Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_0I-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_0I-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_0I-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_0I-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 71393697 total, 51122 skipped (flags/unmapped)
Fragments: 35774401 total (35532995 tlen-paired, 3379 hash-paired, 353 singletons, 14132 discordant, 223542 orphans, 8834 too large [>5000 bp], 12447424 duplicates)
Reads: 76750069 total, 45754 skipped (flags/unmapped)
Fragments: 38463193 total (38202781 tlen-paired, 3588 hash-paired, 293 singletons, 12081 discordant, 244450 orphans, 11336 too large [>5000 bp], 13455405 duplicates)
Reads: 77658867 total, 42409 skipped (flags/unmapped)
Fragments: 38914644 total (38669405 tlen-paired, 3066 hash-paired, 366 singletons, 10377 discordant, 231430 orphans, 9483 too large [>5000 bp], 13294750 duplicates)
Reads: 84232878 total, 70981 skipped (flags/unmapped)
Fragments: 42277670 total (41670197 tlen-paired, 2419 hash-paired, 355 singletons, 114651 discordant, 490048 orphans, 48480 too large [>5000 bp], 14811643 duplicates)