0.5266 1278.0 0.1237 0.0218 5 2 amp 1;2;4;5 0.1696 0.1851 0.916 5 -0.244 62.72 0.0169 -0.0512 somatic
108 1029_01S chr6 29723297 29945675 1029_01S-T1-TDNA-1_B23KFCWLT4_1 1029_01S-N1-BDNA-1_B23KGCJLT4_1 124 111 0.0124 -0.039 0.53 13836.8 0.1169 0.0161 2 0 cn-loh 2;4 0.0564 0.1851 0.3046 5 -0.244 3.55 0.0124 0.0005 somatic
109 1029_01S chr6 29945564 34091983 1029_01S-T1-TDNA-1_B23KFCWLT4_1 1029_01S-N1-BDNA-1_B23KGCJLT4_1 3030 864 0.1637 0.1776 0.5507 2546.8 0.094 0.0116 4 1 amp 1;4 0.109 0.1851 0.5887 5 -0.244 32.49 0.0145 -0.0095 somatic
110 1029_01S chr6 34091996 137882954 1029_01S-T1-TDNA-1_B23KFCWLT4_1 1029_01S-N1-BDNA-1_B23KGCJLT4_1 12893 1389 0.2642 0.2384 0.5239 971.0 0.1327 0.0266 5 2 amp 1;3;5 0.1287 0.1851 0.6954 5 -0.244 93.95 0.0095 -0.0379 somatic
111 1029_01S chr6 137882954 170584636 1029_01S-T1-TDNA-1_B23KFCWLT4_1 1029_01S-N1-BDNA-1_B23KGCJLT4_1 4492 705 0.3657 0.3429 0.5265 1383.0 0.1251 0.0214 5 2 amp 1;2;3;4;5 0.1851 0.1851 1.0 5 -0.244 76.79 0.0122 -0.0605 somatic
112 1029_01S chr7 193154 5526610 1029_01S-T1-TDNA-1_B23KFCWLT4_1 1029_01S-N1-BDNA-1_B23KGCJLT4_1 1124 273 0.1302 0.1294 0.5254 1082.5 0.1554 0.0245 6 2 amp 3;4 0.0466 0.1851 0.2517 5 -0.244 14.14 0.0017 -0.0079 somatic
113 1029_01S chr7 5526610 5529981 1029_01S-T1-TDNA-1_B23KFCWLT4_1 1029_01S-N1-BDNA-1_B23KGCJLT4_1 49 8 -0.3732 -0.2495 0.5216 26993.0 0.0385 0.0014 0 0 del 1;2;3;4;5 0.1851 0.1851 1.0 5 -0.244 8.18 -0.0778 0.0816 somatic
114 1029_01S chr7 5530504 55151403 1029_01S-T1-TDNA-1_B23KFCWLT4_1 1029_01S-N1-BDNA-1_B23KGCJLT4_1 5497 863 0.3293 0.2955 0.5314 1089.0 0.1108 0.0173 5 2 amp 1;2;4;5 0.1696 0.1851 0.916 5 -0.244 76.71 0.0023 -0.0338 somatic
115 1029_01S chr7 55152491 55203032 1029_01S-T1-TDNA-1_B23KFCWLT4_1 1029_01S-N1-BDNA-1_B23KGCJLT4_1 336 1 -0.0563 0.0051 0.5053 42856.0 0.0828 1 0 del 2;3;5 0.0762 0.1851 0.4113 5 -0.244 3.22 -0.0003 0.0 somatic
116 1029_01S chr7 55203032 129213565 1029_01S-T1-TDNA-1_B23KFCWLT4_1 1029_01S-N1-BDNA-1_B23KGCJLT4_1 9248 1033 0.2206 0.2086 0.5415 1069.0 0.1298 0.0243 6 2 amp 3;4;5 0.0819 0.1851 0.4421 5 -0.244 67.57 0.0019 0.0011 somatic
117 1029_01S chr7 129225026 159144810 1029_01S-T1-TDNA-1_B23KFCWLT4_1 1029_01S-N1-BDNA-1_B23KGCJLT4_1 5235 696 0.2821 0.2656 0.5358 1359.0 0.155 0.0305 5 2 amp 1;4;5 0.1442 0.1851 0.7791 5 -0.244 64.41 -0.0005 0.0031 somatic
118 1029_01S chr8 166190 8797493 1029_01S-T1-TDNA-1_B23KFCWLT4_1 1029_01S-N1-BDNA-1_B23KGCJLT4_1 573 180 0.4166 0.3834 0.5527 1388.0 0.1696 0.0317 6 2 amp 1;2;3;5 0.1541 0.1851 0.8323 5 -0.244 32.02 0.029 -0.0465 somatic
