Error executing process > 'MPILEUP_HG19 (659_fap_ashion)'

Caused by:
  Process `MPILEUP_HG19 (659_fap_ashion)` terminated with an error exit status (1)


Command executed:

  echo "659_fap_ashion" > sample_name.list
  
  bcftools \
      mpileup \
      --fasta-ref genome.fa \
       \
      659_fap-T1.bam \
      -T ngscheckmate_snps_hg19_full.bed \
       \
      | bcftools call --output-type v --no-version --ploidy 1 -c \
      | bcftools reheader --samples sample_name.list \
      | bcftools view --output-file 659_fap_ashion.ngscheckmate.vcf.gz --output-type z --no-version
  
  
  
  tabix -p vcf -f 659_fap_ashion.ngscheckmate.vcf.gz
  
  bcftools stats 659_fap_ashion.ngscheckmate.vcf.gz > 659_fap_ashion.ngscheckmate.bcftools_stats.txt
  
  cat <<-END_VERSIONS > versions.yml
  "MPILEUP_HG19":
      bcftools: $(bcftools --version 2>&1 | head -n1 | sed 's/^.*bcftools //; s/ .*$//')
  END_VERSIONS

Command exit status:
  1

Command output:
  (empty)

Work dir:
  s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/60/846ec733f5b6874f4c80fea0bdf77e

Container:
  quay.io/biocontainers/bcftools:1.20--h8b25389_0

Tip: you can try to figure out what's wrong by changing to the process work dir and showing the script file named `.command.sh`