Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c4/d07780370541d271176520def8a5b9/test_pairs.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c4/d07780370541d271176520def8a5b9/1029_0W2-N1-BDNA-1_B23KGCJLT4_1_normalized.parquet
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6d/aa2c09bf051efe3b0522d328376402/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c4/d07780370541d271176520def8a5b9/1029_0W2-T1-TDNA-1_A23KCGYLT4_1_alleles.tsv.gz
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c4/d07780370541d271176520def8a5b9/1029_0W2_segments.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6d/aa2c09bf051efe3b0522d328376402/.command.run
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c4/d07780370541d271176520def8a5b9/1029_0W2-N1-BDNA-1_B23KGCJLT4_1_alleles.tsv.gz
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c4/d07780370541d271176520def8a5b9/1029_0W2-T1-TDNA-1_A23KCGYLT4_1_normalized.parquet
==> STAGING COMPLETE (8 inputs)
mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-sbi9mfox because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
Batch mode: 1 of 1 specimens
Loading parquets for 1 specimens...
WARNING: missing ./1029_0W2/1029_0W2-T1-TDNA-1_A23KCGYLT4_1.parquet
WARNING: missing ./1029_0W2/1029_0W2-N1-BDNA-1_B23KGCJLT4_1.parquet
0 rows in 0.0s
Traceback (most recent call last):
File "/usr/local/bin/export_viewer.py", line 1331, in <module>
main()
File "/usr/local/bin/export_viewer.py", line 1221, in main
offsets = compute_offsets(sample_groups[first_sample])
~~~~~~~~~~~~~^^^^^^^^^^^^^^
KeyError: '1029_0W2-T1-TDNA-1_A23KCGYLT4_1'