119 1029_01S chr8 8797407 9020497 1029_01S-T1-TDNA-1_B23KFCWLT4_1 1029_01S-N1-BDNA-1_B23KGCJLT4_1 84 0 -0.1188 -0.0223 1 0 del 1;3;4;5 0.1598 0.1851 0.8631 5 -0.244 3.4 0.0013 0.0 somatic
120 1029_01S chr8 9029793 32607303 1029_01S-T1-TDNA-1_B23KFCWLT4_1 1029_01S-N1-BDNA-1_B23KGCJLT4_1 3005 625 0.2691 0.2553 0.5325 1019.0 0.1548 0.0324 5 2 amp 1;2;4 0.1343 0.1851 0.7256 5 -0.244 46.69 0.0043 -0.0067 somatic
121 1029_01S chr8 32607423 36931147 1029_01S-T1-TDNA-1_B23KFCWLT4_1 1029_01S-N1-BDNA-1_B23KGCJLT4_1 1146 136 0.4516 0.4673 0.5177 14238.0 0.0859 0.0104 6 3 amp 1;2;3;4;5 0.1851 0.1851 1.0 5 -0.244 47.77 -0.0029 0.0641 somatic
122 1029_01S chr8 36932878 39914015 1029_01S-T1-TDNA-1_B23KFCWLT4_1 1029_01S-N1-BDNA-1_B23KGCJLT4_1 1127 129 0.0832 0.0753 0.5168 1561.0 0.0568 0.0057 5 2 amp 2;3 0.0409 0.1851 0.2209 5 -0.244 8.86 -0.0027 0.0085 somatic
123 1029_01S chr8 39917832 81280730 1029_01S-T1-TDNA-1_B23KFCWLT4_1 1029_01S-N1-BDNA-1_B23KGCJLT4_1 3544 438 0.3478 0.3144 0.5249 1088.5 0.1123 0.0194 5 2 amp 1;2;4;5 0.1696 0.1851 0.916 5 -0.244 64.79 0.0208 -0.0599 somatic
124 1029_01S chr8 81283306 109245504 1029_01S-T1-TDNA-1_B23KFCWLT4_1 1029_01S-N1-BDNA-1_B23KGCJLT4_1 2712 430 0.2371 0.2173 0.5311 812.0 0.1399 0.0266 5 2 amp 1;2;3 0.1188 0.1851 0.6419 5 -0.244 38.99 0.0005 -0.0044 somatic
125 1029_01S chr8 109270977 116866793 1029_01S-T1-TDNA-1_B23KFCWLT4_1 1029_01S-N1-BDNA-1_B23KGCJLT4_1 552 86 0.0045 0.0246 0.5272 781.0 0.1862 0.0448 2 0 cn-loh 2;3 0.0409 0.1851 0.2209 5 -0.244 2.22 0.0045 -0.0015 somatic
126 1029_01S chr8 116868678 127733056 1029_01S-T1-TDNA-1_B23KFCWLT4_1 1029_01S-N1-BDNA-1_B23KGCJLT4_1 982 142 0.3391 0.3051 0.5394 929.0 0.2113 0.061 5 2 amp 1;2;4;5 0.1696 0.1851 0.916 5 -0.244 33.49 0.0121 -0.0037 somatic
127 1029_01S chr8 127734016 127740870 1029_01S-T1-TDNA-1_B23KFCWLT4_1 1029_01S-N1-BDNA-1_B23KGCJLT4_1 147 10 -0.6757 -0.5898 0.5122 49183.0 0.0349 0.0009 0 0 del 1;2;3;4;5 0.1851 0.1851 1.0 5 -0.244 25.57 -0.3803 0.0452 somatic
128 1029_01S chr8 127741431 130126122 1029_01S-T1-TDNA-1_B23KFCWLT4_1 1029_01S-N1-BDNA-1_B23KGCJLT4_1 117 10 0.227 0.2538 0.5408 1019.0 0.2474 0.05 6 2 amp 3;4;5 0.0819 0.1851 0.4421 5 -0.244 7.77 0.0083 -0.0023 somatic
129 1029_01S chr8 130127915 141488626 1029_01S-T1-TDNA-1_B23KFCWLT4_1 1029_01S-N1-BDNA-1_B23KGCJLT4_1 998 243 0.4014 0.3652 0.5402 1258.0 0.1914 0.0418 5 2 amp 1;2;3;4;5 0.1851 0.1851 1.0 5 -0.244 40.09 0.0479 -0.0065 somatic
130 1029_01S chr8 141490083 145054212 1029_01S-T1-TDNA-1_B23KFCWLT4_1 1029_01S-N1-BDNA-1_B23KGCJLT4_1 1671 301 0.0583 0.0599 0.5272 1705.0 0.1272 0.0182 3 1 amp 2;4;5 0.0916 0.1851 0.495 5 -0.244 8.74 -0.0063 0.0019 somatic
