File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/54/8fe3f3ff20b9b1454f8f6d332d066b/.command.log
Size
943 bytes
Task
SOMATIC_CNV_CALLING:SOMA_CNV_NORMALIZE (1029_0I-T1-TDNA-1_A23KCGYLT4_1)
Attempt

Content

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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/54/8fe3f3ff20b9b1454f8f6d332d066b/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/db/7492cb2c6d8ca8f5afc6b1e0f18450/norm_reference/sex_calls.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/54/8fe3f3ff20b9b1454f8f6d332d066b/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/98/ff943f76ed2fb50171554e7e4fe2dc/1029_0I-T1-TDNA-1_A23KCGYLT4_1_probes.tsv.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/db/7492cb2c6d8ca8f5afc6b1e0f18450/norm_reference/batch_reference.parquet
==> STAGING COMPLETE (5 inputs)

Loaded 472,386 probes for 1029_0I-T1-TDNA-1_A23KCGYLT4_1
  Sex homology mask: 1494 probes set to mask=2
  5-feature GAM: R²=0.8037
  Wrote 1029_0I-T1-TDNA-1_A23KCGYLT4_1_normalized.parquet
  Wrote feature stats to 1029_0I-T1-TDNA-1_A23KCGYLT4_1_gam_stats.json
  Done in 12.9s