.command.sh - Workdir - SOMATIC_CNV_CALLING:SOMA_CNV_EXPORT_VIEWER (1029_0I)

File Info

Filename: .command.sh
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2a/e7caa95422649b9693afe2bf575ae0/.command.sh
Size: 261 bytes
Task: SOMATIC_CNV_CALLING:SOMA_CNV_EXPORT_VIEWER (1029_0I)
Attempt

Content

#!/bin/bash -Ceuo pipefail
python /usr/local/bin/export_viewer.py \
    --probe-agg 1029_0I_probe_agg.tsv.gz \
    --pairs test_pairs.tsv \
    --segments 1029_0I_segments.tsv \
    --output-dir viewer \
    --specimens-file <(echo "1029_0I") \
    --workers 4