131 1029_01S chr9 15056 107490020 1029_01S-T1-TDNA-1_B23KFCWLT4_1 1029_01S-N1-BDNA-1_B23KGCJLT4_1 10812 1173 0.3153 0.2989 0.531 1360.5 0.114 0.0186 5 2 amp 1;3;4;5 0.1598 0.1851 0.8631 5 -0.244 102.85 0.0053 -0.0265 somatic
132 1029_01S chr9 107491016 127673311 1029_01S-T1-TDNA-1_B23KFCWLT4_1 1029_01S-N1-BDNA-1_B23KGCJLT4_1 2998 433 0.3621 0.3618 0.5265 1049.0 0.159 0.0314 5 2 amp 1;2;3;4;5 0.1851 0.1851 1.0 5 -0.244 62.08 0.0086 -0.0637 somatic
133 1029_01S chr9 127675786 133776113 1029_01S-T1-TDNA-1_B23KFCWLT4_1 1029_01S-N1-BDNA-1_B23KGCJLT4_1 2727 323 0.1838 0.1939 0.5225 1202.5 0.1083 0.0157 5 2 amp 2;4;5 0.0916 0.1851 0.495 5 -0.244 30.17 -0.002 -0.0136 somatic
134 1029_01S chr9 133777378 136493954 1029_01S-T1-TDNA-1_B23KFCWLT4_1 1029_01S-N1-BDNA-1_B23KGCJLT4_1 776 209 0.0662 0.052 0.5131 952.0 0.085 0.012 5 2 amp 4 0.031 0.1851 0.1677 5 -0.244 5.87 0.0005 -0.0031 somatic
135 1029_01S chr9 136494376 136497549 1029_01S-T1-TDNA-1_B23KFCWLT4_1 1029_01S-N1-BDNA-1_B23KGCJLT4_1 81 2 -0.8968 -0.7948 0.5278 27653.0 0.1419 0.0194 0 0 del 1;2;3;4;5 0.1851 0.1851 1.0 5 -0.244 25.19 -0.6014 0.0 somatic
136 1029_01S chr9 136497465 136524030 1029_01S-T1-TDNA-1_B23KFCWLT4_1 1029_01S-N1-BDNA-1_B23KGCJLT4_1 260 39 -0.4427 -0.4135 0.5104 11592.0 0.0803 0.0088 0 0 del 1;2;3;4;5 0.1851 0.1851 1.0 5 -0.244 22.29 -0.1473 0.0342 somatic
137 1029_01S chr9 136529043 138231128 1029_01S-T1-TDNA-1_B23KFCWLT4_1 1029_01S-N1-BDNA-1_B23KGCJLT4_1 1068 158 0.0551 0.052 0.5207 1246.7 0.1218 0.025 3 1 amp 4;5 0.0663 0.1851 0.3581 5 -0.244 6.05 0.008 -0.0039 somatic
138 1029_01S chrX 2853959 31266901 1029_01S-T1-TDNA-1_B23KFCWLT4_1 1029_01S-N1-BDNA-1_B23KGCJLT4_1 2318 2 -0.5667 -0.5789 0.6464 312.5 0.1652 0.0 4 0 amp 1;2;3 0.1188 0.1851 0.6419 5 -0.244 85.16 -0.7287 0.0 somatic
139 1029_01S chrX 31323548 152969479 1029_01S-T1-TDNA-1_B23KFCWLT4_1 1029_01S-N1-BDNA-1_B23KGCJLT4_1 12016 29 -0.6947 -0.7144 0.657 2823.0 0.1121 0.0124 4 0 amp 1 0.0779 0.1851 0.421 5 -0.244 237.89 -0.803 0.3437 somatic
140 1029_01S chrX 152970398 154556283 1029_01S-T1-TDNA-1_B23KFCWLT4_1 1029_01S-N1-BDNA-1_B23KGCJLT4_1 977 2 -0.8573 -0.8596 0.7038 3290.5 0.2082 0.0375 2 0 amp 1;2 0.1033 0.1851 0.5579 5 -0.244 83.64 -0.8573 0.0 somatic
141 1029_01S chrX 154556265 155545278 1029_01S-T1-TDNA-1_B23KFCWLT4_1 1029_01S-N1-BDNA-1_B23KGCJLT4_1 259 0 -0.5869 -0.6022 6 0 high-amp 4;5 0.0663 0.1851 0.3581 5 -0.244 29.48 -0.7665 0.0 somatic
142 1029_01S chrY 2786997 20779689 1029_01S-T1-TDNA-1_B23KFCWLT4_1 1029_01S-N1-BDNA-1_B23KGCJLT4_1 316 0 -0.6815 -0.7269 4 0 amp 3;4;5 0.0819 0.1851 0.4421 5 -0.244 37.81 -0.795 0.0 somatic
143 rows