Error executing process > 'SOMATIC_CNV_CALLING:SOMA_CNV_CALL (1)'

Caused by:
  Can't stage file /code/NO_FILE_GENES -- file does not exist


Command executed:

  python /usr/local/bin/call_cnv.py \
      --tumor-parquet 1029_0W2-T1-TDNA-1_A23KCGYLT4_1_normalized.parquet \
      --normal-parquet 1029_0W2-N1-BDNA-1_B23KGCJLT4_1_normalized.parquet \
      --pairs pairs.tsv \
      --specimen 1029_0W2 \
      --output 1029_0W2_segments.tsv \
      --tumor-alleles 1029_0W2-T1-TDNA-1_A23KCGYLT4_1_alleles.tsv.gz \
      --normal-alleles 1029_0W2-N1-BDNA-1_B23KGCJLT4_1_alleles.tsv.gz \
      --plots-dir plots \
      --metrics-output 1029_0W2_metrics.tsv \
      --workers 4 \
          \
      --fit-method clonal-decomp --mode ascn

Command exit status:
  -

Command output:
  (empty)

Container:
  292967571998.dkr.ecr.us-west-2.amazonaws.com/soma-cnv:latest

Tip: you can try to figure out what's wrong by changing to the process work dir and showing the script file named `.command.sh`