apiVersion: batch/v1
kind: Job
metadata:
  name: nf-c42b592b016769f7085a64958dc7f6bd-af040
  namespace: nextflow
  labels: &id001 {nextflow.io/processName: NIPT_CALLING_CONCAT_VCFS, nextflow.io/runName: nipt-hg-1000x-allff-stutter-noasm-6a22f15c,
    nextflow.io/sessionId: uuid-4c3335c7-3471-436a-ae0a-4b938e4d765c, pltf/run-name: nipt-hg-1000x-allff-stutter-noasm-6a22f15c,
    pltf/run-component: task, nextflow.io/app: nextflow, nextflow.io/taskName: NIPT_CALLING_CONCAT_VCFS_2026-0071_HG00733_HG00732_pure_fetal,
    pltf/run-id: 05e927cf, pltf/run-engine: nextflow, pltf/run-creator: tdouglas}
  ownerReferences:
  - {apiVersion: v1, kind: Pod, name: nipt-hg-1000x-allff-stutter-noasm-6a22f15c-05e927cf-gmxt2,
    uid: 5e1a1135-3d60-40eb-8d8c-603cf6b64a5b, controller: true, blockOwnerDeletion: true}
spec:
  backoffLimit: 0
  template:
    metadata:
      name: nf-c42b592b016769f7085a64958dc7f6bd-af040
      namespace: nextflow
      labels: *id001
    spec:
      restartPolicy: Never
      containers:
      - name: nextflow
        image: 292967571998.dkr.ecr.us-west-2.amazonaws.com/community.wave.seqera.io/library/htslib_pysam_numpy_scipy:275cef53a6366c67
        args: [/bin/bash, -o, pipefail, -c, 'trap "{ ret=$?; /opt/s5cmd/bin/s5cmd
            --log error cp .command.log s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c4/2b592b016769f7085a64958dc7f6bd/.command.log||true;
            exit $ret; }" EXIT; /opt/s5cmd/bin/s5cmd --log error cat s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c4/2b592b016769f7085a64958dc7f6bd/.command.run
            | bash 2>&1 | tee .command.log']
        workingDir: /tmp
        imagePullPolicy: Always
        env:
        - {name: SSL_CERT_DIR, value: /opt/s5cmd/ssl/certs}
        - {name: SSL_CERT_FILE, value: /opt/s5cmd/ssl/ca-certificates.crt}
        resources:
          requests: {cpu: 2, memory: 8192Mi, ephemeral-storage: 20480Mi}
          limits: {memory: 8192Mi, ephemeral-storage: 20480Mi}
        volumeMounts:
        - {name: vol-1549, mountPath: /app}
        - {name: vol-1550, mountPath: /tmp}
        - {name: vol-1551, mountPath: /mnt/secrets}
        - {name: vol-1552, mountPath: /opt/s5cmd}
      nodeSelector: {karpenter.sh/capacity-type: spot}
      serviceAccountName: sa-nextflow
      securityContext: {runAsUser: 1000}
      tolerations:
      - {key: workload, operator: Equal, value: nextflow-task, effect: NoSchedule}
      activeDeadlineSeconds: 3600
      volumes:
      - name: vol-1549
        emptyDir: []
      - name: vol-1550
        emptyDir: []
      - name: vol-1551
        secret: {secretName: aws-secrets-manager}
      - name: vol-1552
        hostPath: {path: /opt/s5cmd}
  ttlSecondsAfterFinished: 28800