.command.err - Workdir - SOMATIC_CNV_CALLING:SOMA_CNV_NORMALIZE (1029_0W2-N1-BDNA-1_B23KGCJLT4_1)

File Info

Filename: .command.err
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3e/e2c5f5816a2582d524ca84aee35c00/.command.err
Size: 504 bytes
Task: SOMATIC_CNV_CALLING:SOMA_CNV_NORMALIZE (1029_0W2-N1-BDNA-1_B23KGCJLT4_1)
Attempt

Content

Loaded 472,386 probes for 1029_0W2-N1-BDNA-1_B23KGCJLT4_1
  Sex homology mask: 1494 probes set to mask=2
  5-feature GAM: R²=0.9416
Traceback (most recent call last):
  File "/usr/local/bin/normalize_sample.py", line 187, in <module>
    normalize_one_sample(
  File "/usr/local/bin/normalize_sample.py", line 121, in normalize_one_sample
    os.makedirs(os.path.dirname(output_path), exist_ok=True)
  File "<frozen os>", line 225, in makedirs
FileNotFoundError: [Errno 2] No such file or directory: ''